rabies and lyssavirus Flashcards

1
Q

stages of rabies

A
- Early
		○ Bite
		○ No symptoms (20-90 days)
	- Symptoms begin
		○ Kills ~ 100% once symptoms begin
		○ Sensation at original bite site
		○ Flu0like symptoms
	- Clinical (furious (80%), paralytic (20%))
		○ Fever, mouth salivates, convulsions
		○ Hydrophobia (unique to rabies)
			§ Fear of water
			§ Can't even drink water
		○ Hallucinations
		○ Hypersexual behaviour
		○ Moments of clarity
Coma, death
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2
Q

Vaccine and treatment

A
  • Vaccine developed by Louis Pasteur and Pierre Roux
    ○ Weaken a virulent rabies virus by aging and drying spinal cords of rabies-infected rabbits
    ○ Tested on 9 year old rabies patient
    • Vaccines improved (inactivated)
      ○ Recombinant vaccines (g protein)
    • At risk individuals
    • Can be applied post-exposure (before symptoms)
      Rabies immunoglobulin, 5 vaccine treatment
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3
Q

Still a problem

A
  • > 55,000 deaths a year
    • Under reported, under-served, poorly resourced regions, rural
    • Vaccine expensive; multiple courses
    • Zoonotic - almost all warm-blooded animals can be infected
    • > 99% human cases come from dogs
    • Almost impossible to completely eliminated due to so many wild-life reservoirs
    • Control: vaccination of dogs, pets
      ○ Wild-life oral baiting (herd immunity)
      Humans are a dead-end host (no human to human transmission)
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4
Q

is rabies caused exclusively by the rabies virus

A

no, other viruses can cause rabies. e.g. Lyssavirus

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5
Q

Does Australia have rabies

A
  • Australian Bar Lyssavirus virus (ABLV)
    • Very similar to rabies virus
    • Zoonotic - flying foxes, bats
    • Treatment
      ○ Same for rabies, rabies immunoglobulin and rabies vaccine protects against lyssavirus
    • Prevention
      Avoid handling bats
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6
Q

Rabies infection of the host

A
  1. Animal bite or scratch (virus in saliva)
    1. Infects muscle (replicates), transmitted to peripheral nerves, then central nervous system
    2. Virus particles transport in along neuronal axons (retrograde = towards cell body) in vesicles using microtubules
    3. When at neuronal cell body, released from vesicle, replicate, assemble new virus particles, then infect next neuron
    4. Travels up spinal cord, leading to brain, causes encephalitis
      Spreads to other organs (e.g. salivary glands)
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7
Q

In the neuron

A
  • Virus endocytosed into the neuron from muscle
    • Gets a ride on the microtubules to cell body
    • Once in cell body gets released out of endosome and can start replicating
    • Transports to the trans-synaptic spread
      Goes to the next neuron
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8
Q

rabies process efficacy

A

Slow process (depending on where bitten) - allows time to vaccinate
- If bitten on foot has to travel a lot further than if bitten on the face
Very little sign of damage to neurons (how does it kill?)
- Very stealthy - very little cytopathic effect
- Inhibits apoptosis
Immunosuppressive strategies (immune evasion)

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9
Q

Lyssaviruses: the stats

A
- RNA 
		○ mutate quickly (no-proofreading), small genome, must make its own RNA polymerase
	- Single strand and negative-sense
		○ Must bring RNA polymerase
	- One (monopartite)
		○ One molecule, non segmented
	- Order - mononegaviruses
		○ Rabies (rhabdoviridae)
		○ Ebola (Filoviridae)
		○ Nipah (Paramyxoviridae)
Envelope - YES
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10
Q

Rabies virion/ particle

A
  • Enveloped
    • Helical (wrapped up by M protein)
    • All 5 proteins in particle (N, P, M, G, L)
    • N binds and covers (encapsulates) RNA genome (nucleoprotein) forming a ribonucleoprotein
      ○ RNA + protein
      G on surface (spikes)
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11
Q

Lyssavirus Genome

A
  • ~11-12 kbp long (average RNA virus long)
    • 5 genes as said above
    • L brings RNA-dependant RNA polymerase to make mRNA
    • Then can make viral proteins (N, P, M, G, L)
      mRNA made by host ribosome (host makes proteins)
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12
Q

