Safety, Fixation, Fixatives, Tissue Processing Flashcards
4 major hazard classes
- biological/infectious
- mechanical
- chemical
- physical
what inactivates TB?
moist heat 121°C for 15min
what is CJD?
prion disease
what are prions susceptible to? (4)
- autoclave 1hr at 132-134°C
- 5% sodium hypochlorite for 2hrs
- concentrated formic acid for 1hr
- 1N sodium hydroxide for 1hr
what do prions remain infectious in? (3)
- well fixed tissues
- paraffin blocks
- stained slides
recommended treatment for prion tissues:
48h-14days in NBF
conc. formic acid for 1h
fresh NBF for 48h
how is waste formalin and equipment from prion fixing treated? (3)
- waste formalin is diluted with 2N NaOH and let stand for 1h
- steel instruments and grossing station treated with 1N NaOH for 1h, then soap + water
- gloves/gowns/aprons autoclaved or incinerated
4 classifications of infectious waste:
- pathologic material specimens
- blood
- microbiological/cultures
- sharps
what is the PEL?
Permissible Exposure Limit: the maximum safe concentration of exposure, monitored per 8hr shift
what is the TWA?
Time Weighted Average: aka action level
what is the STEL?
Short Term Exposure Limit: highest possible TWA exposure for any 15 minute period during the work shift. should be measured during worst 15min period
Always > TWA
what is the CL?
Ceiling Limit: maximum permissible instantaneous exposure at any time
what is the TWA for formaldehyde?
0.75 ppm
what is the STEL for formaldehyde?
2.0 ppm
difference between combustibles and flammables:
combustibles have a higher FP
flammables vapours must be carefully controlled and has special storage conditions
what is an oxidizer?
can initiate or promote combustion in any other material
difference between toxic dose and toxic concentration low:
toxic dose is for any toxic method other than inhalation
what is lethal dose low?
lowest dose reported to have caused human death OR lowest single killing dose for animals
what is LD50?
calculated dose of a chemical expected to cause the death of 50% of an experimental animal population through any route EXCEPT inhalation
what is a class A fire?
ordinary combustibles (paper, wood)
what is a class B fire?
flammable liquids and gases, require oxygen to be blocked from the fuel
what is a class C fire?
electrical
what is a class D fire?
combustibles that are difficult to extinguish (metals like magnesium)
what are the colour categories of the National Fire Prevention Association?
Red = flammability
Yellow = instability
White = special (strong oxidizer, water reactive)
Blue = health
define histology:
the study of the structure of cells and tissues microscopically, demonstrating disease processes and the effects on microanatomy
define pathology:
study of diseased tissues and the processes/effects/causes of disease
8 tissue prep techniques:
- fixation
- accession
- grossing
- processing (dehydrate, clear, infiltrate)
- embedding
- paraffin sectioning
- frozen sectioning
- staining
define fixation:
stabilizing proteins and altering tissues to make them resistant to subsequent treatment
what is tissue grossing?
macroscopic review of received tissue specimens
5 parts of tissue grossing:
- all of specimen present
- 3D measurements
- overall appearance
- consistency
- abnormalities
5 steps of tissue processing:
- fixation
- dehydration
- clearing
- infiltration
- embedding
what is H&E staining and what does each stain show?
Hematoxylin (nucleus) and Eosin (cytoplasm)
what is the ischemic time of a tissue specimen?
the time at which blood flow was cut off
what is autolysis?
dissolving of cells by internal enzymatic action
what is desquamation?
sloughing off of epithelial cells from the basement membrane
what is putrefaction?
destruction of cellular components by external bacterial action
what does proper fixation maintain?
proper relationship between cells and extracellular substances: connective fibers (collagen, reticulin, elastin)
5 major groups of fixatives;
- aldehydes
- alcohols
- mercurials
- oxidizing agents
- picrates
8 factors that affect fixation:
- temperature
- size
- time
- fixative choice
- penetration
- tissue storage
- pH
- osmolality
4 effects of temperature on fixation:
- increased speed of fixation BUT also increased speed of autolysis and putrefaction
- heat coagulates proteins
- cold/RT fixation is slower but autolysis and putrefaction are also slowed
- often the first step of processing is formalin at about 37°C
effects of size on fixation:
- thickness
- structural complexity
- density
what is the correct volume of tissue to fixative ratio?
