Quicksheets Flashcards

1
Q

What does the parasympathetic nervous system do?

A

The parasympathetic nervous system is focused on “rest-and-digest” responses. Think “para” for stop in spanish (parar).

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2
Q

What does the sympathetic nervous system do?

A

The sympathetic branch of the nervous system is focused on “fight-or-flight” responses.

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3
Q

What are the the three regions of the brain? What structures do they contain?

A

Hindbrain: contains the cerebellum, medulla oblongata, and reticullar formation

Midbrain: contains the inferior and superior colliculi

Forebrain: contains the thalamus, hypothalamus, basal ganglia, limbic system, and cerebral cortex

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4
Q

What does each region of the forebrain do?

Thalamus

Hypothalamus

Basal ganglia

Limbic system

A

Thalamus: relay station for sensory information (except olfactory)

Hypothalamus: maintains homeostasis and integrates with the endocrrine system through the hypophyseal portal system that connects it to the anterior pituitary

Basal ganglia: smoothens movements and helps maintain postural stability

Limbic system: contains emotion and memory. Includes septal nuclei (pleasure seeking), amygdala (fear and aggression), hippocampus (memory), and fornix (helps with communication via the limbic system)

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5
Q

List the divisions (lobes) of the cerebral cortex and identify their functions.

A

Frontal: Executive function, impulse control, long-term planning (prefrontal cortex), motor function (primary motor cortex, precentral gyrus), speech production (Broca’s area)

Parietal: Sensation of touch, pressure, temperature, and pain (somatosensory cortex); spatial processing, orientation, and manipulation

Occipital: Visual processing

Temporal: Sound processing (auditory cortex), speech perception (Wernicke’s area), memory, and emotion (limbic system)

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6
Q

Name the seven major neurotransmittters and some of their functions. (Specifically, their influences on behavior)

A

Acetylcholine: Voluntary muscle control, parasympathetic nervous system, attention, alertness

Norepinephrine and Epinephrine: Fight-or-flight responses, wakefulness, alertness

Dopamine: Smooth movements, postural stability

Serotonin: Mood, sleep, eating, dreaming

GABA: Brain “stabilization”, anti-anxyolitic

Endorphins: Natural painkillers

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7
Q

Identify two main theories regarding the development of individual traits.

A

Nature: Genetics.

Nurture: Environment.

Methods for study include family, twin, and adoption studies.

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8
Q

Sensation vs. Perception

A

Sensation: The conversion of physical stimuli into neurological signals

  • Sensory receptors respond to stimuli (afferent) and trigger electrical signals.
  • Sensory neurons transmit information from sensory receptors to the CNS.
  • Sensory stimuli are transmitted to projection areas in the brain, which further analyze sensory input.

Perception: The processing of sensory information to make sense of its significance.

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9
Q

Sensory thresholds and their relation to a law regarding the nature of a changing stimulus and its effects on perception.

A

The minimum stimulus that causes a change in signal transduction.

Weber’s law states that the just-noticable difference for a stimulus is proportional to the magnitude of the initial stimulus. This proportion is constant over most of the range of possible stimuli.

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10
Q

Describe signal detection theory, response bias, and adaptation

A

Signal detection theory is in regard to the effects had by nonsensory factors, such as experiences, motives, and expectations, on perception of stimuli

Response bias: examined using signal detection experiments with the below structure

Adaptation: a decrease in response to a stimulus over time

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11
Q

Describe the structures of the eye, how it detects light, and the visual pathway.

A

The eye is an organ specialized to detect light in the form of photons.

Visual Pathway: retina -> optic nerve -> optic chiasm -> optic tracts -> lateral genitculate nucleus (LGN) of thalamus -> visual radiations -> visual cortex

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12
Q

Describe the process surrounding audition and the auditory pathway. Name some significant structures.

A

The ear transduces sound waves into electrical signals that can be interpreted by the brain.

Cochlea: Detects sound via fluid oscillations after the ossicles mechanically vibrate the oval window, that vibration is reverberated through fluid contained in the cochlea that vibrate hair fibers on the organ of corti.

