Test 2-P8,P9,P10 Flashcards

1
Q

How do cells replicate

A

-DNA get synthesis breaking the parent double helix into 2 strands and theres strand each get a new strand with complimaenty based attached to it. So now we have 2 daughter doubles helix each with one new strand and each with one new strand.

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2
Q

What is genes expression

A

Cell In Multicellar organizsm have all the genes to make all the proteins
Transcribing from DNA, and then translating intoprotein is call gene expression

Example-babies skin cell don’t make alot of kertin which the protein to make hair but how cell decide that gene get trasncibed or translates is gene expression

Gene changes due to eviroment, development, age

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3
Q

Lac Opera

A

A cell can regulate the production of enzymes
by feedback inhibition or by gene regulation
* One mechanism for control of gene expression
in bacteria is the operon model

-Pieces of DNA on bacterial chromosomes that makes decsion about am i going to make this thing or not make this thing and it not one gene it is several genes

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4
Q

How the operon works

A
  • A cluster of functionally related genes can be
    coordinately controlled by a single “on-off
    switch”
  • The switch is a segment of DNA called an
    operator, usually positioned within the
    promoter
  • An operon is the entire stretch of DNA that
    includes the operator, the promoter, and the
    genes that they control
    The operon can be switched off by a protein
    repressor(always around made by something outside the operon)
  • The repressor prevents gene transcription by
    binding to the operator and blocking RNA
    polymerase
  • The repressor is the product of a separate
    regulatory gene, located some distance from
    the operon itself

By itself, the lac repressor (protein) is active
and switches the lac operon off
* A molecule called an inducer inactivates the
repressor to turn the lac operon on. Lactose
(carbohydrate) is the inducer for the lac
operon
* The idea is not to transcribe and translate
genes unless you can use them (it’s expensive)

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5
Q

Pro and Con for Virus is alive

A
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6
Q

Covid 19 life cycle

A

Virus is covered in a membrane. Has mRNA for its genome. Can use energy from cell it is invading to reproduce.Can (is) evolving.

Covid-RNA varius want to make copies of itslef, but converious have similar genome-gene sequences and nukber of gene speciflized for pathogensis-how to differentiate

-Covid Process-Attach itself to self through virus cell interaction to bine to a protein ACE2, then it get in the because membrane hids it gentic material,virus genome is in cell, finds a host called a ribsome,Ribosomes take sequences viral RNA and tranlsates it protein, protein is the means to express genes, more of viral RNA, the faster the cell can be taken over

-Covid encode geen to complete its life cycle but also is the way it sends a message out to the cell to make more of its genes

Conlclsion-Alot of protein in cells from the virus or ones the virus has manipulated.End of viral lifcycle, it sends it potein to partiuclar places in the cell where protein are concentrated and new virus particles are made

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7
Q

Lac operon

A

b-galactosidase Degrades Lactose in to galatose and glucose using hydrosis/water because it cant use lactose diretly for energy but can use gluscose

The lac operon and contains genes that code
for enzymes used in the hydrolysis and
metabolism of lactose

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8
Q

Lactose present

A

int he absences of lactose the lac repressor bind to the operor and prevent the RNA polymeriese from moving to trsncibes the DNA into MRNA
-the machine is off
-RNA only binds to the promoter if it had to have CAMP/CRP-Present when no glusose

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9
Q

Lactose not present

A

RNA Connect to promoter, lactose, the inducer take repressor off operor by changing its shape, machine is on to transcribed lac Z, Y, A at a slow rate and translated to make protein to make enzymes to break down lactose into glusocse and galatose
When latose all gone the repressor goes back to its shape and bind to the operor again to shut it off

permeate allows to suck up lactose when it is around

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10
Q

if glucose and lactose around

A

Machine wont turn on
CRP protein sense the glucose change by sensing Camp response(signaling molecule_
-Glucose high, camp low
-Lac operon only deals with lactose

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11
Q

Group question 8-Lac operon when glusose and lactose around(Draw)

A

Draw

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12
Q

Eukaryotic Epigenetic
Gene Regulation

A

Eukaryotic gene expression is more complex than in
prokaryotes:
 Transcription and translation are physically
separated.
 Regulation can occur at many levels.
 1st level begins with control of access to the DNA –
epigenetic regulation – and occurs before
transcription begins.
 Transcription factors are proteins that control the
transcripton of genetic information from DNA to
RNA
Eukaryotic Epigenetic
Gene Regulation
*

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13
Q

Promoter and
Transcription machinery

A

This is an example of why control
of transcription is more
complicated in Eukaryotes.
* Lots of proteins involved-all of
which can affect transcription
* The control elements can be
physically far away from the part
of the gene that turns into protein
* Mutations that affect the length of
the DNA in that loop can affect
transcription
DNA bending protein changes the shape of DNA
and properly orients enhancer region.

