Secretory Pathway Flashcards

1
Q

Describe the oath of the secretory pathway

A

ER to golgi to plasma membrane

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2
Q

Describe the path of the endocytic pathway

A

Cell surface to endosome to golgi/ER/endosome

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3
Q

How does material move from the rough ER to golgi?

A

Vesicle fusion

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4
Q

What does the trans golgi do?

A

Sorts out constitutively secreted proteins without the ned for signals

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5
Q

Where does glycoslation take place?

A

ER

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6
Q

What sorts of glycosylation can take place?

A

N- linked on Asp
O- linked on S/T

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7
Q

Describe how an Asp N-link forms

A
  1. Pre-formed oligosaccharide is added to an Asp in the ER
  2. Oligosaccharides are added and processed throughout the secretory pathway
  3. Oligosaccharides are trimmed and more sugars are added in the golgi
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8
Q

Why are proteins glycosylated?

A

Assist in folding
Can act as a ligand for intracellular trafficking/sorting and interactions with the extracellular matrix + proteins/sugars on other cells

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9
Q

What makes a suitable model organism to study cellular processes?

A

Simplicity- so single celled organisms
Allows analysis of specific types of secretion

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10
Q

What are some advantages of studying yeast for the secretory pathway?

A

Can do genetic studies between haploid and diploid
The entire genome sequence is known and fundamental pathways have been conserved
Cheap and easy to grow in large quantities
Limited gene diversity

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11
Q

What are some disadvantages of studying yeast for the secretory pathway?

A

Limited cell-cell contact, so not informative for multicellular organisms
Small (5μm) so high resolution imaging is difficult
Cell wall can prevent some studies such as microinjections

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12
Q

What hypothesis did Novick and Schekman have in 1980?

A

If proteins couldn’t be secreted (sec-), the cell density would increase as vesicles carrying the protein accumulates

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13
Q

What experiment did Novick and Schekman do in 1980?

A

Cells were analysed for their abilities to secrete invertase and acid phosphate at permissive and restictive temperatures
Secretory mutants synthesised by didn’t secrete them.
Heavier cells were analysed with electron microscopy to find alterations in ultrastructure, e.g accumulation of vesicles

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14
Q

How many genes were identified in Novick and Schekman’s experiments?

A

23
These were ordered by combining mutants from different classes

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15
Q

Describe the progress of α factor throughout the secretory pathway

A
  1. Modified in the ER by oligosaccharides
  2. Sugars are added in the golgi
  3. Proteolytically cleaved into 4 peptides before secretion
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16
Q

Why weren’t all the genes in secretory and exocytic pathway identified by Novick and Schekman?

A

Only temperature sensitive mutants were identified
Only secretion to the plasma membrane was identified- nothing to endosome or vacuole
Redundantly (rarely) functioning genes wouldn’t be identified

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17
Q

Where does the decision to traffic to the surface or lysosome take place?

A

Trans-golgi network

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18
Q

What pathways are affected by mutations between the endosome and lysosome?

A

Biosynthetic and degradative pathways

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19
Q

What is endocytosis?

A

Process where the plasma membrane invaginates into the cell
Produces a vesicle that can fuse with endosomes and enter the endo-lysosomal membrane system

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20
Q

What is the importance of endocytosis?

A

Retrieves molecules from the secretory vesicle for recycling
Downregulates certain signals
Remodels the cell surface

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21
Q

Describe the path of endocytosis

A

Plasma membrane
Endocytic vesicle
Early endosome
Late endosome
Golgi or vacuole

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22
Q

How were mutants in endosomal pathway identified?

A

End- screens looked at mutatants tht could not internalise lucifer yellow or an α-factor (pheromone)

23
Q

What does the lysosome (vacuole) do?

A

Degrades extracellular material from endocytosis
Degrades intracellular components through autophagy
It’s proteolytic enzymes are kept separate from the rest of the cell

24
Q

How are lysosome enzymes transported to the lysosome?