Utricle and saccule: detect linear acceleration (housed in the vestibules)

Semicircular canals: detect rotational acceleration

Auditory pathway: cochlea -> vestibulocochlear nerve -> medial geniculate nucleus of the thalamus -> auditory cortex

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13
Q

Describe the senses smell, taste, somatosensation, and kinesthetic sense

A

Smell: detection of volatile or aerosolized chemicals by olfactory chemoreceptors (olfactory nerves)

Taste: detection of dissolved compounds by taste buds in papillae

Somatosensation: four touch modalitties (pressure, vibration, pain, and temperature)

Kinesthetic sense (proprioception): ability to tell where one’s body is in space

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14
Q

Describe the the two types of object recognition/visual processing.

A

Bottom-up (data-driven) processing: recognition of objects by parallel processing and feature detection. Slower, but less prone to mistakes.

Top-down (concept-driven) processing: recognition of an object by memories and expectations, but little attention to detail. Faster, but more prone to mistakes.

Gestal principles: ways that the brain can infer missing parts of an image when it is incomplete.

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15
Q

Describe habituation and dishabituation.

A

Habituation: The process of becoming used to a stimulus.

Dishabituation: Occurs when a second stimulus intervenes, causing a resensitization to the original stimulus.

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16
Q

Describe two types of learning.

A

Observational learning: the acquisition of behavior by watching others

Associative learning: pairing together stimuli and responses, or behaviors and consequences (reinforcement)

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17
Q

Describe classical conditioning.

A

Classical conditioning: a form of associative learning in which a neutral stimulus becomes associated with an unconditioned stimulus such that the neutral stimulus alone produces the same response as the unconditioned stimulus; the neutral stimulus thus becomes a conditioned stimulus

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18
Q

Describe operant conditioning.

A

Operant conditioning: a form of associative learning in which the frequency of a behavior is modified using reinforcement (increases behavior) or punishment (decreases behavior)

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19
Q

Describe EEG waves for consciousness and each of the stages of sleep. Additionally describe features of each sleep stage.

A

Sleep disorders including dysomnias (amount or timing of sleeep), such as insomnia, narcolepsy, sleep apnea, and sleep deprivation; and parasomnias (odd behaviors during sleep), such as night terrors and sleepwalking (somnambulism)

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20
Q

Describe the subcomponents of memory and the tasks each is assigned.

A

Facts are stored via semantic networks. Retrieval of information is often based on prriming interconnected nodes of the semantic network.

Recognition information is stronger than recall.

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21
Q

Describe Piaget’s Stages of Cognitive Development.

A
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22
Q

Identify components crucial to Problem-solving and Decision-making

A

Problem-solving techniques include trial-and-error, algorithms, deductive reasoning (deriving conclusions from general rules), and inductive reasoning (deriving generalizations from evidence or examples).

Heuristics are simplified principles used to make decisions (rules of thumb), but biases, intuition, and emotions may contribute to the decision-making process.

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23
Q

Define selective attention and divided attention.

A

Selective attention: allows one to pay attention to a particular stimulus while determining if additional stimuli require attention in the background.

Divided attention: uses automatic processing to pay attention to multiple activities at one time

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24
Q

Identify the three language areas in the brain & what occurs if each is damaged.