Attachment and entry

A
  • The particle itself has the glycoprotein
    ○ Binds to the receptor of the host cell
    • Induces endocytosis
    • Clathrin-coated pits form allowing virus into cell but enclosed in endosome
    • Endosome hooks onto microtubules
    • Transported to cell body
      ○ As the endosomes head towards the cell body the inside of the virus becomes more acidic
      ○ Inducing a conformational change
      ○ The glycoprotein fuses in, brings the membrane from the virus and the membrane from the virus together so they can merge
      ○ Then release out the nucleocapsid
      Contains L protein, M protein and P protein
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13
Q

Synthesis

A
  • Nucleocapsid is a ribonucleoprotein complex
    ○ RNA strand + N, P and L proteins
    1. Nucleocapsid released into cytoplasm
    2. Transcription - make viral mRNA
    3. Translation - make viral proteins
    4. Replication - -ve RNA genome -> +ve RNA antigenome
      Used as a template to make more -ve RNA genome
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14
Q

Transcription

A
  • We need the RNA encapsidated by N protein
    • We need the P protein to act as the intermediate
      ○ Binding to L protein and N protein
      ○ Brings them together
      ○ So polymerase can start
    • The P&L complex starts at 3’ end
    • Transcribing across using a stop start mechanism
      ○ There’s a signal sequence in the RNA telling the complex to disengage and re-engage and make next gene
    • Sometimes the PL complex falls off as it moves across the genome
      ○ Therefore we will always have more of the first proteins (N>P>M>G>L)
      Called the transcriptional gradient - as sometimes the complex fails to re-engage
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15
Q

Translation

A
  • Uses host ribosomes

Has transcriptional gradient of course

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16
Q

Replication

A
  • We need to make +RNA antigenome to be a template to make more -RNA genomes
    • Replication requires new N protein to encapsidate RNA
      ○ If no viral translation = no trigger to replicating the genome (just transcription of mRNA)
    • Replication occurs in “liquid” Negri bodies
      ○ Membrane-less cytoplasmic inclusion caused by rabies virus
      ○ Rabies diagnostic marker
      ○ Site of replication
      ○ Recently shown to be liquid organelles
      ○ Formed by N and P
      Likely most -ve sense RNA viruses use liquid organelles
17
Q

host vs virus mediations

A

Transcription - virus mediated
Translation - host mediated
Replication - virus mediated
No translation = no replication

18
Q

Assembly and release

A
  • Assembly at plasma membrane
    • 3 main components assmebled:
      ○ Nucleocapsid (RNA, N, P, L)
      ○ M (at plasma membrane)
      ○ G (glycosylated - sugar groups added)
    • M mediates assembly, ‘selects’ nucleocapsids (complete, not antigenomes)
    • Triggers budding from host cell
      Gain membrane envelope from host cell as buds from cell
19
Q

summary of lyssavirus infection cycle

A

1.G binds cellular receptor and endocytosed into endosomes.

  1. Low pH of endosome causes conformational change in G, triggering fusion with
    endosomal membrane, releases of viral RNP into cytoplasm (nucleocapsid, N, P, L).
  2. Transcription occurs (requires viral proteins), making mRNA
    • Transcription stop-start gradient causes different levels of viral mRNA.
  3. mRNA translated by ribosomes
  4. G protein translated into ER/secretory pathway
  5. Replication begins when enough N is made, N coats new viral RNA (make
    antigenomes)
  6. Replication occurs in Negri Bodies in the cytoplasm.
8. Antigenomes make new viral genomes.
New genomes used for:
- 8. Transcription
- 6. Make more antigenomes
- 12. Packaging into new particles.

Viral genomes are packaged at the plasma membrane.

11 & 12. M associated with membrane, packages genomes into
particles.

  1. G passed through secretory pathway, glycosylated (9
    and 10) at the plasma membrane packaged on outside of
    particle, and particles released from cell by budding from
    membrane (gain envelope).
20
Q

cytokine affect

A

○ Autocrine = affects same cell

Paracrine = affects different cells

21
Q

Type 1 interferon

A
  • IFNa and IFN b - direct response to infection broad cellular expression and responses
    • Production of IFNa/b is rapid: within hours of infection, declines by 10h
    • IFN binding to IFN receptors leads to synthesis of >1000 cell proteins (IFN stimulated genes = ISGs)
      Many antiviral
22
Q

IFN induction

A
  • Virus releases its content into the cell
    • The PRR, RID-I is inactive
    • It picks up a signal
    • Changes conformation -> signal transduction
    • Phosphorylates IRF3 leading into the nucleus
    • Binds to promotor of type 1 interferon genes
      IFN mRNA is made and secreted out of cell
23
Q

IFN signalling

A
  • IFN binds to cell receptors
    • Causes phosphorylation, that allow stat proteins to bind and form dimer
    • Trafficked into nucleus
      ISGs switches on many mRNA to make antiviral proteins
24
Q