A

Secretory pathway and sorted at the trans-golgi network

25
How was vacuolar protein sorting (VPS) studied?
Carboxypeptidase Y (CPY) moves ER -> Golgi -> Lysosome This can be tracked with a colour based assay vps mutant strains were combined to find the order of action of genes
26
How is carboxypeptidase Y recycled?
It has an adaptor protein which binds to its tail and leads to it moving to the golgi to be recycled
27
what receptor recognises CPY in the late golgi?
Vsp10
28
What does the transport step of CPY require
Clathrin and 2 adaptors: Gga1 and Gga2
29
Describe the nuclear pore
Formed at inner and outer membranes of the nuclear envelope 30 different nucleoporins Important in DNA histone synthesis in the cytosol
30
Where are ribosomes synthesised
The nucleus, so have to diffuse out
31
How can proteins be recognised for trafficking through the nuclear pore?
Peptide sequence on the end of a protein. Rich in Lys, Arg and Pro
32
What sort of experiments were used to work out machinery for translocating proteins?
In vitro experiments, e.g protein import into nucleus
33
What signals are recognised for a protein to move from nucleus to cytosol?
N-terminal sequence is recognised by sec61 and fed through When the stop transfer sequence is reached, the C-terminus enters the cytosol
34
Describe how chaperones in the ER assist protein folding
BiP (chaperone) associates with newly folded protein to ensure it correctly folds. It is bound until the protein folds correctly, so it can be packaged. e.g light chains forming on an antibody
35
What stimulates the unfolded protein response in cystic fibrosis?
CFTRδ508 misfolds proteins, stimulating the UPR. This is becuase the ER is overwhelmed
36
What happens in the unfolded protein response (UPR)?
Translation shuts down Too many proteins activates apoptotic pathways Upregulated chaperone synthesis
37
Describe how proteins move into mitochondria
N-terminal is recognised by TOM Protein translocates though TOM and chaperones in intermembrane space assemble polypeptides. They move through TIM23 into the matrix
38
How does TOM recognise proteins?
Recognises structure, rather than amino acids Hydrophobic residues bind in a hydrophobic groove
39
What are some features of vesicular transport?
Vesicles are targeted to their destination with high fidelity Cargo buds off the donor membrane Fusion is non-leaky Transport vesicles are coated
40
What are the main features of vesicle formation?
GTPase Adaptor proteins (recognise cargo) Coat
41
What is the founding member of the GTPase family involved in vesicular transport
Ras Family includes Rabs, Arfs, Ran, Rho
42
What is a COPII coated vesicle made up of?
GTPase: Sar1 (Arf) Sec12(GEF) Adaptor: Sec23/24 complex 23 binds Sar1, 24 binds cargo Coat: Sec 13/31 complex
43
How is the COPII coated vesicle suited to its function
Sec23/24 has a bow-tie shape allowing it to recognise a curved shape High SA:V of the bud
44
How is COPII studied?
Reconstitution with ER membranes containing ribophorin. These are mixed with COPII vesicles containing p58. These are separated on a sucrose gradient and centrifuged to see if ER has taken up p58
45
What is a GDP mutant?
Mutant where GEFs have been sequestered
46
What is a GTP mutant?
Mutant where GTP cannot be hydrolysed
47
What effect does Sar1GDP have on COPII formation?
Inhibits it
48
What do COPII and COPI carry?
COPI- Retrived/newly synthesised proteins COPII- Newly synthesised proteins
49
What do adaptor proteins do?
Recognise and select cargo, ensuring specificity Link the coat to membrane Recognise motifs in cytoplasmic domains of membrane proteins
50
What sorting signal does TfR (Transferrin receptor) have?
Tyrosine-based YxxPhi
51
What sorting signal does acetylcholine have?
Di leucine [DE]xxxLL
52
What is AP2?
Major clathrin adaptor Recognises a variety of peptide motifs At the plasma membrane
53
Where are AP1 and AP3 located?
AP1- endosomes and TGN AP3- TGN and lysosomal related organelles
54
Describe AP1 and AP2 structures
Appendages that interact with proteins β2 binds to clathrin μ2 and σ2 recognise signals on TM proteins