TBL 3 - DNA Flashcards

1
Q

What is DNA composed of and what does it carry?

A

DNA is a polymer composed of 2 polynucleotide chains that coil around each other to form a double helix.
Carriers genetic instructions for the development, functioning, growth and reproduction of all known organisms and many viruses.

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2
Q

What are 2 DNA stands know as and what is units are they composed of?

A

2 DNA strands are known as polynucleotides as they are composed simpler monomeric units called nucleotides.

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3
Q

What are the 4 nitrogen-containing nucleotide known as?

A

Each nucleotide is composed of 4 nitrogen-containing nucleobases (cytosine [C], guanine [G], adenine [A] or thymine [T]), a sugar called deoxyribose, and a phosphate group.

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4
Q

What are the 3 parts that make up nucleotides?

A

Nucleotides form the basic structural unit of DNA.
- Nucleotides made up of 3 parts:
1) Deoxyribose (5’ C sugar)
2) Phosphate group
3) Cyclic amine (nitrogenous base)

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5
Q

What are the bonds used to join one nucleotide to the other?

A

Nucleotides joined to one another in a chain by covalent bonds (known as the phospho-diester linkage) between the sugar of one nucleotide and the phosphate of the next, resulting in alternating sugar-phosphate backbone.

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6
Q

How are nitrogenous bases bound together?

A

Nitrogenous bases of the 2 separate polynucleotide strands are bound together, according to base pairing rules (A with T, C with G) with hydrogen bonds to make double-stranded DNA.

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7
Q

In what direction do the strands run?

A

Strands are antiparallel run in opposite directions. One runs 3’ to 5’ the other runs 5’ to 3’.

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8
Q

How do DNA strands run in antiparallel and what is its purpose of it?

A

Done by sugar phosphate backbone twisting around itself in a coil.
Purpose of twisting to protect the bases inside it and prevent them from being damaged by environment.

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9
Q

What are the 4 nucleotides called? And what replaces thymine during RNA?

A
  • A = Adenine
    • T = Thymine
    • G = Guanine
    • C = Cytosine

RNA only: U= Uracil (replaces T)

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10
Q

What bond is used to hold bases?

A

Bases of one strand pair up with bases of another strand by hydrogen bonds.

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11
Q

Which bases are purine and which bases a pyrimidine?

A

Purine:
- Adenine
- Guanine

Pyrimidine:
- Thymine
- Cytosine

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12
Q

A purine must be base paired to a pyrimidine so what are A, T , G and C paired with and how much hydrogen bonds are between each pair?

A

A purine must always be base paired to a pyrimidine:
- A pairs with T (2 hydrogen bonds)
- G pairs with C (3 hydrogen bonds)

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13
Q

What does complementary mean?

A

Complementary: when you read the message on the one strand you automictically know the message on the other strand. NOT IDENTICAL but exact same message on both strands.

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14
Q

What did Rosalind franklin find out about DNA?

A
  • 1953
  • Crystallized DNA and x-ray diffraction
  • It was clear that DNA was in a helix with symmetrically organized bases in centre
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15
Q

What did Watson and Crick suggest about DNA and what is there molecular model of DNA based on?

A

DNA is a double helix:
- James Watson and Francis Crick (1953) suggested double-helix model of DNA structure.
- Their molecular model of DNA was based on (a) X-ray diffraction image taken by Rosalind Franklin, Maurice Wilkins and Raymond Gosling and (b) the complementary base pairing in DNA.

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16
Q

Who discovered complementary base pairing and what did they discover and observe?

A

Complementary base pairing:
- 1950: Erwin Chargaff
- Erwin Chargaff discovered that the percentages of adenine (A) and thymine (T) bases are always equal in any sample of DNA
- Same thing true for other 2 nucleotides as well, guanine (G) and cytosine ( C)
- Observation that A = T and G = C became known as one of ‘Chargaff rules’

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17
Q

What is a chromosome?

A

Chromosome: a thread-like structure of nucleic acids and protein found in the nucleus of most living cells, carrying genetic information in the form of genes.

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18
Q

What does eukaryotic chromosome consist of?

A

Each eukaryotic chromosome consists of long linear DNA molecule associated with proteins, forming a compact complex of proteins and DNA called CHROMATIN.

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19
Q

What does chromatin contain and how is it inherited?

A

Chromatin contains the vast majority of DNA of an organism, but a small amount inherited maternally, can be found in the mitochondria. It is present in most cells, with few exceptions, for examples, red blood cells.

20
Q

Where can eukaryotes been found?

A

Eukaryotes (cells with nuclei such as those found in plants, fungi and animals) possess multiple large linear chromosomes contained in the cell’s nucleus

21
Q

What are chromosomes made up of?

