Structure, Function and Replication of DNA Flashcards
What does DNA contain?
genes
What are genes? (2)
units of biological information and units of inheritence
Is DNA a polymer or a monomer?
polymer
What is a polymer?
a long strand (compound made up of a long chain of identical or similar units)
what are the monomers of DNA called?
nucleotides
What is a bacteriophage?
a virus that infects bacteria and reproduces inside of it using its viral DNA to hijack the host bacterial DNA
What is phage T2?
A bacteriophage
What is the genetic material of phage T2?
DNA
Describe the method of Hershey and Chase’s 1952 experiment? (3)
1) they infected bacteria with phage T2 labelled with 32P in DNA and 35S in protein
2) they separated the phage (protein) coat and the infected bacteria
3) they isolated progeny phage
What did Hershey and Chase find in 1952? (2)
The phage contained mostly 35S label and the infected bacteria mostly 32P. When progeny (offspring) of phage was isolated, they found 30% 32P and less than 1% of 35S (basically none)
What do Hershey and Chase’s 1952 findings show?
- The DNA, not the viral protein enter the bacteria
- the DNA of the parent phages becomes part of the progeny phage
How many parts does each DNA nucleotide have?
3
What are the 3 parts of each DNA nucleotide?
- A sugar
- base
- phosphate group
Why is the sugar 2’ deoxyribose (2 prime)?
the 2nd carbon of the sugar ring doesn’t have an oxygen attached (deoxy-)
How does the deoxygenation of the 2nd carbon in the sugar affect stability?
It increases it
How many phosphates in the phosphate group of DNA?
3
what are the names of the 3 phosphate groups of DNA?
alpha (a), Beta (B) and Gamma (y)
Where is the alpha phosphate positioned on the nucleotide?
closest to the sugar
Where is the beta phosphate positioned on the nucleotide?
between the alpha and gamma phosphates
where is the gamma phosphate positioned on the nucleotide?
furthest from the sugar
How many bases are in DNA?
4
What are the four bases?
Adenine, Guanine, Cytosine and Thymine
What are the 2 types of DNA bases?
Purines and pyrimidines
Which bases are purines?
Adenine and Guanine
Which bases are pyrimidines?
cytosine and thymine
What makes a base a purine?
They’re made up of 2 carbon (2C) rings
What makes a base a pyrimidine?
They’re made up of 1 carbon (1C) ring
Which part of the base attaches to the sugar in DNA?
the nitrogen
What type of bond joins the base and the sugar in a DNA nucleotide?
A B-N-glycosidic bond
What’s the full name of the nucleotide with an A base?
2’-deoxyadenosine 5’-triphosphate (dATP)
What’s the full name of the nucleotide with a G base?
2’-deoxyguanosine 5’-triphosphate (dGTP)
What’s the full name of the nucleotide with a C base?
2’-deoxycytidine 5’-triphosphate (dCTP)
What’s the full name of the nucleotide with a T base?
2’- deoxythymidine 5’-triphosphate (dTTP)
What happens to the phosphate group of a nucleotide when DNA is polymerising?
the alpha phosphate joins to the base of the other nucleotide and the B and Y phosphates are lost
What sort of bond joins 2 nucleotides together in DNA?
phosphodiester bond
Is DNA double or single stranded?
double
what shape does the double stranded DNA make?
A helix
Who discovered the double helix structure of DNA?
Watson, Crick and Franklin
Are the ends of DNA the same or different?
different
Does DNA have directionality?
yes
can DNA be read in 1 or 2 directions?
1
How is the directionality of the 2 strands in a DNA molecule described? what does this mean?
Antiparrallel organisation
This means they go in opposite directions- 1 going 5’ -> 3’ on one and 3’ –> 5’ on the other
Is DNA a regular helix?
no
What are the 2 grooves in DNA?
Major and Minor
What’s the advantage of having a major DNA groove?
enzymes can go in and read the DNA
What bonds hold the 2 strands of DNA together?
Hydrogen bonds
What’s the hydrogen bonding between the 2 strands of DNA called?
complementary base pairing
What bases pair?
A to T
C to G
How many hydrogen bonds between A and T?
2
How many hydrogen bonds between G and C?
3
Which is a stronger bond, that between A and T or that between G and C and why?
G and C has they have more hydrogen bonds
What do you call the amount of G + C nucleotides in an organism’s DNA?
GC content
What’s the GC content of human DNA?
40.3%- medium amount
can the DNA helix exist in different forms?
yes
What are the 3 forms of DNA helix?
A, B and Z
What’s the main difference between A and B helix DNA?
A DNA has a narrow major groove but B DNA has a wide major groove
Which is the best known DNA helix?
B
In what conditions does A-DNA form?
When there;s not enough water (dehydrated conditions)
What’s the structure of Z-DNA?
It’s wound into a left handed helix
Where’s Z-DNA found?
Found with B-DNA naturally in regions of human and other organism’s DNA
Is Z-DNA biologically active?
yes
What’s a Hydrogen bond?
A weak electrostatic attraction between an electronegative atom and a hydrogen atom attached to a second electronegative atom
What’s the 3’-OH terminus?
The end of a polynucleotide that terminates with a hydroxyl group attached to the 3’-carbon of the sugar
What’s the 5’- P terminus?
The end of a polynucleotide that terminates with a mono-, di- or tri- phosphate attached to the 5’- carbon of the sugar
What are the 2 roles of the genes in a cell?
- units of biological information
- genes are units of inheritance
what’s intergenic DNA?
part of DNA which aren’t genes
what’s the purpose of intergenic DNA?
mostly unknown, however believed to be involved in DNA replication
How long is a gene?
varies greatly
what’s the unit of length of a DNA molecule?
Base Pair (number of base pairs) (BP)
How many BPs in 1 kilobase pair (kb)?
1000000 (million) BP
How many BPs in 1 megabase pair (mb)?
1000 BP (1 million)
How long are the shortest genes?
around 100 bps
How long are the longest genes?
around 2,400,00 bp
Do the longest genes contain 24000 times more information than the shortest?
no
What are genes split into (to make them discontinuous)?
introns and exons
what are exons?
parts of the gene which contain the information needed to make protein
what are introns?
information not needed to make a protein
How many introns does the average human gene have?
8
How many exons does the average human gene have?
9
What’s the mean intron length?
3365 bp
what’s the mean exon length?
145 bp
are genes directional?
yes
which direction are genes read in?
5’–> 3’
What’s the process of reading gene information called?
gene expression
by which process do genes become RNA?
transcription
By which process does RNA become a protein?
translation
what are RNA and proteins?
functional end products of gene expression (sometimes RNA is the end product)
do proteins play many roles in the cell?
yes
name 3 types of protein..
any 3 from:
- structural proteins
- motor proteins
- catalytic proteins (enzymes)
- transport proteins
- storage proteins
- protective proteins
- regulatory proteins
Give an example of a structural protein
either collagen or keratin
give an example of a motor protein
myosin or dynein
give an example of an enzyme
hexokinase or DNA polymerase
give an example of a transport protein
hemoglobin or serum albumin
give an example of a storage protein
ovalbumin or ferritin
give an example of a protective protein
immunoglobulins or thrombin
give an example of a regulatory protein
insulin or somatostatin or somatotrophin
what’s the structure of collagen?
long and thin
what does hemoglobin do?
transports O2 in RBCs
what does insulin do?
regulates sugar levels
do RNAs that do not translate play important roles in cells?
yes