1:20
how does time affect fixation?
- longer interval between ischemia and fixation = more autolysis and putrefaction
- fixatives usually penetrate ~ 1mm/hr
optimal pH for fixation:
6-8
what causes acidity in fixation?
hypoxia
what prevents acidity in fixation?
buffer
what is the result of acidity in formalin fixation?
formalin-heme pigment
what is commercial formalin buffered with?
phosphate
3 effects of fixation being too acid or alkaline:
- artefact
- damage of protein matrix
- damage of delicate structures by hydrolysis
buffers and their role in fixation: (3)
- indifferent salts
- maintain desired pH
- aid in penetration of fixative
effects of iso/hypotonic solutions on fixation:
swelling (water flows in)
effects of hypertonic solutions on fixation:
shrinkage (water flows out)
should fixatives be hypo or hypertonic? why?
slightly hypertonic to prevent swelling and cause only minimal shrinkage (done with buffering salts)
4 physical changes of fixation:
- hardening
- tissue protection
- stain enhancement
- visual differentiation
pros & cons of fixative hardening:
pro: tissues are stronger and easier to slice
con: over-hardening can make tissue brittle and shatter
what does fixation protect tissues from? (3)
future reagents:
1. organic solvents
2. heat
3. acids
what property of fixatives affects staining?
mordanting properties
how does fixation create visual differentiation?
changes the refractive index + allows cells to more easily stain
what is the RI of fresh tissue cut at 5 microns?
1.35
what is the RI of fixed tissue/borosilicate glass?
1.54
effects of fixation on proteins:
affects the side chain reactive groups, either degenerating or precipitating the protein
what are the most important protein side chain groups in fixation? (3)
- Amino (+ve)
- Sulphydryl (-ve)
- Carboxyl (-ve)
what is denaturation of protein?
irreversible alteration of the molecular structure: affects the secondary structure and causes collapse
how is the aqueous component of the cell changed by denaturation?
changes from SOL to GEL
what are the 2 basic elements of tissue?
- structural
- aqueous
key sources of error in poor fixation: (5)
- insufficient reagent
- poor penetration
- fixative not evenly exposed
- insufficient time
- too much time
how does insufficient reagent affect fixation?
incomplete immersion of the tissue in solution, poor fixation
what causes poor fixative penetration?
physical barriers like blood, mucous, fibrous capsules
what causes uneven fixation?
not all sides of tissue exposed (sitting on bottom of container, etc.)
how does time in fixative affect fixation?
too little = unfixed inside
too much = brittle and shrunken
what is the difference between tolerant and intolerant fixatives?
tissues can be left in tolerant fixatives almost indefinitely, tissues in intolerant fixatives must be closely monitored
9 kinds of fixative artefacts:
- protein precipitation
- autolysis/desquamation
- putrefaction
- diffusion/substance loss
- shrinkage
- distortion
- excessive hardening
- formalin pigments
9.mercury pigments
3 effects of putrefaction on end result of tissue slide:
- ill-defined cell borders
- poor nuclear detail
- holes from gas bubbles
effect of diffusion/substance loss (fixation artefact):
glycogen and lipids are lost or diffused, glycogen tends to stream to one side of cell (polarization)
which structures show shrinkage the most? (3)
- muscle
- neurons
- glomeruli
best way to avoid distortion during fixation:
appropriate fixative
best way to prevent excessive hardening:
minimal exposure to intolerant fixatives (monitored exposure)
cause of formalin pigments:
pH is too low-acid degradation of hemoglobin
how to remove formalin pigments: (4)
- picric acid dissolved in ethanol then rinse in water or lithium carbonate to remove yellow colour
- soak tissue in 1% KOH dissolved in 80% ethanol
- soak tissue in 1% NaOH in 100% alcohol
- ammonium hydroxide in 70% alcohol
when do mercury pigments occur?
always when a mercuric fixative is used
how to remove mercury pigments:
iodine followed by Na thiosulfate (hypo)
which fixatives react with nucleic acids?
none
which fixatives are preferred for nucleic acid?
Carnoy’s and acetic alcohol
at what temperatures will formaldehyde react with DNA and RNA?