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14
Q

What is alive and do virus do it

A

Exist as one or more cells(NO)
* Use and synthesize genetic information
to reproduce(Yes)
* Descend from other beings and are the
products of evolution(Yes)
* Produce molecules from environmental
substrates(Virus don’t do themselves but code in other cells to do this)
* Harvest energy and use it to perform
functions(Use Energy from the cells they effect not of their own and but doesn’t perfrom its own fucntion and doesn’t convert its own energy)
* Regulate their internal environment(Yes, but to rudementry extent)

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15
Q

Virus

A

usually really small
-HIV virus has an envelope/membrance around it, Capsid had RNA but not a nucleus
-All cell have DNA but virus can have DNA or RNA
-HIV has spike protein onto he outside which binds to human cells
-Virus genome is smaller tha a cell(3.1 billion base pairs), HIVless than 10,000 bp to cripple the
human immune system (human
genome is 310,000X bigger)
Cell

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16
Q

Covid Test

A

Rapid covid- test detects a protein made
by the virus(nucleocapsidprotein-not the
spike associate with mrna inside the virus).Faster,cheaper, lessaccurate
(more chance of false
negative).-(Tell us about virus that may not be infectous)(No variation/no much in nucleocapsidprotein in the variants)

PCR covid test detects mRNA (spike) from
virus.Slower, more accurate*,More
sensitive Spike proteins(Variation of covid is the spike protein-coming up against antibodies in population, the virus make new version of spike protein to get around it)

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17
Q

Vaccines(Ask)

A

MRNA vaccines, their is code to make the spike in the vaccine and now to make antibodies against this spike, not MRNA from the whole virus that why you dont get covid
Benfits-you can make it fast(6 Weeks, other vaccines take 2 or 3 years)
Bosttser-half of orignals and hald of new spike BA5
-Spike is how virus get in the cell, vaccines help cell make anitbodies to stop the virus

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18
Q

Are virus alive Alive

A

1) All (cells) viruses come from
preexisting (cells) viruses.
2) (cells)
Viruses maintain internal
environments that differ from their
external environments.
3) (cell)
Virus structure defines (cell) virus
function.
4) (cells) Viruses
communicate with other (cells)
viruses.

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19
Q

Covid-Why some people are asymptomatic

A

htpothesis :Covid virus expose someone thn other because some expose to virus similar, so they have antibodies against it

Pfizer lower does or MRNA than Moderna(MRNA Vaccine)
Johnson and Johnson(DNA molecules incorpated by cells that turns into MRNA for Spike protien)

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20
Q

Draw Mitocondria

A

Outer membrane (s)
Inner membrane
Matrix
Intermembrane space
Thylakoid
Grana
Stroma
ONE LINE= ONE MEMBRANE
Submit it to Group Exercise #9 folder- all names (first
and last)- 1 pdf file

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21
Q

Draw Chlorplast

A

Outer membrane (s)
Inner membrane
Matrix
Intermembrane space
Thylakoid
Grana
Stroma
ONE LINE= ONE MEMBRANE
Submit it to Group Exercise #9 folder- all names (first
and last)- 1 pdf file

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22
Q

mitocondira

A

one line is one membrane
mitocondria- has 2 membrance-inner and outer
inner membrance that is all foldered up is called the cristie
-Mitocondria not static like beans but more like a lava lamp-Scientist put it in place and they see a bean shape
-Its a huge membrane network that is constanly flowing, it fused and come togther
-inner membrane extends into mitochondrion

23
Q

chlorplast

A

-Its a huge membrane network that is constanly flowing, it fused and come togther
-It has three membranes(2 outer layers and 1 inner layer)
Inner membrance-interleafing stacks of
membranes
-Chlorplast dont have a cell wall because organelle dont have a cell wall

24
Q

plant cell

A

-cell wall
-all plant cells have mitochondria
-When the light go off or when winter comes and plant dont have chloplast in their leaves, plant used their mitochondria for energy
-

25
Q

chloroplast genome

A

flowing togther and coming apart and they have DNA and its a circle, all over the place in chloroplast and if you are blobing off then you carry come DNA and Leave some behind, so their is sevral copies of DNA and these are chromsomes

11 copies of Chloplast genome

26
Q

Origins of Chloroplast and mitochondria

A

Endosymbiosis
DNA eveidence that they were once prokaryotes

27
Q

Origins of mitochondria

A

Filo genetic tree
-took alot of sequences from prokaryotes(ecoli, rikessia), then they sequenced mitocondria to see what they are related to them
-Bottom of tree is is MRCA(Most recent), with 100 % match to Rickessia Prowazeki(proteobacteria)

28
Q

Origins of Chloplasts

A

Filo genetic tree
-took alot of sequences from prokaryotes(ecoli, rikessia), then they sequenced chlorplasto see what they are related to them
-Bottom of tree is is MRCA(Most recent), with 100 % match to synechocystics(cyanobacteria)

29
Q

vinie Virus and sputnik

A

Vinnie-Virus within a virus is big and virus with a virus and looks like a flower
Sputnik-hard to see with eletronic miscirope and it a brius with a virus.