A
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25
Detail the four motivation theories.
**Instinct theory:** innate, fixed patterns of behavior in response to stimuli. **Arousal theory:** the state of being awake and reactive to stimuli; aim for optimal level of arousal for a given task (see Yerkes-Dodson law) **Drive reduction theory:** individuals act to relieve internal states of tension **Maslow's hierarchy of needs**: prioritizes needs into five categores (highest -\> lowest) 1. physiological needs 2. safety and security 3. love and belonging 4. self-esteem 5. self-actualization
26
Identify the seven universal emotions and the three theories of emotion, as well as their postulates.
**Seven universal emotions:** happiness, sadness, contempt, fear, surprrise, disgust, anger
27
Define stress, the steps for appraisal, stressors, and the three stages of the **general adaptation syndrome**.
**Stress:** physiological and cognitive response to challenges or life changes **Primary appraisal:** classifying a potential stressor as irrelevant, benign-positive, or stressful **Secondary appraisal**: directed at evaluating whether the organism can cope with the stress, based on harm, threat, and challenge **Stresssor (eustress or distress):** anything that leads to a stress response **General adaptation syndrome:** alarm, resistance, and exhaustion
28
Self-concept and Identity: define the following terms 1. Self-concept 2. Identities 3. Self-esteem 4. Self-efficacy 5. Locus of Control
29
Describe **schizophrenia** and give examples of *positive* and *negative* symptoms.
**Schizophrenia:** psychotic disorder characterized by distortions of rerality and disturbances in content and form of thought, perception, and behavior **Positive:** hallucinations, delusions, and disorganized thought and behavior **Negative:** disturbance of affect and avolition
30
Identify & outline the three depressive disorders.
**Major depressive disorder:** contains at least one major depressive episode **Pervasive depressive disorder**: a depressed mood (either **dysthymia** or major depression) for at least two years **Seasonal affective disorder:** the colloquial name for major depressive disorder with seasonal onset, with depression occurring during winter months
31
Name and describe the bipolar disorders.
**Bipolar I disorder:** contains at least one manic episode **Bipolar II disorder:** contains at least one hypomanic episode and at least one major depressive episode **Cyclothymic disorder:** conatins hypomanic episodes with *dysthymia (persistent mild depression)*
32
Detail Freud's stages of psychosexual development
Based on tensions caused by the **libido**, with failure at any stage leading to **fixation**
33
Describe Erikson's stages of psychosocial development
Stem from conflicts that are the result of decisions we are forced to make about ourselves and the environment around us at each phase of our lives Stages are: 1. trust vs. mistrust 2. autonomy vs. shame and doubt 3. initiative vs. guilt 4. industry vs. inferiority 5. identity vs. role confusion 6. intimacy vs. isolation 7. generativity vs. stagnation 8. integrity vs. despair
34
Describe Kohlberg's theory of moral reasoning development
Describes the approaches of individuals to **resolving moral dilemmas** Six stages are divided into three main phases: **preconventional, conventional, and postconventional**
35
Describe Vygotsky's theory of cultural and biosocial development
Describes development of language, culture, and skills
36
Describe the following anxiety disorders: GAD, specific phobias, social anxiety disorder, agooraphobia, panic disorder, OCD, and body-dismorphic disorder
37
Describe the **psychoanalytic** and **humanistic** perspectives
**Psychoanalytic:** personality results from unconscious urges and desires **Humanistic:** emphasizes internal feelings of healthy individuals as they strive towards happiness and self-realization (Maslow: hierarchy of needs, Rogers: unconditional positive reward)
38
Define **Type and Trait theory** as well as some examples
**Type and trait theory:** personality can be described as a number of identifiable traits that carry characteristic behaviors. Some types: ancient Greek humorrs, Sheldon's **somatotypes**, division into **Types A and B,** and the **Myer-Briggs Type Inventory** * Eysenck's three major traits: psychoticism, extraversion, neuroticism * Trait theorists' Big Five: openness, conscientiousness, extraversion, agreeableness, and neuroticism (OCEAN) * Allport's three basic types of traits: cardinal, central, and secondary
39
Describe personality disorders and the "clusters" associated with them
