SUGER Flashcards
3 categories of genetic disease
Mendelian genetics - single faulty gene (rare)
Complex trait genetics - multiple genes (common)
Somatic genetics - cancer
Summarise the human genome project
2001 - 90% complete
2004 - 99.7% complete
2011 - found less expected genes (21000), RNA, non-coding sequences, splicing allows more proteins to be coded for, regulatory sequences
2022 - only 5 gaps left
Define rare
1/2000 (Europe) or 1/1250 (USA)
-> 3 million in UK affected
What is ADPKD?
(Autosomal Dominant Polycystic Kidney Disease)
= Enlarged kidney with lots of holes
Disease Incidence - 1/500-1000
- Polycystin 1 + 2 genes mainly
-4th most common cause of kidney failure
-Has extrarenal manifestations e.g. intracranial aneurysms, pancreatic cysts, liver cysts etc
Treatment - vasopressin-2 receptor antagonist (ADH inhibitor)
What is tuberous sclerosis?
Develops kidney cysts, mixed tissue tumours, brain lesions, epilepsy, renal cysts, mental retardation
Very variable expressivity!
2 main genes - TSC1, TSC2
Treatment - everolimus
4 Functions of the kidney
Endocrine (secreting hormones)
Excreting waste + excess fluid
Maintain balance of salt, water, pH
Filtration + removal of drugs
Name the components of the kidneys
Cortex - glomerullus, proximal, distal convoluted tubules
Medulla - loop of Henle, collecting ducts
How much renal blood and urine flow per minute?
(Cardiac output ~ 5L/min)
Renal blood flow = 1.25L/min
Urine flow ~ 1ml/min
Describe arteries in kidneys
Renal -> Interlobar -> Arcuate -> Interlobular -> Afferent -> Glomerular -> Peritubular
How is juxtaglomerular specialised?
Contains macula dense and modified layer of afferent arteriole (increased smooth muscle , granules containing renin and acts as barometers to decreased change in bp)
What are the 2 mechanisms for intrinsic auto regulation of the kidneys?
Tubuloglomerular feedback- macula dense release prostaglandins to reduce NaCl and activate renin-angiotensin system
Moygenic mechanism - increased bp stretches vessel wall = triggers contraction and increases resistance so lowers bp. Vice versa
= Maintains GFR and excretion of water/waste
What are the 3 layers of glomerulus filtration barrier?
Capillary endothelium
Basement membrane
Foot processes of podocytes
(Fluid from blood to Bowman’s capsule to form filtrate)
What 5 factors determine filtration (of glomerullus)?
- Pressure (Hydostatic>osmotic)
- Size of molecule < 10kDa
- Charge of molecule (-ve harder to pass)
- Rate of blood flow (slow allows more)
- Binding to plasma proteins e.g. ca, thyroxine (protein/albumin don’t normally pass)
Define glomerular filtration rate
= Filtration volume per unit time (120ml/min)
(Kf is filtration coefficient)
What 3 factors is GFR determined by?
- Net filtration pressure (Back flow due to constriction of efferent increases vice Vera)
- Permeability of filtration barrier
- Surface area
How does sympathetic innervation affects GFR?
Strong sympathetic to arterioles = constrict = decrease renal blood flow = decrease GFR
Important in bleeding, shock ..
How is GFR measured?
(NOT measured directly)
Marker = filtered freely, not metabolised/absorbed/secreted
= creatinine (natural)
= Cystatin C
= Inulin infusion
Define renal clearance
All plasma that is filtered of marker
= 125ml/min (=GFR)
Clearance = urine conc x volume
——————————
Plasma conc
Describe the function of proximal tubules
Actively reabsorbs all glucose, amino acids, phosphate, HCO3
Na gradient generated by Na/K ATPase
Metabolically active - lots of mitochondria
Vulnerable to hypoxia(low O2) and toxicity(filtering toxins)
What is renal glycosuria disorder?
Sodium glucose transporters (SGLT2) is defect so glucose is not reabsorbed in proximal tubules = sugar in urine
SGLT2 inhibitor used for treating type 2 diabetes, heart failure and Chronic kidney disease
What are aminoacidurias disorders (e.g. cystinuria)
Renal basic amino acid transported (rBAT) is defect so amino acid is not reabsorbed = clumps of AA= cystine crystals and kidney stones form
Treatment
= High fluid intake - High urine flow
= Alkaline urine - increases solubility
= Chelation - binds to cystine
What is hypophosphataemic rickets?
Commonest form is XLH
Zinc dependent metalloprotease (PHEX) defect means phosphate cannot be reabsorbed = passed out
Treatment = phosphate replacement
Describe bicarbonate reabsorption in proximal tubules
H20 + CO2 form carbonic acid and splits via carbonic anhydrase to form H+ and HCO3- in tubular cells
H+ is exchanged with Na+ in tubular lumen
Na+ and HCO3- move into the blood from the tubular cells
What is proximal renal tubular acidosis (type 2)
Na/H anti Porter between tubular cell and lumen is defected = Bicarbonate is not reabsorbed
Treatment = supplementation
What does a defect in carbonic anhydrase affect?