RNA = 45°C
DNA = 65°C
what is believed to be the method of fixation of nucleic acids?
entrapment of the nucleic acids by the fixed nuclear protein
fixation agents will be either: (2)
- physical (heat/dessication)
- chemical
chemical fixation agents will be either: (2)
- solids in aqueous solution
- liquids (w/ or w/out H2O)
3 methods of fixation:
- heat
- freezing
- chemical
what do coagulating and non-coagulating fixatives have in common? (2)
- irreversible denaturation of proteins
- form a mesh of protein in a continuous phase
difference between coagulating and non-coagulating fixatives:
degree of harshness of protein denaturation
coagulant fixatives are _______ than non-coagulating fixatives
harsher
coagulant fixation is directed at:
proteins
how do coagulant fixatives affect proteins? (4)
- change the protein structure
- strengthen the linkage to prevent breaking
- very closed meshwork of denatured proteins
- meshwork allows for penetration of solutions
coagulant fixatives cause ______ shrinkage than non-coagulant fixatives
more
2 disadvantages of coagulant fixatives:
- may produce artefact
- may compromise cytological details
non-coagulant fixatives form _______________ with proteins. what is the effect?
additive compounds.
create a gel that prevents penetration of subsequent solutions
non-coagulant fixatives are _________ commonly used than coagulant
more
Compound fixatives are _____ commonly used than simple
more
most compound fixatives contain both:
coagulant and non-coagulant fixatives
how are larger specimens fixed?
perfusion: large volumes forcefully flooded into the tissue using a vacuum.
2 methods of causing irreversible protein denaturation:
- additive fixation
- non-additive fixation
how does additive fixation work? (2)
- binds proteins by acting as the link between them, joining to the reactive side groups
- alters the electrical charge on the molecule, thus altering the shape of the tertiary structure
all primary fixing agents are additive except:
ethanol (reacts like non-additive fixative)
how does non-additive fixation work? (2)
- precipitate/coagulate proteins without adding themselves to the structure of the tissue
- dehydration by dissociating bound H2O molecules from tissue protein groups
water loss always occurs in ________ fixation
non-additive
how do non-additive fixatives link proteins? (2)
- removing water brings reactive side groups together allowing linkage
- polymerization
non-additive fixation results in both:
shrinkage and hardening
in terms of composition, fixatives can be: (2)
- simple - one fixing chemical
- compound - more than one fixing chemical
3 categories of compound fixatives:
- micro-anatomical
- cytological
- histochemical
microanatomical fixatives: (3)
- routine
- target overall tissue
- retain anatomy
purpose of cytological fixatives: (2)
- used in instances where intracellular components need to be preserved
- target cellular components (nuclear and cytoplasmic)
histochemcial fixatives are used to:
target particular chemicals in tissues (eg enzymes and antigens)
8 common primary fixatives:
- formaldehyde
- potassium dichromate
- mercuric chloride
- ethanol
- picric acid
- acetic acid
- osmium tetroxide
- glutaraldehyde
formalin is produced by dissolving which gas into which solvent?
formaldehyde into water
what percent formaldehyde is undiluted formalin?
37-40%
what is 10% neutral buffered formalin?
4% solution of formaldehyde + phosphates to maintain neutral pH
formaldehyde is what type of fixative? (4)
- tolerant
- rapid
- non-coagulating
- additive
what is the main reaction site of formaldehyde?
amino group (NH2) found on side chain
what is the cross-linkage formed by formaldehyde and glutaraldehyde called?
methylene bridge
what other groups does formaldehyde react with?
sulfhydryl groups to form cross links with cysteine (amino acid)
which fixative causes the least amount of shrinkage?
formaldehyde
what are the only two fixatives more hardening than formaldehyde?
ethanol and acetone
which fixative allows for the most special staining techniques?
formaldehyde
how does formaldehyde fix glycogen?
indirectly: formaldehyde forms protein meshwork that traps glycogen inside
does formaldehyde cause streaming artefact?
yes
how does formaldehyde react with lipids?
preserves them but does not make them insoluble - lipids will gradually be lost with storage
does formaldehyde fix triglycerides?
no
is formaldehyde a reducing or oxidizing agent?
reducing
what happens if a reducer and oxidizer are combined in a compound fixative?
formation of precipitate and poor fixation