Skildum Week 2 Flashcards
What initial substrates can be used to make acetyl CoA?
Glucose - Glycolysis
Fatty Acids - Beta Oxidation
Amino Acids - release nitrogen
What products are formed from the TCA cycle?
3 NADH
2 FAD(2H)
1 GTP
Which cells are associated with:
Glut 1 and 3
Glut 2
Glut 4
Glut 1 and 3 = most cells (high affinity)
Glut 2 = liver, pancreas (low affinity)
Glut 4 = insulin induced (medium affinity)
How does glucose move during the fasted state?
Gluconeogenesis and glucogenolysis in liver cells release glucose that follows concentration gradient out Glut 2 and into Glut1, 3 to myocytes.
What is produced in aerobic and anaerobic glycolysis?
aerobic: net 2 ATP 2 NADH and 2 pyruvate
anaerobic: Net 2 ATP, and lactate to regenerate NAD+
Which enzyme catalyzes the first step of glycolysis:
glucose + ATP –> glucose 6-phosphate + ADP
hexokinase (most tissues)
glucokinase (in liver)- glucokinase is NOT product inhibited so liver can use glucose as substrate for anabolic reactions when glucose is not needed for energy
Which enzyme catalyzes key regulatory step in glycolysis:
fructose 6-P + ATP –> fructose 1,6 BP + ADP
phosphofrucktokinase -1 (PFK-1)
Irreversible reaction
Which enzyme in glycolysis
PEP + ADP –> pyruvate + ATP
pyruvate kinase
substrate level phosphorylation makes ATP
What enzyme converts
pyruvate + NADH –> lactate + NAD+
lactate dehydrogenase
-recycles NAD+ so glycolysis can continue
What enzyme converts
pyruvate to acetyl CoA to enter the TCA cycle?
pyruvate dehydrogenase complex
What is the Cori cycle?
Lactate from RBCs enter liver and is converted to glucose by gluconeogenesis.
What is the function of the malate- aspartate shuttle?
In cytosol 2 NADH + oxaloacetate –> malate + 2 NAD+
Malate enters mitochondria, in mito:
malate + NAD+ –> oxaloacetate + NADH
Allows NADH to enter the electron transport chain.
Oxaloacetate + amine from glutamate –> aspartate and alpha-ketoglutarate
Aspartate can leave mitochondria (reverted to oxaloacetate again)
Which enzyme in glycolysis produces NADH in the cytosol of heart, liver, and kidney cells?
glyceraldehyde 3-phosphate dehydrogenase
NADH must be shuttled to mitochondria by malate-aspartate shuttle
How does reduced NADH equivalents enter electron transport chain in skeletal muscle and brain?
glycerol 3-phosphate shuttle.
Dihydroxyacetone-P + NADH –> glycerol 3 phosphate + NAD+
Glycerol 3 phosphate enters inner mito
Glycerol 3 phosphate + FAD –> dihydroxyacetone + FAD2H
the FAD2H enters electron transport chain
Can NADH cross the inner mitochondrial membrane?
No, so when it is made in cytosol (glycolysis) must use glycerol 3-phosphate shuttle)
When glycogenolysis is induced, what is pathway for glucose to leave liver cells?
glycogen –> glucose 1-P –> glucose 6-P –> glucose (then in other cells first step is hexokinase adding phosphate back)
What allosteric regulation affects phosphofructokinase-1? (Rate limiting step in glycolysis)
AMP = allosteric activator
Fructose 1,6-bisphosphate = allosteric activator
ATP = inhibitor
Citrate = inhibitor
What enzyme
2ADP –> AMP + ATP
adenylate kinase
What enzyme
fructose 6-phosphate + ATP –> fructose 2,6 BP + ADP
Phosphofruktokinase 2 (PFK2) shunt off glycolysis
How is the PFK-2 kinase domain activated?
Activated by AMP and glucagon to make fructose 2,6BP (activates PFK1)
-also activated by phosphorylation by PKA and AMP-K
How is pyruvate kinase (PK) regulated?
- by concentration substrates and products
- activated by fructose 1,6-BP
- inhibited by PKA
Why would increasing PK-M2 (embryonic pyruvate kinase) be favored by cancer cells?
PK-M2 binds phosphorylated tyrosines which displaces allosteric activator (fructose 1,6BP) decreasing enzyme activity
-increased rate of glycolysis and block PK = glycolysis intermediates will spill out
How does 2,3-BPG affect red blood cells?
When bound it promotes T state of hemoglobin, so promotes releasing bound oxygen to tissues
Why would body increase 2,3-BPG?
Response to lack of oxygen
-smokers, high altitude
Activated when electron transport chain is stopped
What is lactic acidosis?
When normal ATP oxidation is blocked, glycolysis provides all ATP. To continue, must regenerate NAD+ by making lactate.
-lactate and H+ in blood decreases blood pH
What is ischemia?
loss of blood perfusion and oxygen delivery to tissue
What happens when NADH/ NAD+ ratio increases?
Product inhibition on pyruvate dehydrogenase
Substrates for lactate dehydrogenase (pyruvate and NADH) favors lactate production
What happens when AMP/ATP ratio increases?
-Cell needs more energy to be made
AMP allosterically activates PFK-1
AMP activates AMP-K which activates PFK-2 (which will further activate PFK-1)
Increased rate of glycolysis
What substrates are used for energy when pyruvate dehydrogenase (PDH) is on and off?