= Mixed proximal / distal renal tubular acidoses
Inhibited by acetazolamide (mild diuretic and induces metabolic acidosis)
Also used to treat altitude sickness
What is the Fanconi syndrome?
All solutes not reabsorbed in proximal tubules may be due to Na/K ATPase failure
What is the function of the loop of Henle?
Generates medullary concentration gradient
= ascending actively reabsorb Na+ and cl- in but is impermeable to water so lumen osmolality decreases.
= Water from permeable descending limb moves into lumen
= continuous flow pushes hyperosmotic fluid to ascending limb.
Also voltage dependent ca2+ and Mg2+ absorption
What is Barters syndrome?
Defect in Na+/K+/Cl- transporters in ascending limb of loop of Henle = salt wasting
Treatment = block Na+ transporters due to Na+ overload
Describe the functions of distal tubule and collecting ducts
Fine tuning of Na+, K+ reabsorption and acid-base balance.
Collecting ducts mediates water reabsorption (principal cells) + acid secretion (intercalated cell)
Name some distal tubular and collecting ducts disorders
Gitelmans syndrome
Distal (type 1) renal tubular acidosis
Hyperaldosternosim
Type 4 renal tubular acidosis
Nephrogenic diabetes insipidus (failure of water reabsorption)
Liddle’s (More Na+, less K+ absorption due to mutation)
Describe different pathways for fall in bp
Aorta: baroreceptors increase sympathetic to increase HA and vasoconstriction
Kidney: JGA secretes renin which convert angiotensinogen to angiotensin 1->2. Causes vasoconstriction and releases aldosterone
Describe actions of aldosterone
(Steroid hormone acts on transcription)
Clings onto Na+ and exchanges it for K+ or carbonic acid
= more Na+ in blood so more water
What is distal (type 1) renal tubular acidosis?
H+ATPase or H+/K+ ATPase defect in distal/collecting ducts so failure of urinary acidification
(Due to high aldosterone)
What is glucocorticoid remediate aldosteronism?
Too much aldosterone
Treatment = ATCH suppressors stops producing aldosterone
What is Liddell syndrome?
Mutated epithelial Na+ channels so constant aldosterone effect
What is syndrome of apparent mineralcorticoid excess?
Cortisol not broken down so activates mineralcorticoid receptors
What is hyperkalaemic distal (type 4) renal tubular acidosis
Low aldosterone levels due to reduced electrochemical gradient
What is nephrogenic diabetes insipidus?
Vasopressin 2 or Aquaporin 2 channels defect so water is not reabsorbed = very dilute urine
Acidosis vs Alkalosis
Acidosis - makes blood more acidic
Alkalosis - makes blood more alkaline
Consequences of acidosis vs alkalosis
Acidosis - Hyperkalaemia, bone growth disorder, neurological, arrhythmia etc
Alkalosis - Hypokalaemia, myocardial depression, tetany etc
Factors affecting pH
CO2 conc
Intrinsic (metabolic products)
Extrinsic acid (diet, toxins)
Buffers (HCO3-)
Give 3 forms of the Henderson-Hasselbalch equation
pH = pKa + log([A-]/[HA])
pH = pKaH2CO3 + log([HCO3-]/[H2CO3])
pH = 6.1 + log([HCO3-]/0.03xpCO2)
Describe Stewart’s strong ion principle
pH and HCO3- are dependent variables governed by:
pCO2
Weak acid (ATOT) conc
Strong ion difference (SID) - Na+, K+ e.g.
What do we measure in ABG?
pH
pCO2
pO2
HCO3-
Base excess
What is standard bicarbonate?
Affected by both respiratory and metabolic so measure acid-base.
Standardised at temp 37, 5.3kPa pCO2
What is base excess?
Quantity of acid required to return pH to normal under standard conditions
(Negative in acidosis)
Describe metabolic acidosis
= Renal failure, HCO3- loss, H+ retention
= Low pH, HCO3-, CO2
Sighing respirations, tachypnoea
Hyperventilating to increase CO2 output
Long term - muscle wasting, growth retardation
How can we investigate acid-base disorders?
