The Cell Lecture Ch 1 (Dr. Dobson) TEST 1 Flashcards
The Objective of continued Genomic Research include the following:
1) Find variations in the DNA sequence among people and determine their significance. The most common type of genetic
variation is known as a SINGLE NUCLEOTIDE POLYMORPHISM or SNP (pronounced “snip”). These small differences may
help PREDICT A PERSON’S RISK OF PARTICULAR DISEASES AND RESPONSE TO CERTAIN MEDICATIONS.
2) Discover the 3-dimensional structures of PROTEINS and identify their functions.
3) DEVELOP AND APPLY GENOME-BASED STRATEGIES FOR THE EARLY DETECTION, DIAGNOSIS, AND TREATMENT OF DISEASE!!!!!!
4) Sequence the genomes of other organisms, such as the rat, cow, and chimpanzee, in order to compare similar genes between species.
5) Develop new technologies to study genes and DNA on a large scale and store genomic data efficiently.
6) Continue to explore the ethical, legal, and social issues raised by genomic research.
Human Genome
- 3.2 Bullion DNA Base PAIRS
- Within the Genome, 20,000 Protein Endowing Genes (1.5% of the Genome)!!!!!!!
- Proteins act as:
a) Enzymes
b) Structural Components
c) Signaling Molecules - Proteins used to assemble and maintain all cells of the Body
The No-Protein- Coding Sequences (the other 98.5%)
1) Promoter and enhancer regions that provide binding sites for TRANSCRIPTION FACTORS
2) Binding sites for factors that ORGANIZE AND MAINTAIN higher order chromatin structures
3) NONCODING REGULATORY RNAs:
- More than 60% of the genome is transcribed into RNAs that are never translated into protein, but which nevertheless can regulate gene expression through a variety of mechanisms. The two best-studied varieties—MICRO-RNAs and LONG NONCODING RNAs—are described later!!!!!
4) Mobile genetic elements (e.g., TRANSPOSONS).
- More than one third of the human genome is composed of these elements “JUMPING GENES”.
- These segments can move around the genome, exhibiting wide variation in number and positioning even amongst closely related species (i.e., humans and other primates).
- They are IMPLICATED IN GENE REGULATION AND CHROMATIN ORGANIZATION, but their function is still not well established.
5) Special structural regions of DNA, in particular TELOMERES (chromosome ends) and centromeres (chromosome “tethers”)
Polymorphisms
- Genetic Variation associated with Diseases are located in these Non-Portion Coding regions of the GENOME. These genetic Variations are referred to as POLYMORPHISMS
Epigenetics
- Heritable changes in GENE EXPRESSION that are NOT CAUSED by ALTERATIONS in DNA Sequence
Histones
NUCLEOSOMES:
- DNA Segments wrapped around LOW MOLECULAR WEIGHT Proteins called HISTONES!!!!
HISTONES can be MODIFIED BY: a) Methylation b) Acetylation c) Phosphorylation (EPIGENETIC ALTERATIONS)
- DNA can also be Methylated
**These MODIFICATIONS are REVERSIBLE!!!
These events have a role in Development of Disease and Malignancy
1) Transcriptional activation
2) Transcriptional repression
3) Increased transcription
4) Open DNA for transcription or condense it to become Inactive
5) Transcriptional silencing
Cellular Housekeeping
- Protection from Environment
- Nutrient Acquisition
- Communication
- Movement
- Renewal of Senescent Molecules
- Molecular Catabolism
- Energy Generation
Proper Organization of Phospholipids
*** Proper Organization of Phospholipids is IMPORTANT for CELL HEALTH, as Specific Phospholipids INTERACT with Particular Membrane Proteins, Influencing their DISTRIBUTION and FUNCTION
- PHOSPHOTIDYLINOSITOL on the inner membrane leaflet can be phosphorylated, serving as an ELECTROSTATIC SCAFFOLD for intracellular proteins; alternatively, polyphosphoinositides can be hydrolyzed by phospholipase C to generate intracellular second signals like diacylglycerol and inositol triphosphate.
- PHOSPHOTIDYLSERINE is normally restricted to the inner face where it confers a negative charge involved in electrostatic protein interactions; however, when it flips to the extracellular face, which happens in cells undergoing APOPTOSIS (PROGRAMMED CELL DEATH), it becomes an “eat me” signal for phagocytes. In the special case of platelets, it serves as a cofactor in the clotting of blood.
- GLYCOLIPIDS and SPHINGOMYELIN are preferentially expressed on the extracellular face; glycolipids (and particularly Gangliosides, with complex sugar linkages and terminal sialic acids that confer negative charges) are important in cell-cell and cell- matrix interactions, including inflammatory cell recruitment and sperm-egg interactions
Plasma Membrane Proteins
- The plasma membrane is liberally studded with a variety of PROTEINS AND GLYCOPROTEINS involved in (1) Ion and Metabolite Transport, (2) Fluid-Phase and Receptor-Mediated uptake of macromolecules, and (3) Cell-Ligand, cell-matrix, and cell-cell interactions.
