Signalling and mechanisms in growth and division

Question 1

What transcription factor is stimulated by growth factor signalling and is vital to starting the cell cycle?

Answer 1

c-Myc

Question 2

Describe what happens to tyrosine kinase receptors when growth factors bind to them.

Answer 2

Tyrosine kinase receptors are usually present on membranes as inactive monomers

Most growth factors are dimers, so when they bind they bring tyrosine kinase receptors close together

This allows the tyrosine kinase receptors to cross-phosphorylate each other (using the gamma phosphate from ATP to phosphorylate tyrosine residues in proteins)

The phosphorylated domains on the tyrosine kinase receptors act as docking sites for adaptor proteins

Question 3

Give an example of an anti-cancer drug that targets tyrosine kinase receptors.

Answer 3

Herceptin – inhibits the Her2 tyrosine kinase receptor (important in many tumours e.g. breast)

Question 4

Name an important adaptor protein.

Answer 4

Grb2

It is modular
It has an SH2 domain, which binds to the docking sites (phosphorylated tyrosine residues on the tyrosine kinase receptors)
It has two SH3 domains, which bind to proline-rich regions of proteins

Question 5

Describe how receptor protein tyrosine kinases can signal to Ras.

Answer 5

Grb2 is bound to an exchange factor called Sos
When the tyrosine kinase receptors become active and the dockingsites become available, Grb2 binds to the docking site and it is also attached to Sos
This brings Sos close enough to the cell membrane and Ras, to allow it to exchange the GDP on Ras for GTP

GTP bound Ras is active

Question 6

What must the Ras protein be bound to for it to work?

Answer 6

It must be bound to the plasma membrane

NOTE: interference with the membrane binding of Ras can make a good anti-cancer drug

Question 7

How is Ras turned off?

Answer 7

Ras has intrinsic GTP hydrolysis capability

This GTPase activity is stimulated by GTPase-activating proteins (GAPs)

Question 8

Broadly speaking, how might Ras signalling be different in cancer?

Answer 8

Ras could be permanently switched on (in the GTP bound form), thus it constantly signals cell division

Question 9

Describe two mutations that lead to an increase in the amount of active Ras.

Answer 9

V12Ras – glycine is replaced by valine, which means that a simple hydrogen side chain is replaced by a hydrophobic sidechain. This hydrophobic side chain doesn’t allow GAPs to bind to Ras, thus preventing inactivation of Ras.

L61Ras – glutamine is replaced by leucine (in position 61), which means that an amine side chain is replaced by a hydrophobic side chain. This inhibits the GTPase activity of Ras so Ras remains in the active, GTP bound form.

Question 10

What cascade does Ras activate?

Answer 10

ERK cascade (Extracellular signal-regulated kinase cascade)

Question 11

What is the family that this cascade belongs to called?

Answer 11

MAPK cascade (Mitogen-activated protein kinase cascade)

Question 12

What are the three kinases involved in the ERK cascade?

Answer 12

Raf
MEK
ERK

Question 13

What does the last kinase in the cascade phosphorylate?

Answer 13

It phosphorylates gene regulatory proteins (transcription factors), which go on to regulate the expression of genes involved in the cell cycle
They also phosphorylate other proteins and change their activity

Question 14

What important gene is turned on by the kinase cascade?

Answer 14

c-Myc

Question 15

What type of kinase are cyclin-dependent kinases (Cdks)?

Answer 15

Serine-threonine kinases

Question 16

What conditions do Cdks require to become activated?

Answer 16

Binding to cyclin
Phosphorylation (activating phosphorylation and removal of inhibitory phosphorylation)
(+ degradation of Cdk inhibitors)

Question 17

What does the mitosis-promoting factor (MPF) consist of?

Answer 17

Cdk1 + cyclin B

Question 18

What are the requirements, in terms of phosphorylation, for MPF to become active?

Answer 18

Activating phosphorylation by CAK (Cdk activating kinase)

Removal of the inhibitory phosphorylation (that was placed by Wee1) by Cdc25

Question 19

What activates MPF at the end of interphase?

Answer 19

Removal of the inhibitory phosphorylation by Cdc25

Question 20

Describe the positive feedback loop that is formed by MPF activation.

