Sex Determination Flashcards

1
Q

What are the biological advantages of sexual reproduction?

A

It speeds evolution and contributes to survival of species by increasing genetic variabilityIt also protects and preserves species

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2
Q

What is X chromosomal inactivation, and what are the implications?

A

Cells from normal females inactivate one X chromosome.All diploid somatic cells in both males and females have a single active X chromosome regardless of the total number of X and Y chromosomes present.X inactivation is normally random so that females are mosaic for expression of their X chromosomes. On average, 50% of cells in any given tissue will express the paternally inherited X and 50% will express the maternally inherited X.

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3
Q

What is the mechanism for X chromosome inactivation?

A

X inactivation results from DNA methylation and modifications of histone proteins that depend on expression of the XIST gene on the inactive X. The XIST gene encodes noncoding RNA, which is expressed in cell nuclei where it associates in cis (i.e. with the inactive X) as part of an XIST RNA/Barr body complex (See Figure 6-13 in Thompson and Thompson).

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4
Q

What are the two cases when X inactivation is not random?

A

Nonrandom X inactivation occurs when an X chromosome is abnormal or there is an X; autosome translocation.Cytogenetic analysis looking for an X; autosomal translocation is indicated when a female presents with an X-linked recessive phenotype.In the absence of cytogenetic abnormalities, nonrandom X inactivation can be diagnosed by analyzing the methylation pattern of highly polymorphic X chromosomal loci (e.g. gene for the androgen receptor, AR, Xq11-12).Selection will favor normal X’s, and will preferentially deactivate abnormal X’s.

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5
Q

How is sexual differentiation genetically regulated?

A
  1. Genetic sex (XX, XY)2. Gonadal sex: Is SRY expressed?SRY is the principal determinant of testicular differentiation. In the absence of SRY expression, undifferentiated gonadal tissue develops into ovaries.
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6
Q

What 2 stages do germ cells go through with regards to gonads?

A

Sexually independent pregonadal stage, during which they migrate from yolk sac to developing gonads.Gonadal dependent stage: when they mature.

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7
Q

How is male/female genital sex regulated?

A

Specific hormones and growth factors from differentiated testes determine male gonads.In the absence of these factors or receptors, female genitalia develop (internal and external).

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8
Q

What 2 non-germ cells are within normal testes?What do they produce?

A

Sertolli: Mullerian Inhibitory Factor (MIF)Leydig cells: Testosterone

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9
Q

What does MIF do?

A

Prevents formation of mullerian (paramesonephric) duct derivatives (fallopian tubes, uterus, upper vagina).

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10
Q

What does testosterone do?

A

Stimulates the development of Wolffian ducts (mesonephric) into the epididymal ducts and ductus deferens.Also stimulates descent of testes into the scrotum.

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11
Q

What are the clinical characteristics of 45X?

A

45 X occurs most frequently (possibly as frequently as 50% of conceptions, but in about 1 in 2000 to 5000 liveborns) and produces Turner syndrome.In this condition early female gonadal and genital development are normal. However, gonadal dysgenesis (involution and degeneration of developing ovaries through apoptotic mechanisms) develops during late fetal life.Short stature, perceptual disorders and anatomic maldevelopment of the heart (coarctation of the aorta) and kidneys (fused) are also associated with this condition.

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12
Q

What are the clinical characteristics of 47 XXY?

A

47 XXY individuals develop as anatomic males but also have gonadal dysgenesis. This results in infertility due to failed maturation of spermatogonia and low levels of testosterone production. Tall stature (eunichoid appearance), gynecomastea and increased impulsive behavior are also associated with this condition (Klinefelter syndrome). The frequency is about 1 in 1000.

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13
Q

What are the clinical characteristics of 47XYY?

A

47 XYY individuals are normal males that are generally taller than expected in their families. The frequency is approximately 1 in 900-1000 in the general population but higher among men in penal institutions. The reason(s) for these differences in distribution are incompletely understood.

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14
Q

Describe the clinical approach to disorders of sexual differentiation.

