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Medical Genetics - BL > Study Guide > Flashcards

Study Guide Flashcards

1
Q

what was the 1 gene hypothesis? did it turn out to be correct?

A

hypothesis: genes make proteins - one gene = one protein

not correct - 1 gene codes for at least 10 proteins and with alternative splicing - one gene encodes for multiple RNAs

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2
Q

SNPs and other mutations were thought to be the sole cause of human variation, was this assumption correct?

A

FALSE - humans have minimal gene variation, variation is dt gene regulation and the epigenome

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3
Q

how much of the human genome is protein coding? how much is retroviral?

A

4% protein coding

10% retroviral

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4
Q

in what people and country does most of the variability in the human genome still reside?

A

San Bushmen of East Africa

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5
Q

how are mitochondrial DNA and Y chromosome DNA different and how are they used in migration studies?

A

comparing the mtDNA ‘age’ with the number of mutations on the Y chromosome, the time frame and direction of migration can be determined. mtDNA allows us to estimate the age of a species

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6
Q

what did the story about Koko and her cat suggest about human behavior?

A

??

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7
Q

what are the 3 main problems with trying to determine the cause vs correlation in genetic dz with genetic studies like the GWAS?

A

chance (variant mb found by random chance)
linkage (study bias - variant is next to the dz causing segment but does nothing on its own)
stratification (an ethnic group has concentration of the variant and the disease but they aren’t linked)

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8
Q

what is the first point of control and how does it work?

A
  1. chromatin: histone methylation, target sites of histone methylation are cytidines which exist as CG (CpG, areas w/lots are called CpG islands); methylation of CpG regulates transcription; histone acetylation stops further condensing of DNA which encourages active transcription
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9
Q

what does methylation do? what does demethylation do?

A

generally methylation upregulates transcription and demethylation inhibits transcription

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10
Q

what groups modify histones?

A

methyl, acetyl and phosphate groups modify histones

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11
Q

what is the second point of control and how does it work?

A
  1. transcription - promoters CCATT and TATA boxes, all in protein coding genes, exon shuffling, enhancers (transcription factors bind to enhancer regions)
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12
Q

what is the third point of control and how does it work?

A
  1. translation - RNA transport (exportins); importins and exportins are regulated by GTPases called Ran
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13
Q

what is the fourth point of control and how does it work?

A
  1. post-translation into cytoplasm - cap/tail communication
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14
Q

what is the fifth point of control and how does it work?

A
  1. post-translation modification
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15
Q

TATA and CCATT boxes are examples of what?

A

promoter regions

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16
Q

what is exon shuffling and which part (exon or intron) remains as a section of the mRNA?

A

EXONS
molecular mechanism for the formation of new genes, it is a process through which two or more exons from different genes can be brought together ectopically or the same exon can be duplicated to create a new exon-intron structure

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17
Q

what are enhancers? what is the role of enhancer regions?

A

enhancers - short (50-1500 bp) region of DNA that can only be bound by proteins (activators) to increase the likelihood that transcription of a particular gene

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18
Q

what are the 3 major types of molecular groups that modify histones and cause epigenetic effects?

A

methyl
acetyl
phosphate

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19
Q

which epigenetic marker can attach to DNA directly?

A

METHYLATION

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20
Q

when looking at a cartoon or ideogram of a chromosome, how can you tell the locus from the gene? (know the abbreviations for each; for instance is EPO the gene or the locus? look at slide 7 lecture 3)

A

the locus is marked by “p” or “q” followed by a number
genes are marked by acronyms given by their discoverer
so EPO is the gene

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21
Q

what are DNA marker alleles? are they necessarily involved in the transcription or biologically active?

A

any gene or allele that is associated with a specific chromosome and can be used to identify the chromosome or to locate other genes or alleles
they are not necessarily directly involved in transcription or biologically active

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22
Q

what is the difference btw the genotype and phenotype?

A

genotype - combination of alleles a person has

phenotype - any observable trait, expressed by genotype

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23
Q

what are the 5 basic modes of inheritance?