A
  • Each chromosomes is made up of DNA tightly coiled many times around proteins called histones that support its structure.
22
Q

What are histones responsible for?

A

Histones are responsible for first and most basic unit of chromosome organization, the nucleosome.

23
Q

How many pairs of chromosomes are in humans?

A

In most cells, humans have 22 pairs of these chromosomes and the 2 sex chromosomes (XX in females and XY in males) for total of 46 per cell.

24
Q

What type of point does each chromone have and what is it divided into?

A

Each chromosome has a constriction point called the centromere which divides the chromosome into 2 sections or ‘arms’.

25
Q

What is the short arm of chromosome labelled as?

A
  • Short arm of chromosome is labelled the ‘p arm’
26
Q

What is the long arm of chromosome is labelled as?

A

Long arm of chromosome is labelled the ‘q arm’

27
Q

What does the location of centromere on each chromosome show?

A

Location of centromere on each chromosome gives chromosome its characteristic shape, and can be used to help describe the location of specific genes.

28
Q

Why is DNA condensed and what does it form?

A
  • DNA is a very long molecule so to fit into the nucleus it must be condensed
  • Forms ‘beads on a string’
  • Beads = Nucleosomes
  • Nucleosomes coil into chromatin
  • Chromatin is condensed into chromosomes
29
Q

What is DNA replication?

A

DNA replication is biological process of producing 2 identical replicas of DNA from one original DNA molecule.

30
Q

Why is DNA replication important (3 things)?

A

1) To make new (identical) copies of chromosomes for cell division (growth)
2) To help maintain continuity of genetic information (reproduction)
3) Continuous surveillance of DNA and its repair

31
Q

What is an original DNA template - first requirement for DNA replication?

A

Original DNA template: DNA is a double helix made of 2 complementary strands. Each strand can be used as a template create a new DNA molecule.

32
Q

Why are free DNA nucleotides needed - second requirement for DNA replication?

A

Free DNA nucleotides: needed to form the new strands

33
Q

What is the third requirement for DNA replication?

A

Replication enzymes

34
Q

The fourth requirement for DNA replication is primers and why are they needed?

A

Primers: needed to start the process cus DNA polymerase can only add nucleotides to an existing strand of DNA.

35
Q

What is the semi-conservative theory about>?

A

Semi-conservative: The one Watson and Crick suggested where the 2 strands of a DNA molecule separate during replication. Each strand then acts as a template for synthesis of new strand.

36
Q

What is the conservative theory?

A

Conservative: make copy of double strand from double strand (without splitting). The conservative hypothesis proposed that the entire DNA molecule acted as a template for the synthesis of an entirely new one.

37
Q

What is the dispersive theory?

A

Dispersive: production of 2 copies of the DNA, both containing distinct regions of DNA composed of either both original strands or both new strands.

38
Q

What is the meselson and stahl do?

A

Meselson and Stahl:
- 1957
- Density shift experiments
- Labeled DNA with ‘heavy’ nitrogen
- Follow label:
Does it split equally = semi-conservative
Does it stay together = conservative
Does it spilt randomly = dispersive

39
Q

What experiment did Meselson and stahl do?

A

Meselson and Stahl 1954:
- Growth of E. Coil in medium or nutrient broth, containing a ‘heavy’ and light isotope of nitrogen, 15N, 14N
Measurement of DNA’s density using density gradient centrifugation (cesium chloride)

40
Q

What is the 3 main steps in the replication process?

A

Replication:
3 main steps in replication process:
1) Initiation
2) Elongation
3) Termination

41
Q

What are the 3 steps for replication fork formation?

A

Replication fork formation:
1) DNA replication starts with a single of DNA made up of 2 complementary strands.
2) Before replication begins, ds DNA must be unzipped into 2 single strands.
3) The helix structure is unwound by breakage of weak hydrogen bonds between bases, which are holding the 2 strands together. Process occurs at several locations on DNA molecule

42
Q

What does the DNA helicase disrupt and what does it form?

A

DNA helicase:
Disrupts the H bonding between base pairs separating thus, the 2 strands into a Y shape known as replication fork.
Area will now be template for replication to begin.

43
Q

What does the 5’ to 3’ strand signify and what group is at the 5’ end and 3’ end?

A
  • DNA is directional in both strands 5’ to 3’ , which signifies which side group is attached to the DNA backbone.
  • The 5’end has a phosphate group attached while the 3’end has a hydroxyl group attached.
44
Q

What is direction is the leading strand and what direction is the lagging strand?

A
  • Leading strand 5’ to 3’
  • Lagging strand 3’ to 5’
    This is directionally is important for replication as it only progresses in the 5’ to 3’ direction
45
Q
A