A

Determine the karyotype, guides both surgical and psychosocial management and genetic counselling.

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15
Q

HOMEWORK: Sex in turtles is determined by the incubation temperature of their eggs. How does this happen?

A

Above a pivotal temperature, the turtle becomes a female. Below, it becomes a male. This is due to synergy between particular hormones and temperature.

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16
Q

HOMEWORK: Haploinsufficiency for the SOX9 gene results in what skeletal dysplasia in which 75% of affected individuals with an XY karyotype develop ovaries?

A

Campomelic dysplasia: newborns have congenital bowing and angulation of long bones.

17
Q

HOMEWORK: Describe a condition in which SRY is absent and 46, XX individuals develop testicular tissue and male external genitalia. How does this occur?

A

SRY has been translocated to an X chromosome?

18
Q

What proteins does human genomic DNA combine with?What do they do?How are they arranged?

A

Histones, nonhistone proteinsHistones: involved in proper packaging in chromatin fiberNonhistone proteins: less understood. Solenoids are attached to them.Double helix wraps around histone octamers to form nucleosome fiber, which is arranged in a secondary helical chromatin structure (solenoid).

19
Q

What genomes do human cells contain?

A

Nuclear and mitochondrial

20
Q

What are the features of the mitochondrial genome?

A

Inheritance is exclusively maternal.16kB genome, few dozen genesUses slightly different triplet code.Can lead to genetic disease if mutated.Vast majority of proteins that function in mitochondria are encoded by nuclear genes.

21
Q

What are the fundamental principles regarding the evolution and organization of the human genome?

A

The human genome is a record of evolutionary history. As such, it reflects results of different selection pressures, and contains genes and genomic features that have been retained.

22
Q

What can genome variation cause?

A

Evolutionary changes and genetic disease

23
Q

Is the human genome static or dynamic?Why?

A

Dynamic.30 new mutations occur in each individual, recombination shuffles regions

24
Q

How frequently might one find an identical SNP between two individuals?

A

1/1000 base pairs between two randomly chosen human genomes.

25
Q

What are the types of variations that occur between genomes?

A

Insertion/deletion polymorphisms: Minisatellites (10-100 bps), microsatellites (2-4 nucleotide repeats)Single Nucleotide PolymorphismsCopy number variations (segments of genome 200bp-2Mb)

26
Q

What are examples of gene-rich and gene-poor chromosomes?What does it mean for DNA to be stable or unstable, GC rich, AT rich, euchromatic, or heterochromatic?

A

Gene rich: Chromosome 19Gene poor: 13,18,21Unstable: dynamic regionsStable: conserved regionsGC rich: 38% of the genomeAT rich: 54%Euchromatic: more relaxedHeterochromatic: more condensed

27
Q

Is the genome totally sequenced?

A

No, many gaps remain in euchromatic regions. Plus, repeat regions are hard to sequence.

28
Q

What categories can DNA sequences be assigned to?What are the frequencies of each class?

A

Protein coding (1.5%)Genes (20-25%)Single copy sequences (50%)Repetitive DNA (40-50%)

29
Q

What are the classes of repetitive DNA?

A

Tandem repeats (satellite): used for cytogenetic bandingDispersed repetitive elements: Alu (SINE = Short Interspersed repetitive Elements) and L1 (LINE = Long Interspersed repetitive Elements) families. Retrotransposition may cause insertional inactivation of genes.SINE: 300bp related members, 500k copiesLINE: 6kb related members, 100k copies

30
Q

How many genes are there?What are the different types of genes?

A

25,000 to 30,000Protein coding, RNA encoding, pseudogenes (intron containing or intronless)

31
Q

What is a gene family and how do they arise?

A

Gene family: composed of genes with sequence similarity but distinct functions.They arise through gene duplication, then mutation.

32
Q

What is the advantage of gene duplication?

A

When a gene duplicates, it frees up a copy to mutate while the other copy maintains a critical function.

33
Q

What is the missing heritability problem?

A

Genetic associations have not been found for a large part of expected genomic contribution. Bummer.