Test 2 Flashcards

1
Q

if individuals of a particular phenotype survive and/or produce more offspring than others: (2)

A
  • phenotype must be a product of the genotype (i.e. heritable)
  • genotype vary in their fitness
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2
Q

rate of change

A

a function of selection intensity

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3
Q

fixation meaning

A

only allele in 100% of population

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4
Q

changes in genotype frequency (allele frequencies have not changed but genotype frequencies have); what could reset the genotypes back to start?

A

1 generation of random mating

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5
Q

patterns of selection (4):

A
  1. recessive vs dominant alleles
  2. heterozygotes favoured
  3. homozygotes favoured
  4. frequency-dependent selection
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6
Q

patterns of selection: (1) recessive vs dominant alleles

A

individuals with +/+ or +/- are normal, -/- do not survive (recessive lethal)

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7
Q

patterns of selection: (1) recessive vs dominant alleles:

selection is rapid/slower when a recessive allele is ___(2) and lethal

A

selection is rapid when a recessive allele is common and lethal

selection is slower when a recessive allele is rare and lethal

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8
Q

patterns of selection: (2) heterozygotes favoued

A

heterozygote advantage/superiority: the fitness of heterozygotes is greater than any homozygote
(the equilibrium point depends on selection pressure)

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9
Q

patterns of selection: (3) homozygotes favoured

A

heterozygote inferiority/underdominance - the fitness of heterozygote < fitness of either homozygote

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10
Q

patterns of selection: (4) frequency-dependent selection

A

ex. red/yellow orchids (after pollinator is fooled, they try to switch between flow colour to look for nectar); if small % of population, that colour’s pollen will be picked up more!

higher reproductive success if lower frequency in colour

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11
Q

inbred stock meaning

A

starting stock that were all genetically identical to each other (i.e. no genetic variation)

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12
Q

mutation-selection balance

A
  • many mutations are deleterious
  • selection may remove deleterious alleles but mutations may re-introduce them, hence they persist
  • mutation-selection balance = rate of new copies of a deleterious allele produced by mutation EQUALS rate of selection removing them
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13
Q

gene flow (migration) may be caused by:

A
  • dispersal - one-way movement of a juvenile individual away from place of birth
  • transport of pollen, seeds, spores by any means
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14
Q

what does gene flow tend to do?

A
  • it tends to homogenize allele frequencies among populations
  • tends to prevent evolutionary divergence of populations
  • may function to decrease the population-level impact of natural selection and/or other mechanisms of evolution

-> if populations all exchange at an equal rate, eventually each population will on an equilibrium frequency of alleles (w/o other evolutionary forces)
-> would equal avg allele frequencies of the populations

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15
Q

Fst meaning?

A

a measure of variation among populations in allele frequencies at a locus
- “fixation index”

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16
Q

Fst value range, can be computed for how many populations, what does it decrease with?

A

range: 0-1
0 = all populations have identical allele frequencies
1 = no alleles are shared among populations

can be computed for 2 or more populations

gene flow reduces Fst among populations

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17
Q

evolution: (4) by genetic drift

A
  • random changes in allele frequencies from one generation to the next (sampling error)
  • does not lead to adaptation
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18
Q

what can genetic drift lead to? (2)

A
  1. fixation
  2. decline in heterozygosity
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19
Q

effective population size meaning

A
  • ideal theoretical population size that would lose heterozygosity at the same rate as the actual (census) population size (assume everyone breeds)
  • almost always lower than the actual
  • WHY: not everyone in population breed
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20
Q

what is the probability of fixation of one allele or another?

