Section 4: Lipids Flashcards
Lipids - amphipathic
Mostly hydrophobic (hydrocarbon), but with a polar or charged region (carboxylate)
Lipids - solubility
Usually not water soluble
What do lipids form
Don’t form large covalent polymers
Tend to form non-covalent higher-order structures
Lipids: Formation of non-covalent higher-order structures
Sequester the hydrophobic hydrocarbon component(s) from the (polar) aqueous environment
Stabilised by vdW interactions between hydrocarbon part
Fatty acids - strength
Weak acids - deprotonated at physiological pH (carboxylate form)
Fatty acids: Alkyl chains may be…
Saturated (fully reduced)
Unsaturated (some C=C):
- monounsaturated: one double bond
- polyunsaturated: many double bonds
Fatty acids are a type of _____
Lipid
Fatty acids: Saturated hydrocarbon chains
Can rotate freely about any C-C bond
Fatty acids: Unsaturated hydrocarbon chains
Can’t rotate around the double bond
Double bond is usually cis, which makes the hydrocarbon chain bend
Fatty acids: Number of carbons
Most naturally occurring fatty acids have an even no of C atoms because fatty acid synthesis involves adding 2C units
Fatty acids: Temperature and C
As no of Cs increase, melting point increases for both saturated and unsaturated
Fatty acids: Temperature and double bonds
Double bonds greatly reduce temp of melting point
Essential fatty acids
Required for good health and must be ingested, because mammals can’t introduce double bonds in fatty acids beyond carbon 9 and 10
Fatty acids: Major physiological roles
- Source of hormones and intracellular messengers
- Building blocks of micelles and membranes
- Post-translational modification of proteins
- Fuel
Fatty acids and lipids: Micelle
Fatty acids are wedge-shaped and tend to form spherical micelles
Polar head groups tend to be larger than their single hydrocarbon chain –> forms curved structure
Fatty acids and lipids: Micelles and phospholipids - number of tails
Micelle: one tail
Phospholipids: 2 tails
Fatty acids and lipids: Phospholipids
More cylindrical and pack tgt to form a bilayer structure
Biological membranes: Hydrophobic core - length
Hydrophobic core ~30Å
Hydrophobic core + interfacial on either side = ~60Å
Biological membranes: Interfacial region
Polar
Has some lipid headgroups, but also some water molecules - not a sharp boundary
Biological membranes: Lipid tails
Never perfectly straight
Biological membranes: Lipid tails - temp
Higher temp = more mobile
Biological membranes: How does the cell modify its curvature
By putting diff kinds of lipids in the membrane
What are found in biological membranes
Proteins, channels, sugars
Provide info to cell and ways to pass signals through the membrane
Lipid bilayers: States
Gel state (below Tm) Liquid crystal state (above Tm)
Lipid bilayers: Gel state
Lower temp and more saturated fatty acids
Hydrocarbon tails are packed tgt in a highly ordered gel state
Lipid bilayers: Liquid crystal state
Higher temp an d more unsaturated fatty acids
Movement of chains become more dynamic and interior of membrane resembles a liquid hydrocarbon
Fatty acids: Saturated vs unsaturated
Unsaturated fatty acids bent –> can’t pack as well tgt
- fewer vdW can form
- more dynamic / liquid-like
Major types of membrane lipids
Glycerophospholipids (glycerol backbone)
Sphingolipids (sphingosine backbone)
Sterols
Membrane lipids: Glycerophospholipids
Built on a glycerol backbone
Has a phosphate
2 fatty acid tails (any kind) added onto an O each
Membrane lipids: Sphingolipids
Already has a long hydrocarbon chain, so only one more fatty acid needs to be added, which is added onto a N
