Selective Toxicity Flashcards
Antibiotic
A substance produced by a microorganism that in low concentrations inhibits the growth of another microbe.
Majority are based on naturally occurring compounds (i.e. penicillin).
May be semi-synthetic or synthetic.
Types of bacteria
Gram negative (cocci/spherical or bacilli/rod-shaped):
- Outer membrane
- Periplasmic space
- Peptidoglycan layer
- Cell membrane
- Stains pink/red
Gram positive (cocci or bacilli):
- No outer membrane
- Thicker layer of peptidoglycan
- Cell membrane
- Stains purple
Antimicrobial susceptibility testing (AST)
Determines which antibiotics a pathogen is susceptible to (i.e. which antibiotic will inhibit growth)
Used to select appropriate antibiotic treatment
Breakpoint
Concentration of antibiotic which defines if a species of bacteria is susceptible or resistant to the antibiotic.
Examples of gram negative bacteria
Cocci:
- Neisseria
Bacilli:
- Enterobacteriaceae family
- Escherichia coli
- Klebsiella pneumoniae
- Haemophilus
- Salmonella
Examples of gram positive bacteria
Cocci:
- Staphylococcus
- Staphylococcus aureas (methicilin-sensitive
(MSSA) and methicilin-resistant (MRSA))
- Coagulase negative (CoNS)
- Streptococcus
Bacilli:
- Listeria
- Clostridium
- Cornyebacterium
- Bacillus
Bacteriostatic agent and examples
Reversibly inhibits growth
Examples:
- Macrolides
- Sulfonamides
- Tetracyclines
- Oxazolidanones
Bactericidal agent and examples
Causes irreversible lethal action on bacteria
Examples:
- Beta-lactams
- Aminoglycosides
- Glycopeptides
- Quinalones
- Rifamycins
Minimum inhibitory concentration (MIC)
The lowest visible dilution that inhibits growth of bacteria (first solution that appears clear).
MIC - gradient disk test
- Culture taken from patient (e.g. blood, urine, sputum)
- Culture with the greatest zone of inhibition means that drug has the greatest efficacy
- Culture with no zone of inhibition is resistant to the drug
Bacterial targets and examples
- Cell wall
- Beta-lactams
- Glycopeptides
- Alteration of cell membranes
- Polymyxins
- Lipopeptides
- Ribosomes (protein synthesis)
- Aminoglycosides
- Tetracyclines
- Macrolides
- Oxazolidinones
- Biochemical pathways (interference)
- Sulfonamides
- RNA synthesis
- Rifamycins
- DNA synthesis
- Fluoroquinolones
Targets of antibacterial agents and examples
- Inhibit cell wall production
- Penicillin binding proteins
- Cephalosporins
- Glycopeptides
- Inhibit protein synthesis
- Bind 30s or 50s ribosomal units
- Chloramphenicol, tetracyline, aminoglycosides
- Block biosynthetic pathways
- Interfere with folate metabolism sulphonamides
- Disrupt bacterial membranes
- Polymyxins
What is an ideal antibiotic? (10)
- Appropriate spectrum of activity for the clinical setting (i.e. gram positive, gram negative)
- No toxicity to the host, well tolerated
- Low tendency for development of resistance
- Doesn’t induce hypersensitivities in the host
- Rapid and extensive tissue distribution (quicker response)
- Relatively long half-life
- Free of interactions with other drugs
- Convenient for administration
- Relatively cheap
- Chemically stable
Cell wall biosynthesis
- Building block partially constructed in cytoplasm
- Transported across cell membrane and completed
- Bacitracin blocks carrier lipid from going back
- Constructed from 2 sugars (NAM, NAG) and peptide chain
- Linked to growing cell wall by enzyme (transglycosidation, stopped by vancomycin)
- Final crosslinking reaction catalysed by transpeptidase enzymes (stopped by beta-lactams)
Beta-lactam antibiotics examples
- Penicillins
- Cephalosporins
- Carbapenems
- Monobactams
- Clavulanic acid
Mechanism of action for penicillin to transpeptidase (3)
- Penicillin covalently links to enzyme’s active site via ester link
- Penicillin acts as steric shield to prevent access of substrate/water to active site
- Results in irreversible inhibition
Disadvantages of beta-lactams
- Generally well tolerated
- Penicillins associated with hypersensitivity which can limit use
- High doses of carbapenems associated with risk of seizures
How do glycopeptides inhibit cell wall synthesis in bacteria? Give examples of glycopeptides
- Bind directly to D-Ala-D-Ala terminus of peptidoglycan pentapeptide chain
- Prevents cross-linking by transpeptidase
- Only active against gram-positive bacteria (too large to penetrate gram-negative bacteria’s outer membrane
- Examples: Vancomycin and teicoplanin
Therapeutic drug monitoring (TDM)
Minimises toxicity without compromising efficacy for some drugs with a narrow therapeutic index
How do polymyxins target the outer bacterial cell membrane? (4)
- Interact with phosholipids in cell membrane
- Specifically binds to lipopolysaccharides (LPS) in outer membrane of gram negative bacteria
- Targets gram negative only
- Only used as a last resort and can cause significant renal toxicity
What are the bacterial targets of antibiotics for protein synthesis? (3)
- Chloramphenicol, macrolides and oxazolidanones, pleuromutilin: Bind to 50S subunit