Viruses encode IFN antagonists

A
  • 3 broad strategies
    ○ General inhibition of host gene expression
    ○ Sequestration/masking of PAMPS
    ○ Sequestration/modification of signalling components
    • Often multiple strategies
      IFN antagonists often multifunctional viral proteins
25
Q

Rabies antagonises the IFN response

A
  • At least one protein must act as IFN antagonist
    ○ P protein
    § Stops phosphorylation of IRF3 (inhibits RIG-I signal transduction)
    § Inhibits the STAT proteins from getting into the nucleus
    □ Binds to STAT1/2, preventing nuclear import
    Blocks activation of ISGs
26
Q

Rabies P protein

A
  • N-terminus binds to L protein
    • C-terminal domain (CTD) binds to N protein
    • CTD binds phosphorylated STAT1/2
    • Traffics between nucleus and cytoplasm
      ○ NLS = nuclear localisation sequence (import into nucleus)
      ○ NES = nuclear export sequence (export out of nucleus)
      Can use NLS protein to get into the nucleus and bind to STAT1/2 bringing it out of nucleus
27
Q

Ribosomal leaky scanning

A
  • mRNA with cap and tail
    • Ribosome binds to cap goes along until start codon, translates until tail
    • Kozak sequence = nucleotides around the start codon determine likelihood the ribosome initiates translation at that start codon
      ○ Strong Kozak = will start at the AUG
      ○ Weak Kozak = can skip AUG
    • Sometimes the weak AUG signal will allow the ribosome to keep going until a strong Kozak is seen
      ○ This will make the sequence shorter
      ○ This can make 5 different truncated (shorter) variations of the P proteins with different functions
      E.g. If the L protein is at the start, but the sequence starts later due to weak Kozak the part that binds to L protein wont be made, thus will serve a different function like IFN interference
28
Q

P-protein inhibition of STAT is critical to pathogenesis

A

Nuclear P3 binds STATs in nucleus, prevents binding DNA
Uses microtubules to sequester STAT
- When p protein is activated in attenuated rabies, pathogenesis occurs
- With pathogenic rabies the virus was present
- With attenuated rabies no virus was present
○ If in cells with no IFN the virus was present
§ If IFN was added on top of these cells no virus was present
With attenuated rabies + pathogenic P protein the virus was present

29
Q

RNA have to use clever tricks to increase coding capacity - due to small size

A
  • Each protein has multiple job
    ○ Ribosomal leaky scanning
    ○ 1 RNA -> polyprotein, cleaved (cleaving 2 proteins and combining to make a new protein)
    ○ Multifunctional proteins
    ○ Ribosome frameshifting
    ○ Suppression of termination
    Proteins are regulated (trafficking signals, conformational change, etc.)
30
Q

How to manipulate rabies virus

A
  • Use reverse genetics => DNA copy of RNA virus genome
    ○ Insert DNA copy of RNA into DNA plasmid
    § Easy to manipulate - mutate, insert gene, delete etc.
    • -ve RNA isn’t easy
      ○ We can take virus genome from rabies virus plasmid and put it into a cell
      ○ -ve RNA wont do anything, we need polymerase
      ○ We need N, L, P proteins to make viral mRNA
      We put N plasmid, L plasmid and P plasmid with rabies plasmid into cell
31
Q

Manipulating rabies genome

A
  • Mutant genome
    • Delete gene
      ○ If deleted G gene, it can’t infect new cell
      ○ If we put it on outside, it can infect new cell but can’t create more G
      Insert gene
32
Q

Using rabies for good

A
  • Neurotracer
    ○ Map neural network (trans-synaptic)
    ○ Label virus
    ○ Replicates, therefore labels each neuron similarly
    ○ Low cytopathic effects
    • Vector for vaccines
      ○ Use highly attenuated rabies virus
      ○ Engineered to express immunogenic proteins of other viruses
      ○ Highly immunogenic
    • Pass blood-brain barrier
      ○ Rabies passes BB by binding receptor on nerves (G protein)
      § Found 28-resifue peptide of G when fused to cargo, delivers to brain
      ○ Treat west Nile virus
    • Curing Alzheimer’s?
      ○ Neuroinflammation major factor for disease
      ○ Rabies P is good at impairing immune/inflammatory response
      Can we use P to learn how to target these pathways to tackle these disorders
33
Q

All mononegaviruses have similar genome organisation

A
  • They all have similar proteins in the same sequence that function the same
    If you understand one you can understand them all