Head group attached to C1
Membrane lipids: Glycerophospholipid - basic structure
Phosphate group Glycerol backbone R1 and R2 = fatty acids R3 = head group 2 hydrophobic (fatty acid) chains point into membrane and phosphate group points in opp direction
Membrane lipids: Glycerophospholipids - phosphatidylserine (PS)
‘Eat me’ signal
Normally located in inner leaflet of PM
Moves to outer leaflet in apoptosis and attracts phagocytes to consume cell remnants
Membrane lipids: Cardiolipin (diphosphatidylglycerol)
4-tailed glycerophospholipid
Very large head group
Glycoglycerolipids are found where
Less common in animal membranes
Common in plant and bacterial membranes
Glycoglycerolipids - structure
Has a glycerol backbone
Carbohydrate/sugar attached via a glycosidic bond
Sphingolipids - where is it found
PM of all eukaryotic cells
Highest conc in CNS cells
Sphingolipids - function
Participate in cell signaling, e.g. regulating cell differentiation, proliferation, programmed cell death
Ceramides - basic structure
Also built on sphingosine backbone
Sphingolipid vs ceramide
In a ceramide, there isn’t really a head group attached to C1, just an OH that’s already attached
Whereas sphingolipid has a head group
Ganglioside - function
Sit in cell membrane and send out a signal which is recognised by other molecules that then lead to certain functions
Ganglioside - structure
Oligosaccharide linked to terminal hydroxyl group of a ceramide via a glucose molecule
Oligosaccharide chain contains at least an acidic sugar or sialic acid
Ganglioside - diarrhea
Ganglioside recognition and binding is the first step in the development of at least 2 diarrhea conditions
Ganglioside - immune system
Crucial for binding of immune system cells to sites of injury in the inflammation response
Gangliosides - Cholera
Pathological condition characterised by severe diarrhea
Cholera toxin recognises and binds to gangliosides (GM1) to gain access to inside of cell
Gangliosides - Enterotoxigenic E. coli
Most common cause of diarrhea
Like cholera, also produces a toxin that recognises and binds to gangliosides to gain access to cell
Cholera and diarrhea
Large V of water are normally secreted into small intestinal lumen, driven by Cl- secretion
Most of this water is absorbed before reaching the large intestine
Diarrhea occurs when secretion of water into intestinal lumen exceeds absorption
Cholera and diarrhea - steps
Cholera toxins (and other bacterial toxins) bind to gangliosides and strongly activate adenylyl cyclase --> increase in intracellular conc of cAMP Cl- channels open --> uncontrolled secretion of water (and Na+, K+, HCO3-) into intestinal lumen Cholera toxin also affects enteric nervous system --> independent stimulus of secretion
Secretory diarrhea - fasting
Not resolved by fasting
Often lethal
Cholera toxin absorption stimulates / inhibits…
Stimulates cAMP production
Stimulates epithelial Cl- secretion
Inhibits Na+ absorption
Cholera - treatment
GM1-coated nanoparticles act as decoys to absorb cholera toxin before it binds to epithelial cells
Where is the highest conc of gangliosides found
In nervous system - 6% of lipids
Gangliosides - Tay-Sachs disease
Gangliosides in nervous system usually degraded in lysosomes by sequential removal of their terminal sugars
In Tay-Sachs disease, one removal enzyme is missing or deficient –> neurons become swollen with lipid-filled lysosomes
Gangliosides - Tay-Sachs disease - symptoms
Severe
Weakness and retarded psycho-motor skills before age 1
Demented and blind by age 2
Usually dead before age 3
Lipid composition
Varies between cell types and leaflets