30
Q

Mad Cow Disease

A

There is way to get disease that is not by virus and bacterial but by protein
-protein in nervous systems to be alive and it fold into shapes to have a function brain but another shape fold to clump together to make a cooked egg shape that kill cells in the brain make holes in the brains like sponge look
-Don’t turn over cell quickly in the brain
-Killed by prions protein not virus
-Ground up cow part being fed to cows as protien pellet but prions protein in pellets and affect cows and people,only find out after you die
-The disease can affect you up to 10 years later
same disease in white tale dear population
(can’t cook it out or autoclave it out)
-No nucleic acid involved in its cycle-Samy crooner won noble
-Protein making bad copies of protein-if you have a template for bad protein and acts for mold for protein to take a shape if condition is right it, the bad protein acts like a seed the other protein start to act like

31
Q

The selfish gene hypothesis explains what

A

What is alive is “We are vehicles for our DNA, we are hosts for DNA parasites which
are our genes.”(Were bags of DNA)
-Virus need other cells to reproduce like parasites and parasite we consider alive
-Virus fit into this defintion
- We are host for DNA parasites

32
Q

A virus is alive because

A

1) All (cells) viruses come from
preexisting (cells) viruses. 2) (cells)
Viruses maintain internal
environments that differ from their
external environments. 3) (cell)
Virus structure defines (cell) virus
function.-What they have for their gennome and capsid 4) (cells) Viruses
communicate with other (cells)
viruses.

33
Q

Cell cycle

A

-Order series of event of the life cycle of a cell
1.G1-Growth phase
2.S1-Duplicate DNA by semi conservative replication
3.G2-Another growth phase
4.Mitotic Phase-Mitosis and Cytokinesis

-Some cell take long time and is in G0
-In 20s brain is going through last bits of mitosis-frontal cortex and that it
-Some cell you do mitosis every day when you brush you mouth because you kill cells,bruch hair/hair folcucles, pooped/cell from gut lining

34
Q

What is Mitosis

A

(Replication division )of cell
1 cell to make 2 identical cells
-Body Cell, most cell went through mitosis
-photocopier

35
Q

Genome in Mitosis

A

Mitosis replicates the genome of the original cell. A genome is the sum of all the genetic information in a cell (sometimes divided into nuclear vs. mitochondrial/chloroplast genomes), so add up all this DNA makes your genome

36
Q

How to Prokaryotes and Eukaryotes store DNA

A

Genetic information stored as DNA
(except some viruses), DNA packaged
into chromosomes (circular
Prokaryotes, linear Eukaryotes)

Some virus store it by RNA but all cell store as DNA

37
Q

Why do cells divide?-Mitosis

A

In unicellular organisms, division of one cell
reproduces the entire organism
* Multicellular eukaryotes depend on cell division
for
– development from a fertilized egg
– growth
– repair
* Cell division is an integral part of the cell cycle,
the life of a cell from formation to its own division

38
Q

What is a chromosome?

A

A chromosome is any single, connected structure that packages DNA from the genome.

If you pulled on it with a hook, you would pull away one thing.

For linear chromosomes, just count centromeres (= # chromosomes)

-DNA wrapped in protein and connect as one unit thing
-DNA is packed and you can’t use it but you can carry it from one place to another, when unpacked from Chrosome to use them in cells for transcription
-Packed in mitosis

-Can see human chromsones when about to go through mitosis

39
Q

Sea Urchen

A

-Get a hollow cell called a blastious stage and those hollow cell start to move in which called gastial stage, at this stage can see the head and tale of organism. And all these cells are arriving by mitois.Not long g1 stage, and the cell get smaller in first part of dvelopment

Cancer cell-dont go trhough G1, so small, alot of DNA but alot of cytoplasm

40
Q

Draw Cell Cycle-Mitosis

A

Draw

41
Q

Phases of the Cell Cycle-Mitosis

A

Most of the cell cycle (Pie-Graph) is Interphase
(G1+S+G2)
* Mitosis is conventionally broken down into five
stages:
– prophase
– metaphase
– anaphase
– Telophase
– All together, remember ‘IPMAT’

42
Q

How many chrosmone do bacteria have

A

its in a circle but usualt twisted on its self, it has one chrosomes but no centromere

a bacterial genome
(not typically seen like
this- more likely folded
over and over on itself