**Personality disorders:** patterns of inflexible, maladaptive behavior that cause distress or impaired functioning * **Cluster A:** (odd, eccentric, weird): paranoid, schizotypal, schizoid * **Cluster B:** (dramatic, emotional, erratic, wild): antisocial, borderline, histrionic, narcissistic * **Cluster C:** (anxious, fearful, worried): avoidant, dependent, obsessive-compulsive
40
Define social facilitation
**Social facilitation:** tendency to perform at a different level (better or worse) when others are around
41
Define deindividuation
**Deindividuation:** loss of self-awareness in large groups; can lead to drastic changes in behavior
42
Define peer pressure
**Peer pressure:** social influence placed on an individual by other individuals they consider equals
43
Define group polarization
**Group polarization:** tendency towards making decisions in a group that are more extreme then the thoughts of the individual group members
44
Define groupthink
**Groupthink:** tendency to make decisions based on ideas & solutions that arise within the group without considering outside ideas
45
Define assimilation
**Assimilation:** one culture begins to melt into anotherr
46
Define multiculturalism
**Multiculturalism:** encouragement of multiple cultures within a community to enhance diversity
47
Define subculture
**Subculture:** a group that distinguishes itself from the primary culture to which it belongs
48
Define socialization
**Socialization**: the process of developing and spreading norms, customs, and beliefs
49
Define stigma
**Stigma:** extreme disapproval or dislike of a person or group based upon perceived differences
50
Define deviance
**Deviance:** any violation of norms, rules, or expectations within a society
51
Define conformity
**Conformity:** changing beliefs or behaviorrs in order to fit into a group or society
52
Define compliance
**Compliance:** individuals change behavior based on the request of others; techniques for gaining compliance include: *foot-in-the-door, door-in-the-face, lowball,* and *that's-not-all*
53
Define obedience
**Obedience:** change in behavior based on a command from someone seen as an authority figure
54
Define status, role, group, network, and organization
55
Define display rules
**Display rules:** unspoken rules that govern the expression of emotion
56
Define impression management
**Impression management:** maintenance of a public image through various strategies
57
Define dramaturgical apprroach
**Dramaturgical approach:** individuals create images of themselves in the same way that actors perform a role in front of an audience
58
# Define aspects of Social Behavior, including: 1. interpersonal attraction 2. aggression 3. attachment 4. altruism
59
Define attribution theory and its componeents (dispositional, situational, Corrrespondent inference theory, and fundamental attribution error)
**Attribution theory:** focuses on the tendency for individuals to infer the causes of other people's behavior * **Dispositional** causes relate to the features of the person being considered * **Situational** causes relate to featurers of the surroundings or context * **Correspondent inference thteory:** describes attributions made by observing the intentional (especially unexpected) behaviors performed by another person * **Fundamental attribution error:** bias toward making disposittional attributions rather than situational attributions
60
Define self-fulfilling prophecy
**Self-fulfilling prophecy:** the phenomenon of a stereotype creating an expectation of a particular group, which creates conditions that lead to confirmation of this stereotype
61
Define stereotype threat
**Stereotype threat:** a feeling of anxiety about confirming a negative stereoype
62
Define prejudice
**Prejudice:** an irrrrationally based attitude prior to actual expeerience
63
Define ethnocentrism
**Ethnocentrism:** the practice of making judgements about other culturers based on the values and beliefs of one's own culture (*in-group* vs. *out-group).*
64
Describe each of these four theories for social structures: 1. functionalism 2. conflict theory 3. symbolic interactionism 4. social constructionism
65
Define **symbolic** and **material** culture.
**Symbolic culture:** the ideas associated with a cultural group **Material culture:** physical items one associates with a given group (art, clothing, foods, buildings)
66
Define demographic transition
**Demographic transition:** a model used to represent drops in birth and death rates as a result of industrialization
67
