Structure/function Flashcards
Function of proteins-trypsin
Enzyme secreted from pancreas into small intestine and digests food
Functions of proteins- hemoglobin
Main protein found in red blood cells that binds to oxygen and helps blood carry oxygen from lungs to tissues (transport services)
Functions of proteins-insulin
Enzyme secreted from pancreas into blood stream after a meal when blood glucose levels are high. It stimulates cells to convert excess glucose into energy storage molecules such as glycogen
Function of proteins-immunoglobulin
(Antibodies) proteins which bind to surfaces of foreign objects such as viruses or bacteria, identifying those objects as targets for attack by your immune system
Protein of functions- myosin
Major protein involved in muscle contraction.
Function of proteins- keratin
Forms fibers in hair
Functions of proteins opsin
Optical vision proteins binds to pigment named retinal which is derived from vitamin A and when retinal pigment struck by photon, it changes its own shape and the shape of the protein opsin which binds to it, triggering a nerve impulse to the vision processing portion of brain
Amino acid structure and exception
NH2-CH-COOH-side chain
Exception: side chain bonded to amine and central carbon
20 amino acids, proteins constructed by linking amino acids into long chains
Smallest amino acid
Glycine, it’s side chain is H
Condensation reaction
Water is produced
Carboxyl group of one AA joins with the amino group of another AA to form a substituted amide group
Counting starts from the amine group
Hetereopolymers
Composed of different amino acids
Same amino acids (starch) homopolymer
Proteins may contain up to several hundred amino acids which occur in a specific sequence dictated by information encoded in genes of organism producing the protein
Protein folding
Capable of folding into 3D structures and different amino acids are responsible for generating the different shapes
Uses of nucleic acids
Storage of genetic info and storage of chemical energy
RNA/DNA formation and process
DNA is a type of polymer which stores genetic info in the form of a double helix.
Process of using DNA info to synthesize proteins included an intermediate step in which a single polymeric strand of RNA, called mRNA is produced. The terms RNA/DNA are composed of monomer units called nucleotides.
ATP Process used
ATP
Adenosine triphosphate
Small monomer called a nucleotide which releases a lot of energy when one of the three phosphate groups is cleaved away.
Structures of nucleotides in DNA/RNA
Nucleic acid polymers are constructed from nucleotides.
RNA structure
5 carbon sugar ribose, a phosphate group attached to 5’ Carbon of sugar and a base attached to the 1’ Carbon.
OH attached to 2’ C
Ribonucleotides joined together to make RNA or ribonucleic acid
DNA structure
Deoxyribonucleotides have 5 carbon sugar ribose with phosphate group attached to 5’ carbon and base attached to 1’ carbon.
An oxygen is missing at the 2’ position
Polynucleotide chain
AT(U), GC
A (large base) always pairs with T through two hydrogen bonds, the third one is too far. The NH is a hydrogen bond donor on Thymine and N with lone pair on adenine is hydrogen bond acceptor.
Guanine always pairs with cytosine through three hydrogen bonds.
DNA function
Provide mechanism for duplicating genetic info when a cell divides so a copy can be incorporated into each of the resultant daughter cells.
During replication the two strands of original DNA separate and two new strands are synthesized to complement each of the old strands. The structural aspects of base pairing provide the basis for the replication function
DNA mRNA transcription
During transcription, Double stranded DNA partially unwinds to expose side chains of DNA strand. The lower DNA strand will serve as a template for constructing a complementary mRNA. (For a brief time, the DNA and mRNA will be a double helix) the mRNA separates from the DNA and regenerates the old DNA. The mRNA will have same sequence as old DNA but with a U and ribonucleotides.
Translation
mRNA binds to ribosome where the info in mRNA is used to make a protein .
Each group of three nucleotides on mRNA codes for one amino acid in the protein bring synthesized by the ribosome.
tRNA attach to amino acids and bind to the mRNA in the ribosome during translation of the mRNA sequence.
Genetic code: correspondence between nucleic acid triplet and its corresponding amino acid
Large delta G ATP
ATP is primary storage energy molecule in cells. The molecule can undergo an extremely favorable reaction characterized by a large negative change in Gibbs free energy.
Cleavage of ATP into ADP extremely favorable. Energy used (muscle contraction)
ATP: 3 negatively charged phosphate groups held together at end of molecule. (Repulsion) when bond to the phosphate group at the end of the molecule is broken, that phosphate is repealed away from the remainder of the molecule. This separation is favorable.
equiibrium lies in the direction of cleaved products
Monosaccharides-Aldoses
Monomeric units of carbohydrates
Aldoses: 1st upper carbon is an aldehyde group
Carbonyl (C=O) at the top of molecule whereas other carbons attached to OH groups