- Aminoglycosides: Bind to 30S subunit, induce misreading of genetic code, interferes with initiation complex
- Tetracyclines: Bind to 30S subunit, block binding of tRNAs
Chloramphenicol targets (3)
- Prevents peptide bond formation between new amino acid and peptide chain
- Bacteriostatic
- Broad spectrum, mainly used to treat eye infections and sometimes ear infections
What are the disadvantages of using chloramphenicol? (3)
- Rare but fatal toxic effect in newborns (Grey-baby syndrome)
- Caused by liver’s inability to glucoronidate the drug effectively in baby whose metabolising enzymes are developing
- Prevented by correct dosing and therapeutic drug monitoring (not recommended for newborns < 2 weeks)
Macrolide targets and examples of macrolides (3)
- Block polypeptide exit tunnel, thus stopping polypeptide chain from growing
- Erythromycin, clarithromycin, azithromycin
- Narrow spectrum and mostly bacteriostatic
Oxazolidinone targets and an example (4)
- Inhibit formation of initiation complex (larger ribosomal complex)
- E.g. Linezolid
- Gram positive activity - active against MRSA and VRE (gram positive bacteria)
- Tolerability issues with bone marrow suppression
Pleuromutilin targets and examples (4)
- Novel drug (new drug never approved or marketed in US)
- Binds to A and P site on 50S subunit, prevents binding of tRNA
- E.g. Lefamulin (recently approved for treatment of community acquired pneumonia)
- Activity against S.pneumoniae and S.aureus inc. MRSA
Aminoglycoside targets and examples
- Induce misreading of genetic code, interferes with codon:anticodon pairing
- E.g. Gentamicin (commonly used), amikicin, trobramycin, neomycin and streptomycin
- Broad spectrum, used mainly to treat gram negative bacteria
- Bactericidal effect
- Narrow therapeutic index (neurotoxic and otoxic)
Tetracycline target and examples
- Blocks initiation by inhibiting tRNA, binding to the A site on the ribosome
- E.g. Tetracycline, minocycline, doxycycline
- Broad spectrum but used less due to bacterial resistance
- Usually bacteriostatic
Disadvantages of tetracycline
- Chelator of metal ions: binds to calcium, magensium, iron and aluminium
- Binds and forms non-absorbable salt which deposits in bones and teeth
- Must be avoided in children <8 years (bones are growing) and pregnant women)
- Patients warned not to drink milk or yoghurt due to formation of calcium salt and inactivation of tetracycline
Bacterial folate synthesis
- Bacteria synthesise their own folic acid whereas mammals aquire folate from diet
What is synergy?
Combination of compounds increases efficacy of one or both compounds than compounds alone.
Fluoroquinolones targets (DNA synthesis) and examples
- Inhibit two enzymes essential for DNA synthesis: DNA gyrase (gram negative) and Topoisomerase IV (gram positive)
- Human cells lack DNA topoismerases
- E.g. Ciprofloxacin, levofloxacin, moxifloxacin
- Bactericidal effect
Rifamycin target (RNA synthesis) and examples
- Inhibit bacterial DNA-dependent RNA mechanism
- Halts initiation of mRNA transcription and translation of polypeptides
- E.g. rifampicin
- Bactericidal activity against gram positive and mycobacteria (used more in TB)
- Induces cytochrome P450 enzymes so can increase metabolisms of co-administered drugs which are substrates leading to sub-therapeutic levels
Antimicrobial resistance
- Inability to kill or inhibit organism with clinically achievable drug concentrations
- Resistance may be naturally resistant (innate)
- Resistance may be acquired (mutation or acquisition of foreign DNA)
Factors which may accelerate the development of resistance
- Inadequate levels of antibiotics at the site of infection
- Duration of treatment too short
- Overwhelming numbers of organisms
- Overuse/ misuse of antibiotics
General mechanisms of of resistance (7)
- Altered permeability
- Inactivation/ destruction of antibiotic
- Altered binding site
- New binding sites
- Efflux (flowing our of a substance) mechanisms (pumps)
- Bypass of metabolic pathways
Classifications of bacterial resistance
- Intrinsic, e.g. gram negative barrier is hard to penetrate due to outer membrane permeability
- Acquired:
- Modification of genetic material/acquisition of new genetic material
- Vertical gene transfer (spontaneous mutations). Once developed, transferred directly to bacterial descendant during DNA replication
- Horizontal gene transfer (exchange of genes between strains and species)
Horizontal gene transfer (3 types)
- Transformation: naked DNA uptake
- Transduction: bacterial DNA transferred by virus (e.g. Phage)
- Conjugation: DNA transferred through cell to cell contact
Selective pressure in bacteria (susceptibility and resistance)
- With high numbers of bacteria, some will be resistant to antibiotics
- Low drug concentrations will kill susceptible bacteria but not mutants
- Resistant members multiply due to preferred conditions
Multi-drug resistant (MDR) bacteria
Resistant to multiple antimicrobial classes (at least one agent in three or more classes). Often found mainly in hospitals and long-term care facilities.
