SAQs Flashcards

1
Q

Secondary immunodeficiency is more important than primary immunodeficiency – discuss the extent to which this statement is true then illustrate your argument with a range of relevant examples.

A

Immunodeficiencies can be classified as primary (PID) or secondary (SID), secondary immunodeficiencies are more prevalent and have broader public health implications.
Primary Immunodeficiencies (PID)
Primary immunodeficiencies are rare, inherited conditions that impair immune function. Examples include:
Severe Combined Immunodeficiency

(SCID): A severe disorder with defects in both T and B cells, leading to life-threatening infections if untreated.

X-linked Agammaglobulinemia (XLA): Results in a lack of B cells and increased bacterial infections.

Chronic Granulomatous Disease (CGD): Impairs phagocytosis, leading to recurrent infections.

While significant, these disorders are less common and often managed with treatments like bone marrow transplants or immunoglobulin therapy.

Secondary Immunodeficiencies (SID)
Secondary immunodeficiencies are more common and arise due to external factors. Examples include:

HIV/AIDS: HIV targets CD4+ T cells, leading to immune depletion and increased susceptibility to infections and cancers.

Cancer Treatment: Chemotherapy and radiation suppress immune function, leaving patients vulnerable to infections.
Corticosteroid Therapy: Long-term use can impair immune responses and increase susceptibility to opportunistic infections.

Malnutrition: Severe malnutrition weakens the immune system, making individuals prone to infections.
SIDs are often more prevalent and have significant clinical consequences, but many can be managed or reversed with treatment.

Importance of SID vs PID
While primary immunodeficiencies are rare, secondary immunodeficiencies are more widespread and can affect individuals of any age. SIDs, such as those caused by HIV or cancer treatments, are treatable and often reversible, making them a major focus in clinical practice.

Conclusion
Secondary immunodeficiencies are more clinically important than primary immunodeficiencies due to their higher prevalence, broad causes, and potential for treatment. Though PIDs are crucial for understanding genetic defects in immunity, SIDs represent a more pressing public health concern that can be managed with timely interventions.

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2
Q

Discuss the immunological processes involved in tumour immune evasion.

A

Tumor immune evasion involves several mechanisms that allow cancer cells to avoid detection and destruction by the immune system.
The tumour cells themselves downregulate the MHC I molecules and also MHC II and co-stimulators not expressed. This means if you don’t have MHC I or MHC II then you are not going to engage with the CD4 helper cells or cytotoxic t-cells so they wont be able to kill the tumours.

Suppressive tumour products released eg TGFb – tumour cells are famous for having in their environment a lot of phosphatin serum, the apoptopic cell maker, which can react with phosphotirium receptors and tell macrophage to respond in an anti-inflammatory way.

Neonatal tolerance – if you have got normal proteins that are in the neonate then you’re just tolerised and not going to respond.

Immunoselection – you have a heterogenous tumour and if your immune system is responding, it might remove 99% and all its cells but because it’s heterogeneous there might be a few cells that get left behind as the immune system doesn’t recognise them so antibodies don’t respond and get rid of them so you get this immunoselection for the cells that cannot be seen.

Antigenic modulation – if you look at a fast growing cancer cell the cells have a higher mutation rate so you can get antigenic modulation and they basically just keep changing their antigens so the antibodies you made no longer work.

Antigenic Masking – antigen masking is where the antigen that your antibody could respond to doesn’t have access to as it is masked by surrounding receptors.

Immunosuppression – with tumour immune evasion, immunosuppression can be mediated through the normal checkpoints, we don’t want the immune system to overreact or get instigated to easily so we have multiple receptors engagement and multiple signals to turn it on but we also have inhibitory signals including:
PD-1/PD-L1 – to control immune responses so cell-cell interactions and all it takes for is the cancer cell to upregulate this switch off signal.
T cell phenotype programming

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3
Q

What is a vaccination

A

A vaccine is a preparation of antigenic material used to induce immunity against pathogenic organisms. A vaccination is an intentional administration of a harmless or less harmful (attenuated) form of a pathogen to induce a specific immune response that protects that individual against later exposure to the same pathogen – the deliberated induction of an adaptive immune response

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4
Q

what is the purpose of having a vaccine?

A

The purpose is to generate memory cell to be there to fight pathogen for when infection comes about in secondary encounter. The antibody response is much faster and more effective than the first time around because the memory cells are at the ready to pump out antibodies against that antigen.
Vaccination is an important way of preventing the development of disease in our bodies and stopping us from being ill from infections.