43
Q

Eukaryotic
chromosomes

A

Eukaryotic
chromosomes are
linear- the number of
chromosomes is
species specific
(usually)

Humans have 23
PAIRS of
chromosomes (46 total)

Only look like this
during mitosis-
normally chromosomes
are not so condensed
-x from mom and y from dad

44
Q

Human Chromosome

A

Humans Have 46 Chromosomes

diploid (2 copies of each
chromosome- 1 from
Mom, 1 from Dad) this
diagram is a human
male genome
46 chromosomes
22 pairs + X and Y

This preparation of chromosomes is
called a karyotype(at risk pregency)
Homologous chromosomes are
lined up on a computer screen and codes for the same info and same size, centremere in same place, and on a given spot on chromomse codes for same thing

45
Q

What is a chromatid

A

2 chromatids/ chromosome
at the cell stage where this
image was taken
-1 chrosome has 2 chromatids and one centrometre

-arm of chrosomes

46
Q

Mitosis-Duplication

A

Prior to the s phase
G1-Each Chrosome has one Chromatid
After the s-phase you have 2 chromatids per Chromosome(Chomosomes does double the Chromatids do to have sister chromatids

47
Q

draw mitosis

A

draw

48
Q

Mitosis stage

A

Prophase
-Centriol move to poles of cell
-Chrosome condense-start to see chromosomes
-No longer see nuclear envlope
-Spindle
Prometaphase-
-spindle microtubles attach to kinetchores from centrosomes
-chrosomes continue to condense
-Centrosomes move toward the poles

Metaphase
_mitoitc spindle full dveloped
Chrosmones line up in the middle of the cell
sister chromids attach to spindle fibers that are coming from each pole

Anaphase
-Cohesion protein break between sister chromtids and puleld part
-Non-kintochore spindle lengthen and elogate the cell

Telephase
-Chromsones on oppite side of the cell decondense
-Nuclear envlope develops around them
-Mitotic spindle break down

Cytokenisis
-Cell are sperate
on aniamls cell it is sperated by clevage furrow and in plate by a cell plate

49
Q

Differences of Chromatid and Chrosomes

A

one arm-Chromotids,
two arm Chromatics, chrosomes
-Chromosomes made of chromtids

(G1-Each Chrosome has one Chromatid
After the s-phase you have 2 chromatids per Chromosome(Chomosomes does double the Chromatids do to have sister chromatids)

50
Q

Mitosis Summaried Steps

A

Prophase
* Nuclear envelope breaks down
* Membranous organelles (eg. Golgi complex,
endoplasmic reticulum) disperse toward
edges of the cell
* The nucleolus disappears
* Centrosomes begin migration to poles
* Microtubules of the spindle form

ProMetaphase
Sister chromatids
develop a protein
kinetochore in the
centromere region
which attaches the
chromatids to the
spindle microtubules

Metaphase
* Chromosomes line up along metaphase plate
* Sister chromatids remain attached to each other

Know Microtubule
spindle
Centrioles in the
centrosome

Anaphase
* 1 chromosome with 2
sister chromatids
becomes 2
chromosomes, each
with 1 chromatid
* Separated sister
chromatids move in
opposite directions
toward the
centrosomes to which
their microtubules are
attached
* The cell elongates

Telophase
* Chromosomes reach
opposite poles and begin
to decondense (unravel)
* Spindles depolymerize
into tubulin monomers
* Nuclear envelopes form
around the chromosomes,
forming new nucleus in
each daughter cell

51
Q

The Mitotic Spindle

A

The Mitotic Spindle
* The mitotic spindle is a structure made of
microtubules that controls chromosome
movement during mitosis
* In animal cells, assembly of spindle microtubules-
begins in the centrosome, the microtubule-
organizing center
* The centrosome replicates during interphase,
forming two centrosomes that migrate to
opposite ends of the cell during prophase and
prometaphase

52
Q

Cytokinesis differs between plants
and animals

A

The link that splits cell power from mucles that pinch off cell

Aniamsl0cleaage furrow
Plant-Cell plate

53
Q

Centrioles vs Centrosome

A

Centrioles are the 2 barrels at a right angle structure made of microtubules.

Centrosome is area around the centrioles.

All cells have centrosomes not all cell have centriaolse

All eukaryotic cells have a centrosome. All animal cells have
centrioles, but most plants missing them.

Both centrosomes and centrioles duplicate before prophase.
Spindle mictrotubules grow out of centrosome.
-Dont know what centriole does, but we can see it

54
Q

Mitosis hand out Draw and label

A

3 pairs is sic chromosomes
-Look at spot on chrosmomes that has DNA sequences for eye color but wont be the same one codes for blue or brown eyes
-After anaphase become one chromatid chrosomes
-