Allows fine-tuning of membrane properties
Lipid membranes - asymmetric
Biological membranes are made of two layers / leaflets
Each leaflet faces a diff environment –> asymmetric
High conc of a lipid on one side = low conc of lipid on other side
Lipid membranes: Organelles vs cell membrane
Organelles:
Inner leaflet faces organelle interior
Outer leaflet faces cytoplasm
Cell membrane:
Inner leaflet faces cytoplasm
Outer leaflet faces environment
PM typically comprises __ diff lipid types
~60
Lipidation of proteins
Allows anchoring to membrane
Hydrophobic part slots into cell membrane
Type of lipid determines…
Protein location
Glycolipids are built on…
Either a glycerol backbone or sphingosine backbone
Fatty acids: How is fuel/fat stored
Stored as triacylglycerols
Excess from diet will also be stored here
Triacylglycerols AKA…
TAG
Neutral fats
Triglycerides
What are triacylglycerols formed from
Ester bonds between carboxyl groups of (same or diff) fatty acids (includes the C=O) and hydroxyl groups of glycerol
Fatty acids: Fuel - oxidation
Oxidation of fatty acids released from triacylglycerols produce energy for cellular process
Why are triacylglycerols/fats an efficient energy store
They are highly concentrated stores of metabolic energy;
- highly reduced (lots of ability to be oxidised)
- non-polar and so anhydrous
Can carry lots of energy into a small space and weight
Define anhydrous
Not much water
Fat yields ___x more energy than carbohydrates/proteins
~6.5x
What is the major energy storage form in most organisms
Fat
3 sources of fatty acids
- Digestion
- Adipose tissue
- Synthesis
Sources of fatty acids: Digestion - small intestine
Small intestine contains hydrolytic enzymes from pancreas which can be absorbed into the bloodstream
Sources of fatty acids: Digestion - chylomicrons
Transport triacylglycerols through lymph and bloodstream
What are bile salts
Emulsifiers
Amphipathic molecules synthesised from cholesterol in the liver and secreted from gall bladder
Transport of fatty acids and other lipids: Lipoprotein particles - function
Emulsify lipids for transport in the blood
Transport of fatty acids and other lipids: Lipoprotein particles - structure
Consists of a core of hydrophobic lipids (oil droplet) surrounded by a shell of more polar lipids and proteins
Transport of fatty acids and other lipids: Lipoprotein particles - apolipoproteins
Solubilise hydrophobic lipids
Contain cell-targeting signals; helps make sure the fats being transported end up in the right cell
Have a hydrophilic part that points outward
Lipoprotein particles - families
Chylomicron (Chylomicron remnant) VLDL (very low-density lipoprotein) IDL (intermediate density lipoprotein) LDL (low-density lipoprotein) HDL (high-density lipoprotein)
Lipoprotein density
Increases with increasing protein content (decreasing lipid content) because lipids are less dense than protein
Fats - solubility
Not soluble in water, therefore aren’t soluble in blood
How are fatty acids transported in blood
By lipoprotein particles
Density of water
Just under 1
Density of lipids vs water/protein
Lipids are generally less dense than protein and water
Lipids and proteins - density
More lipids = less dense
More proteins = more dense
Chylomicron remnants
What’s left over once the chylomicron has dropped off all its lipids
Lipoproteins: Chylomicron
Delivers dietary triacylglycerides to target tissues
Lipoproteins: Chylomicron remnant - function
Delivers dietary cholesterol esters left from chylomicron to liver
Lipoproteins: VLDL
Transports endogenous triacylglycerides from liver to periphery
Lipoproteins: IDL
Remnants of VLDL