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5
Q

List or outline the types of vaccines

A

Live Vaccine - Attenuated bacteria and Attenuated virus
Killed Vaccines
Toxoid Vaccines
Conjugate Vaccines
Peptide Vaccines

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6
Q

Outline the ideal requirements to generate ideal vaccines?

A

Safe
Provide long-lasting & effective protection
Neutralizing antibodies
Protective T-cells
Few or no side effects
Biologically stable
Easy to distribute & administer
Cheap to produce
Acceptable to general public

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7
Q

Can you state 5 signs that contribute to primary immune deficiency?

A

8 or more new ear infections in a year
2 or more serious sinus infections in a year
Antibiotics for 2 months without effect
2 or more pneumonia in a year
Recurrent, deep skin or organ abscesses
2 or more deep-seated infections such as osteomyelitis, cellulitis, or sepsis
Surgical intervention for chronic infections
Persistent thrush in the mouth or elsewhere on the skin after age 1 year
Failure to thrive
Family history of primary immunodeficiency

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8
Q

Why does the killed virus or bacteria treated by chemicals cause problems to the immune system.

A

The affinity of the immunoglobulin will be affected when the memory cell encounters with the pathogen in real life.the treated immunogenic epitope structure will be changed compared to the real pathogen immunogenic epitope structure

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9
Q

if a patient comes with a hyper IgM result what is the first sign that really indicates this.

A
  • it indicates that b lymphocytes lack CD4 receptors with the t cell so cannot receive IL-4 or signal from the t lymphocytes and therefore can not go into class switch.
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10
Q

A 14-month-old girl was immunized with the first dose of MMR (measles, mumps, and rubella) vaccine.
How can she produce antibodies to the different immunogens from measles, mumps, and rubella?

A

Combinatorial diversity – random gene rearrangement and H & L chain combination
Junctional diversity.
Somatic hypermutation.

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11
Q

A 14-month-old girl was immunized with the first dose of MMR (measles, mumps, and rubella) vaccine.
How can her T cells respond to the different immunogens from measles, mumps, and rubella and generate memory?

A

Combinatorial diversity – random a & b gene rearrangement and a & b chain combination
Junctional diversity.

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12
Q

An infant boy came for a clinical examination and the doctor found that the patient had small lymph nodes. Laboratory results showed a defective Bruton’s tyrosine kinase (BtK). Discuss with reference to clinical disorders of immunodeficiency the following questions:

What kind of immunological disorder does this infant have? (1 marks)

A

X-linked agammaglobulinemia aka Bruton’s Disease (Ab deficiency).

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13
Q

An infant boy came for a clinical examination and the doctor found that the patient had small lymph nodes. Laboratory results showed a defective Bruton’s tyrosine kinase (BtK). Discuss with reference to clinical disorders of immunodeficiency the following questions:

The infant has been experiencing recurrent bacterial infections that started after three months since he was born. What treatment in addition to antibiotics should be given to these patients and why? (3 marks)

A

Treatment with immunoglobulin (IV 1g) Because the patient cannot develop normal B lymphocytes

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14
Q

Define Primary and Secondary immunodeficiency? (2 marks)

A

Secondary immunodeficiency (SID) occurs when the immune system is weakened by another treatment or illness.
Primary immunodeficiency (PID) is a term used to cover a Large number of different conditions that affect how the body’s immune system works.

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15
Q

Why is IgA important?

A

Immunoglobulin A (IgA), as the principal antibody class in the secretions that bathe these mucosal surfaces, acts as an important first line of defence. IgA, also an important serum immunoglobulin, mediates a variety of protective functions through interaction with specific receptors and immune mediators.

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16
Q

How are sIgA antibodies transported?

A

IgA-mediated excretory pathway

Polymeric IgA binds to the pIgR on the basolateral surface of epithelial cells, and is taken up into the cell via endocytosis.

17
Q

Why do antibodies need an Fc region?

A

the Fc region of antibodies is crucial for triggering immune responses. It interacts with immune cells and receptors to promote functions like phagocytosis and complement activation.

18
Q

What are the causes of chlamydia?

A

Chlamydia is caused by the bacterium Chlamydia trachomatis
Chlamydia trachomatis is an Obligate intracellular pathogen – the bacteria can’t make enough ATP to sustain the metabolism outside of a host cell so therefore it acts as an almost energy parasite as it needs to infect host cells in order to replicate.
Chlamydia trachomatis is also Gram variable - both pink and purple cells due to the unique cell wall structure which is an important virulence factor.

