Recombinant DNA technology Flashcards

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1
Q

What is gene cloning?

A

Gene cloning involves isolating a single gene of interest and inserting it into a vector so that it can be copied quickly and its function and structure can be studied.

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2
Q

Where is the gene of interest located?

A

In the host chromosome

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3
Q

How can the gene be isolated?

A

Either using restriction enzymes or PCR

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4
Q

What is a plasmid?

A

A segment of DNA separate from the chromosome capable of replication.

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5
Q

When can you amplify a gene?

A

If the gene has been well studied, and it is under 5 kb, using PCR

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6
Q

If you can’t amplify a gene what happens instead?

A

The Genome can be digested with restriction enzymes, individual segments cloned and then reassembled.

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7
Q

What two DNA molecules are able to act as a cloning vector?

A

Plasmids and Bacteriophages

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8
Q

What do the cloning vehicles do?

A

Enter a host cell and, once inside, replicate to produce multiple copies of itself.

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9
Q

What is a vector?

A

A segment of DNA separate from the chromosome capable of replication.

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10
Q

What are the features needed for any plasmid that’s being used as a cloning vector

A

An origin of replication: Required for independent replication of the plasmid.

A dominant selectable marker: Required to select for bacteria carrying the desired plasmid.

Unique restriction endonuclease cleavage sites: Essential to permit the insertion of foreign DNA fragments into the plasmid.

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11
Q

What are the two enzymes involved in gene cloning?

A

Nucleases and Ligases

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12
Q

What do nucleases do?

A

Cut, shorten or degrade nucleic acids

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13
Q

What do ligases do?

A

Join nucleic acid molecules together

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14
Q

What happens if a molecule is cut more than once

A

It will be broken into two or more fragments and will be useless as a cloning vector.

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15
Q

What are restriction sites?

A

Short palindromic sequences.

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16
Q

What are needed to produce recombinant DNA molecules?

A

Restriction enzymes and DNA ligases

17
Q

What happens during the ligation phase?

A

DNA ligases create phosphodiester bonds between molecules

18
Q

How do you insert the recombinant plasmid into the host cell (transformation)?

A

With CaCl2 treatment and the heat shocking it (42 degrees for two minutes)

19
Q

What does CRISPR stand for?

A

Clustered Regularly Interspaced Short Palindromic Repeats

20
Q

What does the CRISPR system target?

A

DNA or RNA as a way of protecting against viruses and other mobile genetic elements

21
Q

What is CRISPR?

A

A segment of DNA containing short repetitions of base sequences, involved in the defence mechanisms of prokaryotic organisms to viruses.

22
Q

What is non-homologous end joining?

A

The two strands are stuck back together frequently resulting in the introduction of new bases of DNA. This can fix the problem but can also ‘knockout’ the gene.

23
Q

What is Homology Directed Repair?

A

The cell finds a copy of the piece of DNA and uses this to fill the gap.

24
Q

What can CRISPR do?

A

knock out antibiotic resistance in pathogenic bacteria, knock out virulence genes in pathogenic bacteria, knock out HIV/AIDS in human cell lines and animal models