Answer 20

Removal of the inhibitory phosphorylation by Cdc25 produces active MPF, which then phosphorylates Cdc25 and increases its activity meaning that more MPF can be activated

Question 21

How does MPF put mitosis on hold before progressing to the next stage?

Answer 21

At the end of metaphase, it phosphorylates a number of key proteins and inhibits their action (thus putting mitosis on hold) until it is signalled to proceed.

Then the cyclin B is degraded, Cdk is inactivated and the substrates become dephosphorylated and hence become active.

Question 22

Which Cdk/cyclin is required for G1/S phase?

Answer 22

Cdk2-cyclin E

Question 23

Which Cdk/cyclin is required for S phase?

Answer 23

Cdk2-cyclin A

Question 24

How can the same Cdk be used for two different stages?

Answer 24

Cyclin binding alters the substrate specificity of Cdk

Also, different substrates are available at different stages of the cell cycle

Question 25

What is one of the most important transcription targets of c-Myc?

Answer 25

Cyclin D

Question 26

What is the first Cdk/cyclin complex that is formed when a cell goes from G0 to G1?

Answer 26

Cdk4/6-cyclin D

Question 27

This Cdk/cyclin complex then stimulates the expression of the next cyclin in the cell cycle. What properties does this system give to the cell cycle?

Answer 27

This gives the cell cycle direction and timing (because the Cdk-cyclin complexes must reach a certain concentration before they can triggerthe next stage of the cycle)

Question 28

Give an example of a phosphorylation target of MPF that allows the cell cycle to progress.

Answer 28

Phosphorylation of nuclear lamins allows breakdown of the nuclear envelope

Question 29

What is start kinase and what is one of its most important targets?

Answer 29

Start kinase = Cdk2-cyclin E

Retinoblastoma

Question 30

Describe the role of retinoblastoma in the quiescent G0 state.

Answer 30

Retinoblastoma is unphosphorylated and binds to and sequesters a group of transcription factors called E2F

Question 31

What effect does Cdk4/6-cyclin D have on retinoblastoma?

Answer 31

It multiply phosphorylates retinoblastoma – as it becomes phosphorylated it loses its affinity for E2F and releases E2F
This means that the E2F transcription factors can regulate gene expression and promote progression of the cell cycle

Question 32

What is one of the main targets of E2F?

Answer 32

Cyclin E (the next cyclin in the cell cycle)

Question 33

What type of gene is retinoblastoma?

Answer 33

Tumour suppressor gene (it acts a break on the cell cycle)

Question 34

State some important genes that are regulated by E2F.

Answer 34

Proto-oncogenes – c-Myc, n-Myc
Cell cycle – E2F-1,2,3, pRb, cyclin A, cyclin E, CDK4, CDK2
DNA synthesis – thymidine kinase, thymidine synthetase, dihydrofolate reductase, DNA polymerase

Question 35

The initial release of E2F allows transcription of cyclin E leading to the formation of Cdk2-cyclin E. What effect does this complex have on retinoblastoma?

Answer 35

Cdk2-cyclin E further phosphorylates retinoblastoma so more E2F is released and the concentration of E2F increases

Question 36

What is the significance of the increasing concentration of E2F?

Answer 36

This means that E2F can now bind to targets with a lower affinity (e.g. cyclin A gene promoter isn’t activated until the E2F concentration is high enough)

Question 37

What are the two families of Cdk inhibitors?

Answer 37

INK4

CIP/KIP

Question 38

During which phase do each of the families act and how do they inhibit Cdk?

Answer 38

INK4 – G1 phase – it displaces cyclin D from the Cdk4/6-cyclin D complex
CIP/KIP – S phase – it binds to the Cdk/cyclin complexes and inhibits them
NOTE: these inhibitors need to be degraded at various stages for the cell cycle to progress

Question 39

State some common and important oncogenes.

Answer 39

EGFR/HER2 – mutationally activated or over-expressed in many breast cancers
Ras – mutationally activated in many cancers
Cyclin D1 – overexpressed in 50% of breast cancers
B-Raf – mutationally activated in melanomas
c-Myc – overexpressed in many tumours

Question 40

State some important tumour suppressor genes.

Answer 40

Rb – inactivated in many cancers

p27KIP1–under-expression correlates with poor prognosis in many malignancies