19
Q

What are the features of chlamydia?

A

2 major biovars of chlamydia
Trachoma – consist of serovars of Chlamydia trachomatis A, B and C so these serovars cause trachoma – trachoma is not sexually transmitted and is the worlds leading cause of infectious blindness. Transmitted through direct contact.
Urogenital biovars of Chlamydia trachomatis covers the serovars D-K so these serovars cause infection to the urogenital tract. Part of the urogenital biovar does also include serovars L1, L2 and L3 which cause lymphogranuloma venereum (LGV)

20
Q

How is chlamydia spread? (transmission)

A

by sexual contact – unprotected vaginal, anal or oral sex and acute clinical manifestations are usually urethritis, cervicitis, proctitis
perinatal transmission – transmitted by infected mother to unborn child during delivery resulting in eye infections, conjunctivitis, or lower respiratory tract infections, pneumonia.

21
Q

How is chlamydia treated?

A

Antibiotics – 95% successful if taken correctly: Doxycycline – 100mg twice a day for 7 days – it is a tetracycline antibiotic so the mechanism of action is it inhibits protein synthesis
Partner notification is important – both current and past so they can be tested, and advice is to abstain from sex.
Avoid sexual contact with high-risk partners – people that are likely to be engaging in unprotected sexual activity with multiple partners.

22
Q

Why is infection of the male genital tract more symptomatic?

A

fewer microorganisms and bacterial cells in the lower pH environment in females and easier to miss unusual discharge in females whereas penile discharge is an obvious sign.

23
Q

What is the developmental cycle of chlamydia?

A

Adherence of elementary bodies

internalised into cell by endocytosis

24 hours post infection of that cell, the elementary bodies undergo a kind or differentiation and reorganisation

40 hours post infection, the reticulate bodies will be differentiated and they return to elementary bodies and eventually the inclusion grows to such a size that through reverse endocytosis or through lysis of the cell, the elementary bodies are then released.

24
Q

What might be the symptoms of the patient presenting with sepsis?

A

Temperature above 38.3 or less than 36
Heart rate greater than 90 beats per minute
Respiratory rate greater than 20 - elevated
And can actually alter mental state
Bloods will present as
White cells less than 4x109/l or greater than 12x109/l
Glucose greater than 7.7mmol/l (if the patient isn’t diabetic)

