Reactions and Mechanisms in Organic Chemistry Pt. 1 Flashcards
Define chirality
Chiral molecules are molecules which are non-superimposable mirror images of each other
what is required for chirality in molecules and why is it important
- to have chirality a molecule must have a chiral centre, this is often a carbon attached to 4 different groups
- Enantiomers (pairs of chiral molecules) are mirror images but do not necessarily have the same properties
how are bonds out of plane, bonds into plane and partial bonds represented
bonds out of plane of paper = wedge
bond into plane of paper = hashed
partial bond = dashed
why are C-C or C-H bonds not very reactive
- they have a high bond enthalpy and are not strongly polarised
why are C-X bonds more reactive and in what way are they generally reactive
- usually polarised and reactive towards nucleophilic attack
- generally the carbon is attacked as it is delta +ve
- they are much easier to break in a chemical reaction
what is the difference between primary, secondary and tertiary alcohols, give the names for the propane type alcohols for each
primary = -OH attached to a carbon that’s attached to 1 carbon e.g. propan-1-ol
secondary = -OH attached to a carbon that’s attached to 2 carbons e.g., propan-2-ol
tertiary = -OH attached to a carbon that’s attached to 3 carbons e.g. 2 methyl, propan-2-ol, or tert-butanol
what is an ether and what is something to note about them
the functional group of
R1-O-R2
R1 does not have to be the same as R2
e.g. tert-butyl methyl ether
what is an amine and what the difference between primary, secondary, tertiary
amine is the R(x+1)-NH(2-x)
x < 3
- the terms primary/secondary/tertiary refer to the number of hydrogens on the ammonia which have been replaced
- a primary amine is where one hydrogen on the ammonia has been replaced
- a secondary amine is where 2 hydrogens have been replaced
- a tertiary amine is where 3 hydrogens have been replaced
what is an amine and what the difference between primary, secondary, tertiary
amine is the R(x+1)-NH(2-x)
x < 3
- the terms primary/secondary/tertiary refer to the number of hydrogens on the ammonia which have been replaced
- a primary amine is where one hydrogen on the ammonia has been replaced
- a secondary amine is where 2 hydrogens have been replaced
- a tertiary amine is where 3 hydrogens have been replaced
what is the functional group of halides
molecules with the functional group of
R-X
where X is any one of the halogens, F,Cl,Br,I
what are generally considered carbonyl group derivatives
- aldehydes, ketones, carboxylic acids, esters, amides and acid halides
difference between alkene and alkyne
alkene = C=C double bond
alkyne = C=_C triple bond
what is an aldehyde and what is a ketone
- an aldehyde is where a hydrogen is attached to the carbon of the carbonyl bond i.e. R-CHO
- a Ketone is where the carbon of a carbonyl bond is not terminal i.e. RCOR
what is a carboxylic acid and what is an acid halide
- a molecule containing the functional group RCOOH
- an acid halide is a molecule containing the functional group RCOX where X is one of the halides (C is terminal)
what is an ester, how do we name them
a molecule containing the functional group R(1)COOR(2)
Note R(1) and R(2) do not have to be the same
to name do alkyl alkyloate
e.g. methyl ethanoate
this would be where R(1) is ethane based and R(2) is methane based
what is an acid anhydride
R(1)COOCOR(2)
Note: R(1) and R(2) do not have to be the same but usually are
what is an amide
a molecule containing the group
RCONH2 = primary amide
RCONHR(1) = secondary amide
RCONR(1)R(2) = tertiary amide
what is a nitrile
a molecule containing the functional group R-C=_N (triple bond)
what is retrosynthetic analysis and what type of arrow do we used to represent ‘can be made from’
- it’s a process where we look at the target molecule and ask ‘How can I make this’
- we use a fat arrow
what must two or more orbitals be in order to interact
- close in energy
- overlap efficiently
- be of suitable symmetry
what things must we consider when analysing molecular interactions (usually with HAOs)
primarily:
- HOMO/LUMO interactions
- electrostatic interactions