# Define social class/stratification based on **socioeconomic status** and these factors: 1. Class 2. Power 3. Social Capital 4. Social Reproduction 5. Poverty
1. **Class:** a category of people with shared socioeceonomic characteristics 2. **Power:** the capacity to influence people through real or perceived rewards and punishments 3. **Social capital:** the investment people make in society in return for economic or collective rewards 4. **Social reproduction:** the passing on of social inequality, especially poverty, to other generations 5. **Poverty:** low SES; in the US, the poverty line is the government's calculation of the minimum income requirements to acquire the minimum necessities of life
68
# Define these four components of epidemiology: 1. **Incidence** 2. **Prevalence** 3. **Morbidity** 4. **Mortality**
69
Name the amino acids that fit into each of the following groups: (i) **Nonpolar, nonaromatic**, (ii) **Aromatic**, (iii) **Polar,** (iv) **Negatively charged**, (v) **Positively charged** Additionally identify the chirality of each amino acid -\> what's the exception?
70
Describe the reaction for that occurs between two amino acids when they're connected. How is this bond broken?
Peptide bond formation is a **condensation** (**dehydration**) reaction with a nucleophilic amino group attaching an electrophilic carbonyl. Peptide bonds are broken by **hydrolysis**.
71
Identify the four levels of protein structure and describe each of their characteristics.
72
Describe **structural** and **binding proteins**.
**Structural proteins:** generally fibrous, include *collagen, elastin, keratin, actin,* and *tubulin.* **Binding proteins:** bind to a specific substrate, either to sequester it in the body or hold its concentration at steady state
73
Describe motor proteins and how they function.
**Motor proteins:** capable of force generation through a conformational change, include *myosin, kinesin,* and *dynein*.
74
Describe **cell adhesion molecules** and **antibodies**.
**Cell adhesion molecules (CAMs):** bind cells to other cells or surfaces, include *cadherins, integrins, and selectins.* **Antibodies** (or **immunoglobulins, Ig**): target a specific antigen, which may be a protein on the surface of a pathogen (invading organism) or a toxin
75
Identify the eight types of enzymes.
76
Specify the two models surrounding enzyme-substrate bindings.
**Lock and key theory**, as well as **induced fit model.**
77
What function do enzymes have? What are their effectts on a reaction? Do they alter free energy or enthalpy?
*Enzymes*, like all catalysts, **lower the activation energy necessary for reactions**. They do not alter the free energy or enthalpy change that accompanies the reactiton nor the final equilibrium position; rather, they change the rate (kinetics) at which equilibrium is reached.
78
Identify the *binding site*, impact on *Km*, and impact on *Vmax* of competitive, noncompetitive, mixed, and uncompetitive enzyme inhibitors.
79
Identify the three types of ion channels.
**Ion channels** can be used for regulating on flow into or out of a cell. There are three main types of ion channels: **ungated channels, voltage-gated channels,** and **ligand-gated channels**.
80
What do **enzyme-linked receptors** do?
**Enzyme-linked receptors** participate in cell signaling through extracellular ligand binding and initiation of second messenger cascades.
81
Describe **G protein-coupled receptors** and how they function.
**G protein-coupled** receptors have a membrane bound protein associated with a trimeric **G protein**. They also initiate second messenger systems.
82
Visualize a **Michealis-Menten** plot.
Note this would be **sigmoidal** for a cooperative enzyme (e.g., Hb).
83
Visualize a **Lineweaver-Burk** plot.
84
Outline the process for carbohydrate classification. How are sugars labeled L- or D-? What is an epimer? An anomer?
85
What three reactions can monosaccharides undergo?
**Oxidation-reduction, esterification**, and **glycoside formation. Glycoside formation** is the basis for building complex carbohydrates and requires the anomeric carbon to link with another sugar. Sugars with a -H replacing an -OH group are termed **deoxy sugars.**
86
List some common **disaccharides** and their formal names.
1. sucrose (glucose-α-1,2-fructose) 2. lactose (galactose-β-1,4-glucose) 3. maltose (glucose-α-1,4-glucose)
87
Describe the three main polysaccharides.
**1. Cellulose:** main structural component of plant cell walls; main source of fiber in the human diet **2. Starches (amylosse and amylopectin):** main energy storage forms for plants **3. Glycogen:** a major energy storage form for animals
88
Visualize the structure of adenosine tri-phosphate. Where are the high-energy bonds?
89
What is a **nucleoside**? What is a **nucleotide**? How do nucleotides differ between **RNA** and **DNA**?
