Task 1 Flashcards

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1
Q

What are eukaryotes? (Nettle)

A

Cell of animals and human (involving nuclei and mitochondria), prokaryotes for bacteria

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2
Q

What are eukaryotes made up off? (Nettle)

A

Out of proteins which in turn are made out of chains of amino acids; there are 20 types of them and their sequence, determine what properties the proteins will have

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3
Q

What are the proteins main functions in cells like eukaryotes? (Nettle)

A

1) giving cells their shape,
2) Form Connection tissues,
3) hormones/antibodies or enzymes

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4
Q

What 3 phases mark the history of genetics? (Nettle)

A
  1. Classical genetics: concept of gene made by Mendel, found out what genes did, not what made of yet;
  2. Molecular genetics: the DNA was found and Watson and Crick made research about resolution of it (1953). Finally understanding of how genes encode and transmit info;
  3. Genomics: around 80s with technology could read DNA sequences directly.
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5
Q

What are the 3 principles of genetics? (Nettle)

A
  1. Genes - particles of inheritance passed on from parents to offspring, determining phenotypical characteristics
  2. Alleles - alternating form in which genes come in,
  3. Individuals have 2 copies of each gene, one copy from each parent (diploid-sexual)
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6
Q

What are organisms with one and with two copies of each gene called? (Nettle)

A

Haploid - one copy (asexual)

Diploid - two copies (sexual)

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7
Q

What are the two functions of genes? (Nettle)

A
  1. Influence physical characteristic of individual (phenotype) through the genotype.
  2. Info passes from parent to offspring by replicating themselves to produce new individual with the same genotype
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8
Q

What is the central dogma of genetics? (Nettle)

A

Changes in DNA sequence can lead to changes in proteins, but changes in proteins cannot change sequence of DNA

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9
Q

What are somatic cells? (Nettle)

A

Cells of the body other than the gametes -> making more phenotypes (e.g. cells in skin)
- Mitosis

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10
Q

What are gametes? (Nettle)

A

Cells that can make another being, produced by meiosis (e.g. spermcells)
-> carry half a genome

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11
Q

Where can DNA be found?

A

In the nucleus, wound around histones, often configurates into chromosomes. In diploid organisms, come in pairs-> humans have 23 pairs: 46 chromosomes (22 are autosomes and 1 pair is sex)

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12
Q

How does base pairing look like for DNA?

A

Just C binds to G and A to T. Because of that 2 strands mirror each other ( double helix). They are bound together through weaker, hydrogen bonds

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13
Q

What are codons?

A

Triplets of bases coding for a specific amino acid.

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14
Q

What is a genetic code?

A

Mapping from particular codons in mRNA to particular amino acids, in the assembled proteins (e.g. GCC = Alanine)

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15
Q

What is Mitosis?

A

Normal cell division process whereby a cell produces a daughter that is genetically almost identical to itself

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16
Q

What is Meiosis?

A

Special cell division process that produces a haploid gamete from a diploid cell -> recombination occurs during meiosis

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17
Q

What is DNA?

A

Deoxyribonuceleic acid: long-chain molecule entailing 2 strands bound to each other and twisted around each other in a double helix
- each strand is made up of a backbone of sugar and phosphates

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18
Q

How can DNA make phenotypic material?

A
  1. The 2 strands are broken apart and a single-strand molecule called messenger RNA forms along the anti-sense strand of the open DNA
  2. RNA is chemically similar to DNA, but the T base is replaced by U (Uracil)
    - Transcription & Translation
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19
Q

What is Transcription?

A

The process of copying DNA sequences into sequences on a RNA molecule -> takes place in the nucleus

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20
Q

What is Translation?

A

The RNA zips itself back up and is transported outside the nucleus into ribosomes that build proteins with the help of amino acids

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21
Q

How is the genetic code robust to errors?

A

Through synonymous and nonsynonymous substitutions

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22
Q

What is a synonymous substitution?

A

Reading the third base wrongly won’t affect the amino acid sequences

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23
Q

What is a nonsynonymous substitution?

A

Error in reading the first base leads to a chemically similar amino acid

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24
Q

What are Exons?

A

Codons that are translated into proteins

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25
Q

What are Introns?

A

Non-coding sequences, usually transcribed but not translated

26
Q

Are there more Introns or Exons?

A

In general, there tend to be much more introns than exons and only just over 1 % of the genome actually code for proteins

27
Q

What could be the function of non-coding DNA?

A
  • is also transcribed into RNA and may have regulatory functions
  • may also enhance genome’s evolvability
  • transposable elements promote the reshuffling and reduplication of genetic material during meiosis
28
Q

How does sexual reproduction ‘shuffle’ the genes?

A
  1. Recombination/Crossing-over
  2. Independent segregation and linkage
  3. Transposable element insertions and segmental duplication
  4. Whole genome duplication
29
Q

What is polymorphism?