A 
autosomal dominant
autosomal recessive
x-linked recessive
x-linked dominant
mitochondrial
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24
Q

describe autosomal dominant inheritance

A

the locus is on an autosomal chromosome (1-22) and only one mutant allele is required for expression of the phenotype

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25
describe autosomal recessive inheritance
the locus is on an autosomal chromosome and both alleles must be mutant alleles to express the phenotype
26
describe x-linked recessive
locus is on the X chromosome and both alleles must be mutant alleles to express the phenotype in females, men can have the dz with only 1 copy of the gene
27
describe x-linked dominant inheritance
the locus is on the X chromosome and only mutant allele is required for expression of the phenotype in females
28
describe mitochondrial inheritance
locus is on the mitochondrial chromosome
29
describe the pedigree pattern with an AD dz | how common are AD dz? how common are AD dz traits?
AD dzs will be in all generations; if females and males affected equally it is autosomal AD dzs are rare AD dz traits are common
30
describe pedigree pattern with AR dz | how common are AR dzs? how common are AR dz traits?
AR dzs will skip generations; if females and males affected equally it is autosomal AR dzs are rare AR dz traits are common
31
describe pedigree of mitochondrial inheritance pattern
mitochondrial inheritance cannot come from Dad, can affects male and female offspring all offspring of an affected female are affected all offspring of an affected male but unaffected female are not affected
32
what are the characteristics of X-linked dominant diseases? can they be transmitted father to son? can they be transmitted father to daughter?
X-linked dominant dzs are 2x common in females than males cannot be transmitted father to son but can be transmitted father to daughter b/c he contributes the second X males and females can be affected by X-linked dominant dzs
33
why can males get X-linked recessive dzs w/just 1 mutated allele?
males only have 1 X chromosome | have to have mom who is heterozygous for mutated X
34
what is the difference btw a missense mutation and a nonsense mutation?
missense - single base change in the gene that leads to a change in the codon that encodes for the amino acid, effect depends on which base was substituted in nonsense - base change that results in a "stop codon" which results in a short and completely inactivate protein/enzyme, severe dz is likely
35
what is the difference btw a gain-of-function and a loss-of-function mutation? is one less troublesome than the other?
loss-of-function: cause a vital or protective protein to become non-functional in the cell (loss of tumor suppressors lead to cancer) gain-of-function: a mutation occurs when either a completely new enzyme is produced in a cell, or more commonly, the enzyme is overproduced (proto-oncogenes become oncogenes)
36
why is consanguinity important in clinical medicine, even though it is rare amongst Americans?
marrying w/in 1st degree relatives - leads to increased rate of AR dzs (although 50% of marriages are consanguineous)
37
why it is called fragile X syndrome and what determines its severity?
``` MC cause of mental retardation dt #of CGG repeats # of CGG repeats determines severity ```
38
what is the epigenetic significance of X chromosome inactivation and what is a barr body? Do barr bodies form when autosomal chromosomes are imprinted (as for instance in AS and PWS)?
significance is that through inactivation of a singular X chromosome females don't make double the products conferred by genes a barr body is a female X chromosome that is rendered inactive barr body formation occurs in early divisions of cells and is called lyonization (when fertilized egg will become male or female phenotype)
39
what is the general clinical characteristic of inherited mitochondrial dzs?
neuropathies and/or myopathies
40
what is the difference btw penetrance, incomplete penetrance and variability?
penetrance - degree to which the phenotype is expressed incomplete penetrance - some genes are expressed to varying degrees; when individuals with the genotype for dz do not express it phenotypically variability - how bad the dz is when it is expressed
41
what is the recurrence risk and how is it calculated
multiple the penetrance by either 25% or 50% depending on if dz is AR or AD, respectively
42
what is pleitropy? is Marfan syndrome an example?
pleiotropy - single mutation that affects multiple organ systems YES MARFAN'S IS AN EX - AD mutation in fibrillin which causes issues in many organ systems (1/10,000)
43
what is anticipation? what does it imply will occur in each subsequent generation of a family carrying a mutation causing a dz characterized by anticipation?
pattern of inheritance in which individuals in the most recent generations of a pedigree develop a dz at an earlier age or with greater severity than do those in the earlier generations (Huntington's dz). usu due to gradual expansion of trinucleotide repeat polymorphisms w/in or near a coding region
44
how are the bands of a chromosome striped for a karyotype? what are the 3 types of bands that appear after staining?
GLEMSA staining reveals (=). (+) or variable bands
45
how many BPs have to be involved in a deletion or duplication to be grossly detectable on a karyotype without using special immunofluroescent stains? if the deletion is smaller than this number can a FISH study be used to detect it?
difference >4 Mbp can be see on karyotyping | <4 Mbp requires detection by FISH
46
what is the main cause of numerical chromosome abn?
meiotic nondisjunction dt spindle fibers behaving badly
47
proper name and characteristics for trisomy 21?
Down's syndrome MC autosomal trisomy ALL risk, decreased fertility, mental retardation, protruding large tongue, flat nose and face, eye changes, shorter fifth finger, gap btw 1st and 2nd toes, GI defects