A **nucleoside** contains a five-carbon sugar bound to a nitrogenous base; **nucleotides** are nucleosides with one to three phosphate groups added. Nucleotides in DNA contain **deoxyribose;** in RNA, they contain **ribose.**
90
Describe the Watson-Crick Model
Some core components: * The DNA backbone is composed of alternating sugar and phosphate groups, and is always read **5'** to **3'**. * There are two strands with **antiparallel** polarity, wound into a **double helix.** * **Purines** (A and G) always pair with **pyrimidines** (C, U, and T). In DNA, A pairs with T (*via two H bonds*_)_ and C pairs with G (*via three H bonds*). In RNA, A pairs with U (*via two hydrogen bonds*). * **Chargaff's rules:** purines and pyrimidines are equal in number in a DNA molecule. The amount of A equals the amount of T, and the amount of C equals the amount of G. * DNA strands can be pulled apart (**denatured**) and brought back together (**reannealed**).
91
Describe the storage of DNA in eukaryotic (human) cells. What is transcriptionally *active* and *inactive* DNA called? What are **telomeres**?
In eukaryotes, DNA is wound around **histone proteins** (H2A, H2B, H3, and H4) to form **nucleosomes**, which may be stabilized by another histone protein (H1). DNA and its associated histones make up **chromatin** in the nucleus. * **Heterochromatin** is dense, transcriptionally silent DNA. * **Euchromatin** is less dense, transcriptionally active DNA. * **Telomeres** are the ends of chromosomes -\> They contain a high GC-content to prevent unraveling of the DNA (three hydrogen bonds = strong).
92
What are **centromeres**?
**Centromeres** are located in the middle of chromosomes and hold sister chromatids together until they are separated during anaphase in mitosis. They also contain a high GC-content.
93
Describe each of the steps in DNA replication and the differences between **Prokaryotic Cells** and **Eukaryotic Cells** (Nuclei).
94
How conseervative is DNA replication? What is the role of **DNA polymerase**? In what order is the template strand read? In what order is the new strand synthesized?
DNA replication is **semiconservative;** one old parent strand and one new daughter strand is incorporated into each of the two new DNA molecules. **DNA polymerase** synthesizes new DNA strands, reading the template DNA 3' to 5' and synthesizing the new strand 5' to 3'. * The **leading strand** requires only one primer and can then be synthesized continuously. * The **lagging strand** requires many primers and is synthesized in discrete sections called **Okazaki fragments.**
95
What is **Recombinant DNA**? DNA cloning? What can be done after a bacteria is altered?
**Recombinant DNA:** DNA composed of nucleotides from two different sources. **DNA cloning**: introduces a fragment of DNA into a **vector plasmid**. A **restriction enzyme** (**restriction endonuclease**) cuts both the plasmid and the fragment, leaving them with **sticky ends**, which can bind. These bacterial cells can then replicate via **binary fission** to create a protein of interest or lysed to allow for isolation of the fragment of interest from the vector.
96
What are **DNA Libraries (genomic)** and **cDNA libraries (expression libraries)?**
**Genomic libraries:** these contain large fragments of DNA, including both coding and noncoding regions of the genome. They *cannot* be used to make recombinant proteins or for gene therapy. **cDNA libraries (expression libraries):** these contain smaller fragments of DNA, and only include the exons of genes expressed by the sample tissue. They *can* be used to make recombinant proteins or for gene therapy.
97
What is **PCR** and **hybridization**?
**Hybridization:** the joining of complementary base pair sequences. **Polymerase chain reaction (PCR):** an automated process by which millions of copies of a DNA sequence can be created from a very small sample by hybridization.
98
How can DNA molecules be separated?
**Agarose gel electrophoresis** can be used to separate DNA molecules by size.
99
What is southern blotting? What is it used for?
**Southern blotting** can be used to detect the presence and quantity of various DNA strands in a sample. After electrophoresis, the sample is transferred to a membrane that can be **probed** with single-stranded DNA molecules to look for a sequence of interest.
100
What are **dideoxyribonucleotides?**
DNA sequencing uses **dideoxyribonucleotides** which terminate the DNA chain becausee they lack a 3' -OH group.
101
What is the initiation codon? Termination? What do redundancy and **wobble** mean?
**Initiation:** AUG **Termination:** UAA, UGA, UAG Redundancy and **wobble** (third base in the codon) allow mutations to occur without affecting the protein.
102