A

A locus for which there is more than one allele in the population
-> most has no phenotypic effect, but are also harmful

30
Q

What types of polymorphism are there?

A
  1. Single nucleotide polymorphism
  2. Single sequence repeats
  3. Segmental duplications
  4. Different genomes between two copies
31
Q

How does the process from Genotype to Phenotype look like?

A
  1. DNA sequence change –(transcription and translation)–>
  2. Amino acid change –(Phenotypic function of protein)–>
  3. Phenotypic change
32
Q

What types of studies are used to hunt genes?

A
Linkage studies (w/ families)
Association studies  (w/ many participants)
33
Q

What are polygenic traits?

A

Variation in the phenotype is related to which allele is present across a number of genes (e.g. height)

34
Q

What did the study on prairie voles (PV) show regarding genes and behavior?

A

Prairie voles (rodents) form long-term bonds after mating

  • Hormone arginine vasopressin causes a pair bond to form -> released in male’s brain on mating with the female
  • The gene that produces V1a has been localised
  • > Young created genetically engineered mice that had the PV version of this sequence  behaviour changed
35
Q

What human study showed the linkage between genes and behavior?

A

Monoamine oxidase A gene study
-> Dutch family in which males had several conduct disorders missed MOAO activity (enzyme helps regualte serotonin) due to gene base changes

36
Q

What is a point mutation?

A

A change in a single nucleotide pair of a gene

37
Q

What are single nucleotide pair substitutions?

A

Substitutions of one base pair for another because of errors when DNA is copied

38
Q

What types of single nucleotide pair substitutions are there?

A
  1. Transitions - changes between C/G or G/A
  2. Transversions -interchanges of purine for pyrimide bases
  3. Deletion of a base
39
Q

What is a silent mutation?

A

Substitutions that have no effect on the encoded protein

40
Q

What is a missense mutation?

A

Substitution that changes one amino acid to another one

41
Q

What is a Nonsense mutation?

A

A mutation that causes translation to be terminated prematurely

42
Q

What do nucleotide pair insertions or deletions cause?

A

Frameshift mutations, which alter the reading frame of the genetic message;

43
Q

What are mutagens?

A

A number of physical and chemical agents which interact with DNA in ways that cause mutations

44
Q

What is differential gene expression?

A

Almost all cells contain an identical genome -> the differentiation into functions occurs because different subsets of genes are expressed.

45
Q

What do chromatin-modifying-enzymes do?

A

They provide initial control over gene expression by making a region of DNA more or less able to bind to a transcription machinery.

46
Q

What happens during histone modification?

A

Acetyl groups attach to the lysine of histone tails

47
Q

What happens during histone acetylation?

A

Acetyl groups attach to the lysine of histone tails

48
Q

What happens during histone deacetylation?

A

Acetyl groups are removed from the tails

49
Q

What does histone methylation do?

A

It promotes condensation of the chromatin

50
Q

What does the histone code hypothesis suggest?

A

It proposes that specific combinations of modifications help determine chromatin configuration and influence transcription

51
Q

What happenes if DNA is methylated?

A

If you have a methylated regulator in front of a gene, it represses gene expression, by lowering the amount of mRNA; which lowers protein
-> de-methylated regulated DNA enhances gene exlression

52
Q

What is Epigenetic inheritance?

A

Traits transmitted by mechanisms that don’t directly involve the nucleotide DNA sequence

53
Q

How can chromatin structure be regulated?

A

Through histone modification and DNA methylation

54
Q

How is transcription initiation regulated?

A

Via proteins that bind to DNA and either facilitate or inhibit binding of RNA polymerase

55
Q

What is DNA methylation?

A

Tagging specific points in the DNA molecule with a methyl group that silences the genes -> effects are reversible, which helps individuals change when their surroundings change

56
Q

What is the relationship between DNA methylation and histone modification?

A

They interact with and depend on each other, even though they have somewhat opposite effects

57
Q

How durable are DNA methylation and histone modificaiton?

A

DNA methylation: imposes permanent (or at least stabe) regulation
Histone modification: is more labile and reversible

58
Q

What evidence was found concerning epigenetics and food?

A

Agouti Mouse Clone - mutant code turned many yellow; food with extra methyl -> turned mutation off and coat in offspring was brown
Dutch famine - methylation of IGF2 gene was decreased in people whose mothers starved first three months of pregnancy

59
Q

What happens in rats who are nurtured less?

A

Increased methylation of the gene for BNDF, which is a neural growth factor in the prefrontal cortex or in reduction of glucocoricoid receptors (important for immune system)

60
Q

How can the increased methylation of the gene for BNDF in rats be explained?

A

Chronic stress triggers an increase in histone methylation that suppresses gene activity by keeping the DNA containing BNDF tightly wound