Lipoproteins: LDL
Major transporter of cholesterol to periphery
Lipoproteins: HDL
Picks up cholesterol that’s no longer needed from circulation
Lipoproteins: Good vs bad cholesterol
HDL = good cholesterol LDL = bad cholesterol
Most lipids are ingested in the form of _____
Triacylglycerols, so must be degraded to fatty acids for absorption across the intestinal epithelium
How are triacylglyceroles in intestinal lumen solubilised
By bile salts
Digestion of dietary lipids - steps
- Cholic acid ionises to give its bile salt
- Hydrophobic surface of bile salt molecule associates with triacylglycerol, several of which aggregate to form a micelle
- Hydrophilic surface of bile salts face outward, allowing micelle to associate with pancreatic lipase/colipase
- Hydrolytic action of lipase frees fatty acids to associate in a much smaller micelle that is absorbed through the intestinal mucosa
What is cholic acid
A typical bile acid
COOH loses H to become COO- (ionised)
Triacylglycerides are hydrolysed by…
Pancreatic lipases
Digestion of dietary lipids: Pancreatic lipases
Secreted from pancreas
Catalyse hydrolysis of ester bonds between fatty acyl group and glycerol of triacylglycerols
- first hydrolyses off one of the outer fatty acids –> diacylglycerol
- then acts on other outer fatty acid –> monoacylglycerol
Releases 2 free fatty acids
Structure of bile salts
Triacylglycerols point in the same direction - this side is the hydrophilic face –> becomes the outer part of micelle
Other side is hydrophobic
Monoacylglycerol
Glycerol backbone with one acyl chain attached
Where do chylomicrons bind to membrane-bound lipases
At adipose and muscle cells
Fatty acids from adipose tissue: Stages of processing
- Mobilisation
- Activation and transport
- Degradation
Fatty acids from adipose tissue: Mobilisation
Triacylglycerols are degraded to free fatty acids and glycerol
hydrolysed by hormone-stimulated lipases in adipose tissue
Free fatty acids and glycerol are released from adipose tissue and transported to energy-requiring tissues
Fatty acids from adipose tissue: Mobilisation - enzymes
ATGL: adipose triglyceride lipase
triacylglycerol –> diacylglycerol
HSL: hormone-sensitive lipase
diacylglycerol –> monoacylglycerol
MGL: monoacylglycerol lipase
monoacylglycerol –> glycerol
Fatty acids from adipose tissue: Mobilisation - what can glycerol be used for
Glycolysis
Gluconeogenesis
Fatty acids from adipose tissue: Mobilisation - what happens to the free fatty acids produced
Transported into the blood plasma and undergoes fatty acid oxidation –> acetyl CoA –CAC–> CO2 + H2O
How are fatty acids transported
Since not soluble, they are transported bound to protein serum albumin
Serum albumin - function
Bind molecules that are insoluble in water and deliver them to tissues via blood, e.g.
- fatty acids
- hydrophobic hormones
- drugs
- metal ions
Uptake of fatty acids - passive?
Originally thought to occur largely by passive diffusion
Now thought to be mostly facilitated and regulated by proteins
Fatty acids from adipose tissue: Activation and transport
Fatty acids arrive in cytosol, but fatty acid degradation occurs in mitochondria so must be activated and transported
Fatty acids from adipose tissue: Activation and transport - steps
- Activation via adenylylation (requires ATP)
- Transfer to carnitine (replace CoA with carnitine molecule)
Coenzyme A recycled and goes back to activate next fatty acid - Transport through mitochondrial inner membrane
- Reconjugation with CoA
Fatty acyl CoA goes to degradation pathway
Fatty acids from adipose tissue: Activation and transport - activated by?