related:
- hardness and softness and hence, whether a reaction is FMO or electrostatics driven
- orbital coefficients
- symmetry
what is the important thing to consider when deciding which HOMO/LUMO interaction is most effective
- relative, not absolute energy levels are important
- this means the interaction with the lowest difference in energy between the HOMO of the nucleophile and LUMO of electrophile is the most effective
what is a curly arrow and where is it used, what are the different types
- curly arrows represent the movement of a single or pair of electrons from a filled orbital (HOMO) to an empty orbital (LUMO)
- the arrow starts with its tail on the source of the moving electrons representing the HOMO
- it finishes with the head of the arrow pointing close to the empty orbital (LUMO)
- a double headed arrow represents a pair of electrons
- a single headed arrow represents a single electron
what is a nucleophile
- an electron pair donor
what is an electrophile
- an electron pair acceptor
what is the order of relative nucleophilicities
-ve charge > lone pair > pi-bond > sigma bond
what is the order of relative electrophilicities
carbocation > empty bonding orbital > pi* orbital > sigma* orbital
What are the two main steps in the mechanism of the nucleophilic addition of a carbonyl
1) nucleophilic addition to the carbonyl group
2) protonation of the anion that results
what are the key differences between the initial molecule and final molecule in the nucleophilic addition of a carbonyl
- the initial molecule has a trigonal planar sp2 carbon
- the final molecule has a tetrahedral sp3 carbon
what causes the nucleophile to attack the carbon of the carbonyl (4 main points)
- the C=O bond has a large dipole, this means on electrostatic attraction alone we would expect the electron rich nucleophile to attack the electron poor carbon
- both the C and O in the carbonyl group are sp2 hybridized, therefore the lone pairs on the oxygen are perpendicular to the pi system and are in sp2 HAOs
- the LUMO is the pi* C=O orbital
- the largest coefficient in the pi* orbital is the carbon, this makes it the most susceptible to attack
why does the nucleophile attack at 107 degrees
- the ideal angle of attack would be >90 degrees to the C=O to give maximum orbital overlap with ‘splayed out pi*’
- and repulsion from the filled pi bonding MO forces the nucleophile to attack at an even more obtuse angle
what are the three types of reaction we consider in the nucleophilic addition of carbonyls
- hydride addition = NaBH4
- organometallic reagents = compounds with C-Metal bonds
- water and alcohols = formation of hydrates, hemiacetals, acetals
what is the thing we need to note about the way hydrides react with a carbonyl
- the nucleophilic attack is NOT by the hydride ion itself
- this is because it ‘prefers’ to act as a base to another molecule forming H2 and X-
- this is because the filled 1s is of a preferred size to interact with the hydrogen atom’s contribution to the sigma* orbital of an H-X bond than the carbon’s contirbution to the C=O pi*
what reagent do we actually use for hydride addition reactions with carbonyls and why
NaBH4, it is a mild source of hydride for the reduction of an aldehyde
it’s a reducing agent
what is the mechanism for the hydride addition to a carbonyl group, give details of where electrons come from / go to etc.
- a electrons from the B-H sigma bond attack the delta +ve carbon, this is the nucleophilic addition to the carbonyl group step
- the pi bond of the C=O group breaks by heterolytic fission giving O a -ve charge
- the O(-) attacks the H of the H-X group e.g. an alcohol or water. And the H-X bond breaks by heterolytic fission, this is the protonation step
NOTE: the boron does have a negative charge but the arrow does not start from the negative charge because there’s no lone pair on the boron so it must start from the B-H bond
H-X is a solvent molecule
what are the HOMO and LUMO in the borohydride/carbonyl addition reaction
HOMO = B-H sigma bonding MO
LUMO = C=O pi* antibonding MO
- these orbitals are well matched so borohydride acts more as a reducing agent and not as a base