Respiratory pathogens Flashcards

1
Q

What are the types of resp infections?

A
  • Upper Respiratory tracts
  • Lower resp tracts infections
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2
Q

What are upper respiratory tract infections (URTIs)?

A
  • Common, often mild and viral in aetiology
  • Secondary bacterial/fungal infections are common
  • affect lower layers of tissues that cause further symptoms.

Virulence- ability to cause disease

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3
Q

What are some common viral URTIs?

A
  • Rhinovirues (common cold) - >100 types
    – responsible to 80% of URTIs
  • coronaviruses (10-15%) - 7 human types
  • Human parainfluenza viruses (HPIVs); type 1-4 (5-15%)
  • Respiratory syncytial virus (5%)
  • Adenoviruses (<5%)
  • Enteroviruses e.g. , coxsackieviruses, echoviruses (<5%)
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4
Q

What causes Pharyngitis/Tonsillitis?

A
  • Viruses (adenoviruses)
  • Bacteria - strep pyogenes
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5
Q

What is infectious mononucleosis?

A
  • Glandular fever
  • Non aetiological diagnosis - cannot always determine causation
  • Pharyngitis, lymphadenopathy, sore throat. fever and malaise
  • EBV, cytomehalovirus, toxoplasma gondii and HIV
  • presents with atypical mononuclear cells in peripheral blood (larger than usual)
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6
Q

Describe how EBV can undergo latency and reactivation following primary infection

A

Primary infection
* Viral entry/ replication promotes growth transformation of B cells
* Blasting b cell - priming of naiive t cells promotes EBV specific response
* Latent infection = Resting b CELL
* Persistent infection due to viral shedding

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7
Q

What is sinusitis?

A
  • Inflammation of sinuses due to infection
  • usually following viral infection or post-viral bacterial infection
  • Charactetised by facial pain/pressure, nasal obstruction and nasal discharge
  • Post natal drip from sinusitis - irritates larynx and may cause a persistent cough

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8
Q

What are Lower resp tract infections (LRTIs)?

A

e.g :
- bronchitis, bronchiolitis, Tb and pneumonia
- Potentially life threatening
- often viral/bacterial in aetiology

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9
Q

Examples of viral LRTIs

A
  • Influenza viruses (A-C)
  • HPIVs (types 1-3)
  • RSV (A and B)
  • SARS-Cov-2 (COVID-19)
  • Chicken pox pneumonia (variceella zoster virus )
  • Measles virus (MeV)- giant cell pneumonia - immunocompromised children
  • Cytomegalovirus (CMV)- Pneumonia - resp failure - immunocompromised as part of normal flora
  • SARS- Cov-1and MERS- CoV- acute resp distrezss syndrome
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10
Q

What is the structure of influenza A?

A
  • enveloped, spherical, 90-100nm diameter
  • Spike proteins - Haemagglutinin (HA) and Neuraminidase (NA) - different types of influenza dependent on type of spike protein on it
  • Genome - ssRNA- 8 segments - encode 10-14 proteins but have a big impact
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11
Q

What is the epidemiology of influenza A?

A
  • Affects humans, horses, birds , pigs etc
  • Displays extensive xoonosis
  • Natural reservoir in birds
  • Major pandemics
  • Transmission via close contact ; inhalation
  • Facillitates secondary bacterial infections
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12
Q

What are the symptoms of influenza A?

A
  • Flue like illness
  • Respiratory tract symptoms - rhinitis, cough, SOB
  • Systemic symproms, fever , headache, myalgia
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13
Q

What is the pathogenesis of influenza A?

A

Pneumotropic virus - infects cells lining the resp tract down to alveoli
(Cyto)lytic infefction - strips off surface resp epithelium
- removes 2 innate defence mechanisms, mucous secreting cells and cilia
- cytokine production; circulates in blood (not the birus)
- ILA- general defence - ‘flu-like’ symproms
- Interferons- antiviral defence

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14
Q

What are some complications of Influ A?