25
What is the natural resistance that exists in micro-organisms?
Natural resistance includes: Lack of transporter - the microorganism has to take up the antibiotic and many antibiotics rely on natural transport system Lack of target - Some microorganisms have a lack of a target – e.g penicillin – penicillin inhibits peptidoglycan via synthesis of the cell wall. Micro-plasma does not have a bacterial cell wall Outer membrane (permeability barrier) - Many bacteria, including all gram-negative bacteria have an outer membrane which act as a barrier for the antibiotic getting into the cell.
26
How do they acquire natural resistance?
2 main methods where bacteria acquires resistance: Vertical gene transfer - Where a microorganism when growing suddenly develops a mutation that makes that organism more resistant to antibiotics and passes it on to its progeny. Horizontal gene transfer (HGT) - Includes a number of different mechanisms. Transduction – occurs when bacteria-specific viruses (bacteriophages) transfer DNA between two closely related bacteria. So the phage’s have in their genome resistance to antibiotics and they are able to pass this on in the process of transduction and go into the environment and infect other bacteria. Transformation - Transformation is a process where parts of DNA are taken up by the bacteria from the external environment. This DNA is normally present in the external environment due to the death and lysis of another bacterium. Conjugation - Conjugation occurs when there is direct cell-cell contact between two bacteria (which need not be closely related) and transfer of small pieces of DNA called plasmids takes place. It’s where two adjacent bacteria can produce a tunnel called a sex pilus to connect between 2 bacteria's and can use this tunnel to pass DNA between them.
27
What are the biochemical mechanisms of antibiotic resistance and how do they work?
Enzymatic inactivation of antibiotic - Example – penicillin - Beta –lactamase Penicillin structure = house and garage (circled in red) Microorganisms have developed enzymes that destroy the structure and the way they do this is they break this bond which is called the beta lactam ring. organisms have developed enzymes that break the beta-lactam ring and renders organisms’ resistance. Decreased cell membrane permeability Organism becomes less permeable to antibiotic e.g.Imipenem Imipenem which is taken up by the organism needs a transport protein called OprD (porin), porin facilitates the transport of an antibiotic, imipenem wants to get into a cell. Porin facilitates imipenem uptake in P. aeruginosa. Resistant strains are downregulated for this protein. So by downregulating it, it means it doesn’t make as much so there aren’t as many transport channels for the antibiotic to go into or there is resistance. Efflux Multidrug efflux pumps (MDRs) - what they do is sit in the membrane of the bacteria and they pump out antibiotic that has gotten into cell. So they recognise it and pump straight out Altered target sight e.g aminoglycosides Altered Ribosome Binding Sites Streptomycin works by binding onto ribosomes and prevents the production of proteins. Mutation can occur which changes structure of ribosome so key (streptomycin) can no longer fit so can no longer inhibit the ribosome therefore resistance. Altered target enzymes e.g.mecA in MRSA MRSA becomes resistant to penicillin by replacing its usual penicillin-binding protein with a new one produced by a gene called mecA. Protection of target site e.g tetM gene have protein that syntheisis the protect target sites of antibiotics tetM gene is the protect target site. In some bacteria they are able to produce a protein that protects that site from the antibiotic. Ribosome protection proteins (RPPs) confer tetracycline resistance by binding to the ribosome and chasing the drug from its binding site. Overproduction of target site – tremethoprin Trimethoprim is an antibiotic used to treat urinary tract infections (UTIs). It works by blocking the production of folic acid in bacteria. Folic acid is crucial for bacteria because it helps them make DNA, and bacteria must produce their own folic acid to survive. Trimethoprim specifically inhibits an enzyme called dihydrofolate reductase (DHFR), which is involved in the pathway to produce folic acid. However, bacteria can become resistant to trimethoprim by producing large amounts of DHFR. This overproduction can "overwhelm" the effect of the antibiotic, allowing the bacteria to continue making folic acid despite the presence of trimethoprim. This resistance often occurs through mutations in the promoter region of the gene that produces DHFR, leading to increased production of the enzyme.
28
What are the evasion strategies (elephants)
Microbes use various evasion strategies to avoid detection and destruction by the immune system. These include: Evading Phagocytosis: Some bacteria can produce an outer capsule that prevents phagocytes (like macrophages) from engulfing them. Reducing Complement Activation: Certain microbes avoid being targeted by the complement system by preventing the binding of the convertase on their surface. Acceleration of Complement Breakdown: Some bacteria accelerate the breakdown of complement proteins once they are activated, preventing the immune system from effectively attacking the bacteria. Complement Deviation: Bacteria may secrete decoy proteins that mimic complement proteins, distracting the immune system and reducing its ability to target the actual bacterial cells. Interfering with Macrophages: Some bacteria induce apoptosis in macrophages. Additionally, bacteria may secrete decoy cytokines or regulatory proteins that turn off macrophage activity, preventing them from recognizing or attacking the bacteria. Antigenic Variation: Some bacteria can change the surface antigens on their cell membranes so they evade immune system detection, as the immune system can no longer recognize and target them effectively.
29
What are the Immune evasion mechanisms of viruses
Antigenic variation – e.g HIV Reducingcomplement activation - HIV Inhibition of innate immunity - HIV (hint = I I I
30
What are the Immune evasion mechanisms of bacteria
Excraceullar. antigenic variation - E. coll - Reduction of complement activation - many bacteria (hint is 2nd in list) Intracellular Inactivation of o2 and n2 species - leprae (hint is periodic table and Irish man) Inhibition of phagolysome formation- tuberculosis (hint is hard)
31
What are the Immune evasion mechanisms of parasites
Antigenic variation – trypanosomes (hint is trypan blue = goo = green) Antigen shedding – entamoeba (hint is snakes and fear of sick)
32
how to you prevent HIV from transmitting?
Safe sex - Male and female condom use Testing and counselling Voluntary medical male circumcision Antiretroviral (ART) use for prevention Harm reduction for injecting drug users Elimination of mother-to-child transmission – teach people
33
How does HIV replicate?
Attachment, fusion, uncoating, reverse transcription, nuclear import, integration, transcription, nuclear export, translation, assembly, budding, release, maturation
34
What are the challenges of the vaccine?
HIV replicates so quickly that variations in the genome occur very frequently Frequency of mutation Integrates into the host genome Correlates of immunity so we don't have any pictures of what an immune person would look. We don’t have any animal models as the virus is human based
35
What are the diagnostic methods?
Polymerase chain reaction Reverse transcriptase PCR Real time PCR Loop-mediated isothermal amplification (LAMP) Microarrays Branched DNA Sequencing (NGS)