Activated by formation of a thioester linkage to coenzyme A
Fatty acids from adipose tissue: Activation and transport - where does this take place
Outer mitochondrial membrane
Fatty acids from adipose tissue: Activation and transport - for fats to cross the membrane…
They must be conjugated to carnitine to enter the mitochondrial matrix
Fatty acids from adipose tissue: Activation and transport - carnitine acyltransferase I (CPT I)
Bound to outer mitochondrial membrane
Catalyses transfer of acyl group from coenzyme A to carnitine –> acyl carnitine
Fatty acids from adipose tissue: Activation and transport - translocase
Shuttles acyl carnitine across membrane
Fatty acids from adipose tissue: Activation and transport - carnitine acyltransferase II (CPT II)
Transfers acyl group back to coenzyme A
Is fatty acid degradation anabolic or catabolic
Catabolic - produces e- for oxidative phosphorylation
Is fatty acid synthesis anabolic or catabolic
Anabolic
What is fatty acid degradation
Degradation of a saturated acyl chain with an even no of C atoms attached to coenzyme A
Fatty acid degradation - double bonds / odd no of C atoms
Oxidation of an acyl chain containing double bonds or an odd no of C atoms requires additional steps
Fatty acid degradation: Pathway name
β-oxidation pathway
Fatty acid degradation: β-oxidation pathway - steps
Recurring sequence of 4 reactions:
- Oxidation of single bond to double bond. FAD –> FADH2
- Hydration - addition of water across double bond –> single bond. Forms an alcohol group
- Oxidation of alcohol to ketone. NAD+ –> NADH + H+
- Thiolysis - cleavage at β-C to release acetyl-CoA. Adds CoA to activate remainder of acyl chain for further rounds of β-oxidation
Fatty acid degradation: In each round of the β-oxidation pathway…
An acyl chain is shortened by 2Cs (in the form of acetyl-CoA)
Acetyl-CoA, NADH and FADH2 are generated
Fatty acid degradation: Where does the β-oxidation pathway occur
All reactions happen between α and β carbon of acyl-CoA molecule
α-C is next to carboxyl group, and next one is the β-C
Often the β-C is cleaved
Fatty acid degradation: β-oxidation pathway continues until…
There are no Cs left to remove
e.g. 7 rounds for C16
Fatty acid degradation: Fates of acetyl-CoA
Enters CAC or forms ketone bodies
Fatty acid degradation: Fates of acetyl-CoA - CAC
If fat and carbohydrate degradation are balanced, acetyl-CoA enters CAC
CAC: What does availability of oxaloacetate depend on
On the carbohydrate supply - formed from pyruvate
Fatty acid degradation: Fates of acetyl-CoA - Ketone bodies
When more fat than carbohydrate degradation (glycolysis)
Oxaloacetate is consumed to form glucose via gluconeogenesis
Examples of ketone bodies
Acetoacetate
β/D-3-hydroxybutyrate
Acetone
When are ketone bodies present in individuals
High levels of ketone bodies often present in blood of untreated diabetics
Also occurs when fasting or on low-carb diets
What are ketone bodies
Major fuel source for heart and kidney
Need to know what a ketone body looks like!
Which structures prefer ketone bodies
Heart muscle and renal cortex
Brain prefers glucose, but under prolonged starvation can adapt to get 75% of its energy from ketone bodies
Energy sources under starvation
After several days,
- slight increase in fatty acids
- decrease in glucose
- large increase in ketone bodies in plasma
Palmitoyl-CoA (C16) needs _ rounds of β-oxidation
7
in 7th cycle, C4 is cleaved into 2 molecules of acetyl CoA
Fatty acid degradation - equation
Palmitoyl-CoA + 7FAD + 7NAD+ + 7CoA + 7H2O –>
8 acetyl-CoA + 7 FADH2 + 7NADH + 7H+
Molecules of ATP produced from fatty acid degradation
~2.5 ATP per NADH
~1.5 ATP per FADH2
~12 ATP per acetyl-CoA
~2 used to activate palmitate (-2)
Where does fatty acid synthesis occur
Cytoplasm
Fatty acid synthesis: What is acetyl-CoA formed from
From pyruvate in the mitochondria (glycolysis)
Mitochondria aren’t naturally permeable to…
Acetyl-CoA
So citrate carries acetyl groups through the inner mitochondrial membrane to cytoplasm for fatty acid synthesis
Fatty acid synthesis: Committed step
Starts with carboxylation of acetyl-CoA (2C) to form malonyl-CoA (3C)
Burns 1 ATP - irreversible
Catalysed by acetyl-CoA carboxylase
Fatty acid synthesis: Acetyl-CoA Carboxylase 1 and 2
Cytoplasmic enzymes
Regulates fatty acid synthesis and degradation