A

Pneumonia :
- primary viral influenza pneumonia - lymphocyte infiltration (mononuclear)
- Secondary bacterial pneumonia - macrophage/neutrophilic infiltration (polymorphonuclear)
- Cardiovascular complications
- Myocarditis
- CNS complications - encephalitis

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15
Q

State high risk patients of influ A

A

Patients w:
- Lung disease
- CVDs
- Renal disease
- Endocrine disease
- Immunodeficiency
- Liver disease
- Anyone>65 years
- Obese, pregnant women, children

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16
Q

What are influ A antigenic subtypes?

A
  • Classsified on HA and Na - subtyped numerically as HxNy
17
Q

What is antigenic variation?

A

-Antigenic shift:
sudden dramatic change resulting in new subtype

18
Q

What is the prevention and treatment of influ A?

A

Infection monitoring
- Vaccination :
- inactivated
- recombinant
- live attenuated
-Medical treatment
- O2 therapy
- Anti0viral drugs
- Antibiotics
- ITU support

19
Q

What is Resp Syncytial Virus (RSV)?

A
  • Leading cause of LRTIS in infants
  • Also found in elderly parients
  • 33 million cases and 160-190,000 deaths worldwide annually
  • Incubation of 4-5 days and spreads easily
  • No animal reservoir
  • Linked to asthma and bronchiolitis
20
Q

What is the structure of RSV?

A
  • Variants : RSV-A and RSV-B (antigenetically distinct ) - multiple genotype isolates
  • Enveloped. 120-200 nm in diameter. Can be spherical, filamentous and asymetric
21
Q

What is the pathogenesis of RSV?

A
  • Cytopathology linked to viral loaf
  • Block cell cycle processes to maximise viral replication
  • Disrupts viliated epithelial cells
  • Inflammationa dn mucosal oedema
  • Promotes monocyte lunf infiltration
  • Syncytia formation
  • Sloughed cells, immune modulators and mucous leads to obstruction
22
Q

What are symptoms and disease of RSV?

A
  • Causes restriction, obstruction, runny nose, SOB, wheezing, hypoxia, pneumonia and bronchiolitis
  • Developement of asthma linked to RSV infection
  • Mostly causes mild-moderate disease (2-3 % require hospitilisation)
  • Low mortality (0.5%)
  • congenital heart disease
  • congenital lung diseasse
  • immunodeficiency
23
Q

Whata re risk factors of RSV?

A

Age- young individuals and elderly
Gender
Vit D deficiency
Genetic polymorphisms in innate and adaptive immune response (genes,surfactant protein genes and host receptor genes- increase susceptibility)
- Environmental factors :
- exposure to cig smoke, smoking directly afffects airway epithelial cells, including necrosis
- Air pollution
- Time of the year - seasonal infection

24
Q

What is the prevention and treatment of RSV?

A

-Infection monitoring
Vaccination
Medical treatment:
- Hydration and antipyretics
- Oxygen therapy
- RSV neutralising antibodies
- ITU support

25
Q

What is the epidemiology of SARS-COV 2 ?

A

-703 million people infectred
7 milllion deaths

26
Q

What is the structure of SARS-CoV-2?

A
  • Family: Coronaviridae
    -Genus : Betacoronavirus
    Variants : Alpha-Delta and Omicron
    Virion 0 60-140 nm diameter
    Genome: +ve sense ssRNA, linear, 30 Kb
27
Q

Describe the structure of SARS-COV2 protein?

A

Spike - attachment protein
Nucleocapsid- binds genome
Membrane - coordinates assembly and morphology
Envelope- small viropin

28
Q

What are the symptoms and disease of SARS-COV-2?

A
  • Mainly an acute infection ; 80% cases are mild
  • Particular symptoms to look for: high temp, continuous , cough, loss of smell and/or taste
  • Severe- pneumonia and ARDS
  • Particularly dangerous in the elderly and those with co-morbidities
  • LONG COVID?
29
Q

What is the prevention and treatment of SARS-Cov-2?

A

Prevention:
- Isolation
-Face masks
- Social distancing
- Hand hygeine
- Vaccination
- Immunomodulators
- Anti-viral drugs

30
Q

How are resp infections diagnosed?

A
  • Sputum and blood - bacteria/virus
  • Various screening mtehods ; Gram stainign, bacterial culture , ELISA, PCR or sequencing
  • X-ray
  • CRP levels and FBC
  • Pulse oximetry and spirometry