The Flow of Genetic Information Flashcards

1
Q

Three ways that genetic information flows

A
  1. Expression (DNA to Proteins)
  2. Recombination (DNA shared with other cells)
  3. Replication (DNA given to new generation of cells)
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2
Q

rRNA

A

Ribosomal RNA

  • 5S, 16S, 23S
  • Catalytic role
  • 70% of cellular RNA
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3
Q

mRNA

A

Messenger RNA

  • Informational role
  • 10% of cellular RNA
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4
Q

tRNA

A

Transfer RNA

  • Functional role
  • 20% of cellular RNA
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5
Q

RNA Polymerase structure

A
  • (in E.coli) has 5 subunits: α, β, β’, ω and σ
  • α, β, and β’ synthesize RNA
  • ω helps with enzyme assembly
  • σ factor recognizes promotor region to initiate transcription (adds specificity)
  • catalyzes phosphodiester bond formation between ribonucleotides
  • DNA dependent, no primers needed
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6
Q

Protein Encoding Sequence Structure (DNA)

A

Promoter - RNA-coding sequence - Terminator

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7
Q

Protein Encoding Sequence Structure (mRNA)

A

Leader - Protein-coding sequence - Trailer

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8
Q

Promoter Structure

A

-35 sequence - variable sequence - Pribnow box (-10) - +1 (start transcription)

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9
Q

Terminator Structure

A

Contains A-U pairs with weak bonding

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10
Q

Initiation

A

RNA Polymerase binds to promoter sequence assisted by σ factor

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11
Q

Elongation

A

RNA Polymerase moves along template strand (antisense), opening a transcription bubble and ribonucleotides are added to 3’ -OH of preceding nucleotide

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12
Q

Termination

A

RNA Polymerase reaches a terminator sequence:

  • Self determining/intrinsic/Rho independent: stem loop forms from transcribed RNA, pulling polymerase apart
  • Enzyme/Rho dependent: terminator protein binds to terminator sequence on mRNA and yanks mRNA through it to push polymerase off
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13
Q

Why use operons?

A

Allows for related genes to be expressed and regulated together

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14
Q

Polycistronic mRNA arises from…

A

…transcription of operon genes that are on a single mRNA

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15
Q

AUG codes for…

A

N-formylmethionine

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16
Q

Nonsense codons:

A

UGA, UAG, UAA

17
Q

There are __ sense codons

A

64 (4 bases^3 per codon)

18
Q

The code is degenerate because…

A

…different codons code for the same amino acid

19
Q

Wobble Effect

A

3rd base in codon is flexible for matching

G pairs with U, I pairs with everything but G

20
Q

Shine-Dalgarno Box

A
  • AGGA

- Upstream of start codon

21
Q

Translation Initiation

A
  • 30S subunit binds to SD box
  • fMet tRNA binds to AUG
  • 50S subunit binds
22
Q

Important sites on 50S subunit

A

A site: site where new tRNA attaches
P site: site where growing polypeptide is held
E site: site where tRNA is released

23
Q

Translation Elongation

A

50S subunit catalyzes formation of peptide bond between amino acids

24
Q

Translation Translocation

A

Ribosome advances one codon down, leaving empty tRNA in E site and the new peptide tRNA in the P site

25
Q

Translation Termination

A

As the stop codon is reached, release factor proteins are recruited and bind in the A site, causing the polypeptide to release and ribosome to fall apart