48
proper name and characteristics for trisomy 18?
Edward's syndrome AVSD, PDA hand, foot malformations, low set ears and micrognathia (small jaw)
49
proper name and characteristics of trisomy 13?
Patau syndrome polydactyly, cleft palate, microphthalmia, microcephaly, cardiac and renal defects - both which lead to early death (dt cardiac defects)
50
why aren't there any autosomal autosomies?
incompatible with life
51
what is the karyotyping and characteristics for Kleinfelter's syndrome?
Klinefelter's syndrome - 47XXY - intersexed | hypogonadism, but ultimately normal appearing males
52
what is the karyotyping and characteristics for Turner's syndrome?
Turner's - 45X - females missing all or part of the X chromosome short stature, ovarian dysgenesis and neurocognitive problems
53
what is the karyotyping and characteristics of "Alien 3 syndrome"?
47XYY - normal but tall stature
54
through which mechanism is the Philadelphia chromosome formed? what is its significance in terms of dzs it is most associated with? know how it will read on a karyotype (what are the Philadelphia chromosome number)?
``` Philadelphia chromosome is formed by reciprocal translocation of chromosomes 9 and 22 associated with CML numbers are (t9;22) ```
55
can partial monosomies occur? what would the karyotype of Down's syndrome caused by a partial monosomy read?
yes they can occur | Down's w/partial monosomy would read as 47XX or 47XY
56
cri-du-chat results from what abn? does the patient's voice improve as they age?
caused by deletion of short arm of chromosome 5 leading to abn larynx development most develop normal larynx and voice after 2 yo
57
what is Angelman syndrome? what is its significance?
Angelman syndrome - microdeletion of maternal chromosome 15 | happy children who are ataxic and epileptic
58
what is prader-willi syndrome and what is its significance?
PWS - microdeletion in paternal chromosome 15 | children who are voraciously hungry and present as floppy babies
59
what is a ring chromosome and what is its significance? how will it read on a karyotype?
ring chromosome forms when a deletion occurs on both tips of a chromosome and the remaining chromosomal ends fuse together - often resulting in a monosomy karyotype reading - r = ring chromosome, t = translocation, i = isochromosome
60
in which dz is the translocation described in cri-du-chat and what is it associated with?
t(9;22) - associated with the Philadelphia chromosome and CML
61
what are isochromosomes and are they seen in the autosomes of live pts?
chromosome divides along the axis perpendicular to its normal axis of division resulting in 2 copies of 1 chromosome but not copy of the other autosomal isochromosomes are incompatible with life, most observed in live births will involve the X chromosome
62
in the Overkalix studies, it was found that nutritional influences and subsequent epigenetic markers could be transmitted to future generations - when it is thought that these epigenetic effects are imprinted onto the fetus' of women? when can the influence be acquired by transmission by the males? are these the only time epigenetic effects can potentially be acquired by a person and transmitted to future generations?
epigenetic effects are imprinted into women when mother is in utero (what your grandmother ate, drank, was exposed to, affects you) epigenetic effects are imprinted into males at any time b/c they continually make sperm these are not the only 2 times that epigenetic effects can potentially be acquired by a person and subsequently be passed down
63
did studies performed in mice demonstrate that CA causing heritable changes were not a result from a sequence change in DNA itself? were these mice PG or PG and in the 3rd TM when sprayed with pesticides? this suggests what about epigenetic change and when they can take place?
yes - epigenetic changes, not changes to DNA unclear what TM the mice were in suggests epigenetic changes can take place at any time
64
know the major reasons gene therapy did not work well
therapeutic DNA must remain functional and cells with it must be long lived and stable pts must undergo multiple rounds of gene therapy immune response may be severe and make it difficult to repeat gene therapy b/c of immune cell memory problems with vectors won't work with multigene disorders MC dzs are dt multiple genes and would be hard to tx w/gene therapy infecting gene via virus into humans can potentially cause a severe immune response to virus or virus could revert to causing an infection
65
what is iRNA?
interference RNA- inhibits gene expression or translation by neutralizing targeted mRNA iRNA is a process w/in living cells that moderates the activity of their genes aka co-suppression/posttranscriptional gene silencing/quelling has an important role in defending cells against parasitic and viral nucleotide sequences
66
can iRNA be passed to subsequent generations?
yes - reason iRNA is such a big deal b/c it implies DNA is not the only form of inheritance
67
what are knock-down situations? how do they work? what do they tell you about a gene? what is the most effective modality for performing knock-down studies?
expression of one or more genes is reduced through genetic modification or a reagent such as short DNA or RNA can help identify the components necessary for a particular cellular process or event such as cell division can be used to test the effect of mutated genes iRNA is the most effective modality for performing knock-down studies
68
who was George price and what was his contribution to genetics?
a population geneticist, he contributed the Price equation and 2 other things to genetics - it determined how a gene or trait changes in frequency in the population over time

Medical Genetics - BL (14 decks)

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