Anion gap = [Na+] + [K+] - [Cl-] - [HCO3-]
= difference between anions - and cations +
Normal = 10-16
Disorders with high anion gap
Renal failure
Lactic acidosis
Ketoacidosis
Acid ingestion
Disorders with normal anion gap
Diarrhoea
Renal tubular acidosis
Urinary diversion
Describe metabolic alkalosis
Causes - alkali ingestion, GI acid loss (vomiting), Renal acid loss
= Hypoventilation and renal bicarbonate excretion
= High pH, HCO3-, CO2
Describe respiratory acidosis
CO2 retention (hypoventilation, COPD) leads to increased carbonic dissociation
Causes - any respiratory failure
= Increased renal H+ excretion and HCO3- retention
= Low pH, High HCO3-, Co2
Describe respiratory alkalosis
CO2 depletion due to hyperventilation, hypoxia
Causes - type 1 respiratory failure, anxiety
= increased Renal bicarbonate loss, H+ retention
= High pH, Low HCO3-, CO2
Where do renal and genital systems develop from? (Embryology)
The intermediate mesoderm form metanephric tissue (genital) and gonad tissue (renal)
What are the 3 stages of kidney development?
(Cranial to caudal)
1. Pronephros forms and regresses at week 4 (non-functional)
2. Meseonephros- appears week 4, regresses in females but persists in males = vas deferents
3. Metanephros - week 5 (definitive kidney)
Describe the mesenephros stage
Excretory tubules develop (to bowman’s capsule) with capillaries (to glomerulus)
(Collecting duct called the mesonephric duct)
Gonad starts to develop
Females - all degenerate
Males - tubules = duct of testes
Mesonephric duct = vas deferens
Describe the metanephros stage
Definitive kidney develops in pelvic region and functions at week 12 gestation
What does ureteric bud develop to?
Grows out from the mesonephric duct and covered by cap of metanephric tissue.
Bud grows into renal pelvis -> major and minor calyx and Collecting tubules
What does the metanephric bud develop to?
Development promoted by cell clusters and renal vesicles
= forms nephrons
Why is the ureteric bud and metanephric tissue dependent of each other?
They signal each other to continue developing
Do foetal kidneys ascend or descend in utero?
Ascend
What is it called if kidneys don’t develop?
Renal a genesis
(Unilateral if one not developed or bilateral if two)
If signalling between ureteric bud and metanephric tissue fails so nephrons and collecting ducts don’t develop
Horseshoe vs pancake kidney
H - Lower poles of kidneys fuse
P - Both upper and lower poles fuse medially
Usually asymptomatic
Is polycystic kidney disease genetic or environmental?
Genetic (autosomal / recessive)
Cysts form large kidneys
How do polar arteries form?
As kidneys ascend lower vessels normally regres.
However these vessels persist = polar
Describe development of the bladder
Cloaca = common terminal cavity for urogenital system and gut
Urorectal septum tissue grows down and separates urogenital sinus and anal canal.
What does the urogenital sinus form?
- Upper part = bladder
- Pelvic part = urethra
- Phallic part = penile urethra in males/ vestibular vagina in females
Describe development of the ureter
Ureteric bud and mesonephric duct connect to bladder wall
(Ureteric bud forms ureter)
Double vs ectopic ureter anomalies
D - ureteric bud splits early
E - development of two ureteric bud (one enters urethra, vagina or epididymis)
Describe embryology of the pancreas
At junction of forest and midgut, 2 pancreatic ducts are generated and fuse to form a pancreas
Exocrine functions begin after birth
Endocrine functions from 10-15 weeks
What does the pancreas consist of?
Small clusters of glandular epithelial cells
98-99% = acini cells- manufacture and secrete fluid digestive enzymes in the pancreatic juice (exocrine)
2-3% = Islet cells - manufacture and release peptide hormones (endocrine)
Name 3 types of cells in islets of langerhans
Beta - secrete insulin (51 amino acids)
= glucose uptake, lipid + protein synthesis
Alpha - secret glucagon (29 aa)
= glycogenolysis, gluconeogenesis, lipolysis
Delta - secret somatostatin (inhibitor)
Describe insulin secretion in the Beta cells
GLUT2 transporters uptake varies with the glucose concentration outside.
Phosphorylated by glucokinase to glucose 6-phosphate
Rate of glycolysis is increased
ATP generated closes KATP channel, stopping efflux of K+
depolarises the membrane, opening voltage-dependent Ca2+ channels, allowing influx of calcium
This triggers insulin exocytosis from primed secretory granules
Describe structure of insulin
Pro insulin is released
Contains A chain (21) and B chain (30 amino acids) is joined by C peptide
(If C peptide not present = not made body)
Describe biphasic insulin release
B- cells sense rise in glucose and rapid release of stored products
Second phase response is slower and releases newly synthesised hormones
= Exocytosis of GLUT4 vesicles, increases glucose transporters in the cell membrane and rapid uptake of glucose
What is normal blood glucose levels?
~5mmol/mol
Short term response - glycogenesis/ glycogenolysis
Long term response - lipogenesis/ gluconeoenesis
Where are glucose sensors?