On- uses carbohydrates
Off- uses fatty acids for energy
Which form of stored energy is most prevalent in the body?
triglycerides (fat) > protein > glycogen> glucose
Do saturated or unsaturated fats have a lower melting point?
Unsaturated fats since the double bonds lower the melting point (harder to stack)
Which enzyme releases fatty acids from storage?
hormone sensitive lipase
How is hormone sensitive lipase regulated?
insulin - blocks activity
glucagon, epinephrine, and norepinephrine- activate the enzyme
What transports fatty acids from adipocytes in the blood?
serum albumin
What enzyme activates fatty acids in cell cytosol? (these enzymes are specific to FA length)
fatty acyl CoA sythetase adds a CoA “handle” to the fatty acid
Reaction requires 2 ATP
Where does beta oxidation of fatty acids take place?
In the mitochondrial matrix
How does fatty acyl CoA cross the inner mitochondrial membrane?
the carnitine shuttle
carnitine: palmitoyl transferase 1 (CPT1)
carnitine + acyl CoA –> fatty acyl carnitine + CoASH
Passes through carnitine acylcarnitine translocase into inner mito matrix
Carnitine palmitoyl transferase 2 (CPT2):
CoA + fatty acylcarnitine –> fatty acyl CoA + carnitine
What is CPT 2 deficiency and how is it diagnosed?
inherited autosomal recessive disorder
Diagnosed by increased fatty acyl carnitine (can’t be reverted to carnitine and fatty acyl CoA)
What are the 4 main steps in fatty acid beta oxidation?
Oxidation
Hydration
Oxidation
Carbon-Carbon bond cleavage
What is medium chain acyl CoA dehydrogenase deficiency (MCAD)?
acyl CoA dehydrogenase (first oxidation in FA beta oxidation) doesn’t work.
Reye syndrome in infants (fasting hypoketotic anemia,
Diagnosed by high medium chain acyl CoA
What is Jamaican vomiting sickness and what causes it?
- hypoglycin is the poison that inhibits acyl CoA dehydrogenase (like MCAD)
- from eating unripe ackee fruit
What is the specificity of enoyl CoA hydratase ? (hydration reaction in beta FA oxidation)
only accepts substrates with trans double bonds
-if cis, must convert to trans using a reductase that consumes NADPH
How are odd chain length fatty acids oxidized?
Thiolase (last step, bond cleavage) splits last 5 into acetyl coA and propionyl CoA.
- Propionyl CoA to methylmalonyl CoA (by enzyme propionyl CoA carboxylase)
- methylmalonyl mutase converts to succinyl CoA which enters TCA cycle in the middle
How are very long chain (>22Cs) oxidized in FA beta oxidation?
Degraded in peroxisomes, but first step donates electrons to molecular oxygen (and makes H2O2) not FAD
-at 4-6 Cs, go to mitochondria by carnitine based transport
How are branched chain fatty acids broken down? (found in plants)
In peroxisomes, make H2O2
-propionyl CoA: enzymes carboxylase, mutase, then succinyl CoA enters TCA cycle
Where does omega- oxidation of fatty acids occur?
in the ER by cytochrome P450. Broken down to medium chain length dicarobxyls which can be used by other tissues or excreted in urine
What in body can ONLY use glucose for energy?
red blood cells (they have no mitochondria)
What can the brain use for energy?
glucose or ketone bodies (cannot use fatty acids)
How is ketone body synthesis regulated?
with increase FA beta oxidation in liver, abundant NADH and acetyl CoA which drives TCA cycle backwards (oxaloacetate goes back to malate)
- Malate leaves for gluconeogenesis
- reduction in oxaloacetate diverts acetyl CoA into ketone body synthesis (not TCA cycle)
What is ketoacidosis?
depression of blood pH by excessive ketone body production
Caused by starvation or diabetes
What substance in inner mitochondrial membrane makes it impermeable?
cardiolipin (aggregation of 3 phospholipids)
What is special about mitochondrial DNA?
- circular, reproduces by fission
- only 13 genes, but has transcriptional machinery
- hyper mutable
- more naked (no histones
- heterogeneous (multiple copies in each mito)
what happens to mito proteins in MERRF (myoclonic epilepsy, muscle tissue has ragged red fibers, progressive dementia)
point mutation in mitoDNA makes tRNA for lysine non functional
-mitochondrial proteins with lysine will be truncated
What are the 2 general rules in mitochondrial dysfunction?
- diseases tend to be heterogeneous in severity
- diseases tend to get progressively worse with age
Where are PDH and TCA cycle located?
mitochondrial matrix
Which subunits and associated cofactors form pyruvate dehydrogenase (PDH)?
E1- pyruvate decarboxylase (TPP)
E2- transacetylase (lipoate)
E3- Dihidrolipoyl dehydrogenase (FAD, NAD+)
PDH is regulated by PDH kinase and PDH phosphatase. What substrates activate and inhibit each?
PDH is active when dephosphorylated
PDH Kinase: activated by acetyl CoA and NADH
-inactivated by pyruvate and ADP
PDH phosphatase: activated by Calcium
So PDH is turned on by pyruvate, ADP, and Calcium
In what state (fed or fasted) is PDH turned on?
PDH links glycolysis with TCA cycle
-want it on when cell needs energy (high ADP)
What is the key rate limiting step in the TCA cycle?
Isocitrate –> alpha ketoglutarate
-enzyme: isocitrate dehydrogenase
Produces NADH and CO2
Large negative delta G