A

depends on starting frequency
- A=0.6, B=0.4;
- probability that drift will fix A is 0.6, and B is 0.4

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21
Q

demographic events that can cause genetic drift: (2)

A
  1. founder events
  2. bottleneck
22
Q

found event meaning

A

occur when a population is founded by a small group of individuals
- may considered a form of genetic drift

23
Q

bottleneck meaning

A

a sharp decline in population size followed by population recovery

24
Q

H-W assumes random mating (panmictic) includes (4)

A
  1. inbreeding
  2. outbreeding
  3. positive assortative mating
  4. negative assortative mating
  • does not on its own change allele frequencies
  • does impact genotype frequencies, so in conjunction with natural selection, can have important evolutionary consequences
25
Q

inbreeding

A

mating among closely related individuals
- results in increase in homozygotes (relative to expected H-W)
- impacts genotype frequencies, not allele frequencies (on its own, non-random mating is NOT a mechanism of evolution)

26
Q

inbreeding depression

A

reduction in avg fitness due to inbreeding
- results from: (1) exposure of recessive deleterious alleles to selection; and/or (2) loss of genome-wide heterozygosity (loss of heterozygote advantage)

27
Q

inbreeding is not a mechanism of evolution on its own, but:

A
  • does alter genotype frequencies
  • alters frequency of phenotypes ina population and the pattern of natural selection
  • therefore, in conjunction with natural selection, DOES cause evolution
28
Q

outbreeding meaning

A

mating among highly unrelated individuals

29
Q

positive assortative mating meaning

A

between individuals similar phenotypes

30
Q

negative assortative mating meaning

A

between individuals with dissimilar phenotypes (big people with small people)

31
Q

review of agents of evolution (5)

A

selection - can change allele and genotype frequencies

mutation - provides variation

gene flow “migration” - when source and recipient populations differ in allele frequencies, migration can cause recipient population to evolve (tends to homogenize)

genetic drift - random shift in allele and genotype frequencies

non-random mating - does not change allele frequencies, but does change genotype frequencies (can affect evolution with natural selection)

32
Q

phylogenetics meaning

A

study of ancestor-descendant relationships; objective is construct phylogenies

33
Q

phylogeny meaning

A

a hypothesis of ancestor-descendent relationships

34
Q

phylogenetic tree meaning, AKA

A

AKA evolutionary tree
- a graphical summary of a phylogeny

35
Q

polytomy meaning

A

3 or more subtrees; indicates genetic uncertainty as to which two are more related, thereby creating a 3+ branch node

36
Q

plesiomorphy meaning

A

refers to ancestral character state

37
Q

apomorphy meaning

A

a character state different than ancestral state, DERIVED STATE

38
Q

synapomorphy meaning

A

a derived character state (apomorphy) that is shared by two or more taxa due to inheritance from a common ancestor: these character states are phylogenetically informative using the parsimony or cladistic criterion

39
Q

autapomorphy meaning

A

a uniquely derived character state (not shared by 2 or more taxa)

40
Q

monophyletic group meaning, AKA

A

AKA clades
- consists of an ancestor and all of its descendants

41
Q

paraphyletic group meaning

A

consists of a common ancestor and some, but not all the descendants

42
Q

polyphyletic group meaning

A

consists of some of the descendants of a common ancestor, but not all + exclude common ancestor

43
Q

homologous vs homoplasy

A
  • homologous character states are inherited from a common ancestor
  • homoplasy describe similarity of character state due to independent evolution
44
Q

parallel evolution meaning

A

independent evolution of same feature from same ancestral condition

45
Q

convergent evolution meaning

A

independent evolution of same feature from different ancestral condition

46
Q

secondary loss meaning

A

reversion to ancestral condition

47
Q

outgroup - fairly closely related to ingroup
- character state possessed by outgroup is defined a ____ as ancestral (plesiomorphic)

A

priori

48
Q

parsimony meaning

A

simplest scientific explanation to fit evidence is preferred (fewest steps needed to reach end evolutionary result)

49
Q

homologous characters (synapomorphies) may be used ___________

A

to construct phylogenetic trees and identify monophyletic groups
- synapomorphies are phylogenetically informative

50
Q

molecular clock meaning

A

some types of DNA sequences change in a regular “clock-like” fashion
- neutral changes (not deleterious/beneficial), not under selection, should accumulate in populations at a rate equal to the mutation rate
- if mutation & generation time stay reasonably constant, #neutral molecular differences between 2 taxa should be proportional to age of their most recent common ancestor