Primary - pancreatic islets
Also in medulla, hypothalamus, carotid bodies
Sensory cells in gut wall stimulate insulin increase = incretins
What do incretins cause and how do we turn it off?
Gastric delaying stimulates insulin release
DPPIV turns off incretins and prevents hypoglycaemia
What is diabetes?
A disorder characterised by hyperglycaemia
Type 1 - mutation means K+ channels don’t close so insulin isnt released
Type 2 - insensitivity to insulin
What is the genital ridge?
= ridge of mesenchyme + epithelium
(Develops from intermediate mesoderm)
What do primordial germ cells do (PCGs)?
Migrate to genital ridges in week 6 and crucial for gonads to develop + forming primitive sex cords.
What happens to primitive sex cords in males?
Continue to develop and form Sertoli cells + germ cells (to form testis cords) + leydig cells (produces testosterone at week 8)
What happens to primitive sex cords in females?
Primitive sex chord regresses and cortical cord develops instead. These divide and surround germ cells = primordial follicle
What is an indifferent gonad?
Sex is determined at fertilisation but gonad is identical in males and females until week 7.
= two pairs of ducts (mesonephric + paramesonephric)
What does SRY stand for?
Sex Coding region on Y chromosome
Describe male differentiation of gonads at week 7
Sertoli cells release Anti-mullerian hormone = paramesonephric duct regresses
SRY = testes develop
Testosterone = forms vas deferens
Describe female differentiation of gonads at week 7
Less understood
Absence of SRY, but WNT4 gene for ovarian development
Oestrogen = female differentiation and paramesonephric ducts develop
Describe development of mesonephric ducts in males
Duct opens into prostatic urethra = ejaculatory duct
Prostate develops around ejaculatory duct and seminal vesicles develop from vas deferens
Describe development of paramesonephric ducts in females
Upper parts = form uterine tubes
Caudal parts fuse = form uterus, cervix, upper vagina
Urogenital sinus = lower vagina
Growth of sinovagial bulbs = lumen develops
What is atresia?
Lower vagina doesn’t form if sinovial bulbs don’t develop
How does oestrogen influence female external genitalia
Genital tubercle = clitoris
Urethral folds = labia Minorca
Urethral groove = vestibule
Genital swelling = labia majors
How does testosterone influence male external genitalia
Genital tubercle = glans
Urethral folds = fuse to form penile urethra
Genital swellings= scrotum
What are produced in the testes?
Spermatozoa by seminiferous tubules
Testosterone by leydig cells
Describe the structure of the testes
Covered by extension of peritoneum = tunica vaginalis
White fibrous capsule = tunica albuginea
Septa divides testes into compartments containing seminiferous tubules which drain into rete testis. Leydig cells lay between tubules.
Sertoli cells promote sperm development and separate it from immune system = blood brain barrier
Why is scrotum outside the body?
Testicular thermoregulation is necessary since sperm is produced at lower than body core temperatures
(Arteriole blood cools as it descends)
Why does meiosis occur?
To keep chromosome number constant after fertilisation from generation to generation
(= 4 haploid cells prevents polyploidy)
Also increases genetic variability and chromosomal combinations
Type A vs type B cells in spermatogenesis
A - mitosis and remains outside blood-testis barrier
B - differentiate into primary spermatocytes and pass BTB to enter lumen. Meiosis 1 = secondary spermatocytes. Meiosis 2 = spermatids
What is spermiogenesis
Transforms spermatids (haploids) into spermatozoa (sprouts tail and discards cytoplasm to become lighter)
Difference between male and female gamete production
Male - mass production but not perfect process (75million in an hour)
Female - 1 egg per month per perfect
What is the blood testes barrier formed from?
Sertoli cells (if not present = infertile)
How long does spermatogenesis take?
64 days
Describe the hypothalamo-pituitary-testicular axis
Hypothalamus produces GnRH
-> Anterior pituitary gland release FSH (so Sertoli cells inhibit HP) and LSH (so leydig cells produce testosterone= inhibits)
= For spermatogenesis
Describe the structure of a spermatozoon
Head
Tail
Describe spermatic ducts
Efferent ductules
- 12 small ciliated ducts from rete teste
Epididymis
- 6m long tube site of maturation and storage on (fertile for 40-60 days)
Vas deferens
- from scrotum to bladder
Ejaculatory duct
-from vas deferens and seminal vesicles to urethra
Describe composition of semen
10% sperm
30% prostatic fluid
60% seminal vesicles fluid
(Fructose, fibrinogen e.g.)
Describe the menstrual cycle
- Hypothalamus- GnRH to AP
- Anterior Pituitary- FSH (matures follicles in ovary and thickening of uterus)
- Oestrogen released (thickens endometrial and causes LH release)
- Anterior pituitary- LH (causes ovulation at day 14)
- Empty follicle releases progesterone= endometrium stays thick