ESKAPE pathogens
- Enterococcus faecium (VRE - vancomycin-resistant enterococcus)
- Staphylococcus aureus (MRSA - methicillin-resistant A. aureus)
- Klebsiella pneumoniae (carbapenemase producer)
- Acinetobacter aeruginosa
- Pseudomonas aeruginosa
- Enterobacter species (ESBLs producer)
What is tuberculosis?
- Bacterial infection in the lungs
- Caused by Mycobacterium tuberculosis. Resistant to antibiotics: slow growth (most antibiotics active against rapidly growing cells) and lipid rich cell wall (impermeable)
- Most often affects the lungs (can affect other sites)
- Contagious (spreads through air droplets)
- Considered leading cause of death from single infections agent (higher than HIV however large percentage of HIV patients die from TB)
TB epidemic data (from 2017)
- 8 countries account for 2/3 s of global number of incidences: China, Indonesia, Philippines, Pakistan, Nigeria, Bangladesh, South Africa
TB statistics (from 2018)
- 1.5 million people died from TB (inc. 251,000 among HIV patients)
- Leading killer of people with HIV
- Major cause of death due to antimicrobial resistance
- 10 million people fell ill with TB (5.7m men, 3.2m women, 1.1m children)
Discovery of the cause of TB
- In 1882, Robert Koch discovered TB caused by Mycobacterium tuberculosis
- Lipid rich cell wall containing mycolic acid creates waxy coating (prevents digestion) and low permeability (prevents drug access)
- Gram positive aerobic bacilli
- Slow growth rate compared to most bacteria (15-20h for cell division)
TB symptoms
Latent TB:
- No symptoms
- 5-10% will develop TB disease
- Risk higher in immunocompromised (e.g. HIV patients)
TB disease:
- Weight loss and loss of appetite
- Night sweats
- Fever
- Fatigue
- Chills
- In lungs: coughing and chest pain
Aims of TB treatment
- Cure individual patient of TB
- Minimise risk of death and disability
- Prevent relapse
- Decrease transmission to others
- Prevent development of acquired resistance
- Treatment must be for at least 6 months
Management of TB
Physical measures:
- Isolate patients with possible TB in private room with negative pressure
- Medical staff wear high-efficiency disposable masks sufficient to filter bacillus
- Continue isolation until sputum spears are negative for 3 consecutive determinations (usually after approx. 2-4 weeks of treatment)
Anti TB targets
- Isoniazid: Inhibits synthesis of mycolic acid
- Ethambutol: Inhibits cell wall synthesis
- Pyrazinamide: Mode of action not fully understood
- Bedaquiline: Inhibits ATP synthesis
- Para-aminosalicylic acid (PAS): Disrupts folate metabolism
- Rifampicin: RNA synthesis inhibitor
Treatment for Drug-Sensitive TB
- 1st line treatment is combination of 4 drugs: Isoniazid, Rifampicin, Ethambutol, Pyrazinamide
- Oral
- Taken daily for at least 6 months
Isoniazid’s (INH) mode of action
- Inhibition of synthesis of mycolic acid
- Bactericidal in rapidly dividing mycobacteria
- Delivered as pro-drug and activated by catalase-peroxidase KatG
Resistance and disdvantages of INH
- Resistance to INH alone/with other drugs is 2nd most common type (mutations in KatG gene prevents conversion of pro-drug)
- Hepatotoxicity (more common in older people and alcoholics)
Rifampicin (5)
- Polyketide with a napthoquinone core
- Mode of action includes inhibition of DNA dependent RNA polymerase in prokaryotic cells
- One of most active anti TB agents known, also effective against leprosy and most gram positive bacteria
- Resistance develops rapidly
- Oral delivery and good distribution is tissues and body fluids like cerebrospinal fluid (CSF)