- Many plasma membrane proteins function together as large complexes; these may either be aggregated under the control of Chaperone molecules in the RER or by lateral diffusion in the plasma membrane followed by complex Formation in situ.
Examples of Plasma Membrane Proteins
1) AQUAPORINS:
• Aquaporins are special integral membrane proteins that allow renal tubular epithelium to Transport large Volumes of WATER
• Transported molecules require specific transporters i.e. Glucose
• Active transport against a gradient may require energy (ATP). This is how the multidrug resistance protein works
Cytoskeleton and Cell to Cell Interactions
1) ACTIN Microfilaments
2) INTERMEDIATE Filaments
3) MICROTUBULES
Actin Microfilaments
- Actin microfilaments are 5- to 9-nm diameter fibrils formed from the Globular Protein ACTIN (G-actin), the most abundant cytosolic protein in cells.
- The G-actin monomers noncovalently polymerize into LONG FILAMENTS (F-actin) that intertwine to form double-stranded helices with a defined polarity; new globular subunits are added (or lost) at the “positive” end of the strand.
- In MUSCLE CELLS, the filamentous protein Myosin binds to Actin, and moves along it, driven by ATP hydrolysis (the basis of muscle contraction).
- In Non-muscle cells, F-actin assembles via an assortment of actin-binding proteins into well-organized bundles and networks that control cell shape and movement.
Intermediate Filaments
- Are 10-nm diameter fibrils that comprise a large and heterogeneous family. Individual types have characteristic tissue-specific patterns of expression that can be useful for assigning a cell of origin for poorly differentiated tumors.
A) LAMIN A, B, and C: Nuclear Lamina of all cells
B) VIMENTIN: Mesenchymal cells (fibroblasts, endothelium)
C) DESMIN: Muscle Cells, forming the scaffold on which actin and myosin contract
D) NEUROFILAMENTS: axons of neurons, imparting strength and rigidity
E) GLIAL FIBRILLARY ACIDIC PROTEIN: glial cells around neurons
F) CYTOKERATINS: at least 30 distinct varieties, subdivided into acidic (type I) and neutral/basic (type II); different types present in different cells, hence can be used as cell markers
Microtubules
- Are 25-nm-thick fibrils composed of Noncovalently Polymerized dimers of α- and β-tubulin arrayed in constantly elongating or shrinking hollow tubes with a defined polarity; the ends are designated “+” or “−”.
- The “−” end is typically embedded in a microtubule organizing CENTER (MTOC or CENTROSOME) near the nucleus where it is associated with paired centrioles; the “+” end elongates or recedes in response to various stimuli by the addition or subtraction of tubulin dimers.
- WITHIN CELLS, MICROTUBULES CAN SERVE AS CONNECTING CABLES FOR “MOLECULAR MOTOR” PROTEINS THAT USE ATP TO MOVE VESICLES, ORGANELLES, OR OTHER MOLECULES AROUND CELLS ALONG MICROTUBULES
Cells interact and communicate with one another by forming JUNCTIONS that provide mechanical links and enable surface receptors to recognize ligands on other cells.
Cell junctions are organized into three basic types:
1) Occluding Junctions (TIGHT JUNCTIONS)
- The complexes that mediate the cell-cell interactions are composed of multiple transmembrane proteins, including Occludin , Claudin, Zonulin, and Catenin
2) Anchoring Junctions (DESMOSOMES)
- In belt desmosomes, the transmembrane adhesion molecules are called E-CADHERINS and are associated with intracellular Actin Microfilaments, by which they can influence cell shape and/or motility.
3) Communicating Junctions (GAP JUNCTIONS) Gap junctions play a critical role in cell-cell communication; in CARDIAC
MYOCYTES, for example, cell-to-cell calcium fluxes through gap junctions allow the myocardium to behave like a functional SYNCYTIUM capable of coordinated waves of contraction—the beating of the heart.
Biosynthetic Machinery
The Endoplasmic Reticulum (ER) is the site for synthesis of all the transmembrane proteins and lipids for plasma membrane and cellular organelles, including ER itself. It is also the INITIAL SITE for the Synthesis of all molecules destined for EXPORT OUT of the cell.
- Membrane-Bound Ribosomes on the cytosolic face of RER translate mRNA into proteins that are extruded into the ER lumen or become integrated into the ER membrane.
- Chaperone molecules RETAIN proteins in the ER until these modifications are complete and the proper conformation is achieved. IF A PROTEIN FAILS TO APPROPRIATELY FOLD OR OLIGOMERIZE, IT IS RETAINED AND DEGRADED WITHIN THE ER!!!
Cystic Fibrosis
AFFECTED PROTEIN:
- Cystic Fibrosis Transmembrane Conductance Regulator (CFTR)
PATHOGENESIS:
- Loss of CFTR leads to DEFECTS in CHLORIDE Transport
Familial Hypercholesterolemia
AFFECTED PROTEIN:
- LDL Receptor
PATHOGENESIS:
- Loss of LDL Receptor leading to Hypercholesterolemia