List the **point mutations** and their effects.
* **Silent mutations**, with no effect on protein synthesis * **Nonsense (truncation) mutations**, which produce a premature stop codon * **Missense mutations**, which produce a codon that codes for a different amino acid * **Frameshift mutations**, which result from nucleotide addition or deletion and change the reading frame of subsequent codons
103
How is RNA different structurally from DNA?
* Substitution of a ribose sugar for deoxyribose. * Substitution of uracil for thymine. * Single-stranded instead of double-stranded.
104
What are the three major types of RNA in transcription?
**Messenger RNA (mRNA):** carries the message from DNA in the nucleus via transcription of the gene; travels into the cytoplasm to be translated **Transfer RNA (tRNA):** brings in amino acids; recognizes the codon on the mRNA using its anticodon **Ribosomal RNA (rRNA):** makes up much of the ribosome; enzymatically active
105
Outline the steps of transcription.
1. Helicase and topoisomerase unwind DNA double helix. 2. **RNA polymerase II** binds to **TATA box** within promoter region of gene (25 base pairs upstream from first transcribed base). 3. **hnRNA** synthesized from DNA template (antisense) strand.
106
What are the main **posttranscriptional modifications?**
* 7-methylguanylate triphosphate cap added to the 5' end * Polyadenosyl (poly-A) tail added to 3' end * Splicing done by **spliceosome**; introns removed and exons ligated together. **Alternative splicing** combines different exons to acquire different gene products.
107
Outline **translation** (the three stages) and **post*translational* modifications.**
Three stages: **initiation, elongation, and termination.** **Posttranslational modifications:** * folding by **chaperones** * formation of quaternary structure * Cleavage of proteins or signal sequences * Covalent addition of other biomolecules (phosphorylation, carboxylation, glycosylation, prenylation)
108
What are transcription factors? What role do they play in the control of gene expression for **Eukaryotes**?
**Transcription factors** search for promotor and enhancer regions in the DNA. * **Promotors** are within 25 base pairs of the transcription start site. * **Enhancers** are more than 25 base pairs away from the transcription start site.
109
What model describes control of gene expression in **prokaryotes**? What does it say?
Operons (**Jacob-Monod model**) are *inducible* or *repressible* clusters of genes transcribed as a single mRNA.
110
What is **osmotic pressure**?
**Osmotic pressure**, a **colligative** **property,** is the pressure applied to a pure solvent to prevent osmosis and is related to the concentration of the solution. Π = *iM*RI*T*
111
What is **passive transport**? What are its forms?
**Passive transport** does not require ATP because the molecule is moving down its concentration gradient or from an area of higher concentration to an area of lower concentration. * **Simple diffusion** does not require a transporter. Small, nonpolar molecules move from an area of high concentration to an area of low concentration until equilibrium is achieved. * **Osmosis** describes the diffusion of water across a selectively permeable membrane. * **Facilitated diffusion** uses transport proteins to move impermeable solutes across the cell membrane.
112
What is **active transport**? What types are there? How can a cell ingest?
**Active transport** reequires energy in the form of ATP (**primary**) or an existing favorable ion gradient (**secondary**). Secondary active transport can be further classified as **symport** or **antiport**. **Endocytosis** and **exocytosis** are methods of engulfing material into cells or releasing material to the exterior of the cells, both via the cell membrane. **Pinocytosis** is the ingestion of liquid into the cell from vesciles formed from the cell membrane and **phagocytosis** is the ingestion of solid material.
113
Where does glycolysis occur? How many ATP does it yield and from what molecule?
**Glycolysis** occurs in the cytoplasm of all cells, and does not require oxygen. 2 ATP are yielded per *glucose.*
114
Name six important enzymes for glycolysis.
1. **Glucokinase:** present in the pancreatic Beta-islet cells as part of the glucose sensor and is responsive to insulin in the liver 2. **Hexokinase:** traps glucose -\> ? 3. **Phosphofructokinase-1 (PFK-1):** rate-limiting step 4. **Phosphofructokinase-2 (PFK-2):** produces fructose-2,6-bisphosphate, which activates PFK-1 5. **Glyceraldehyde-3-phosphate dehydrogenase:** produces NADH 6. **3-phosphoglycerate kinase** and **pyruvate kinase**: perform **substrate-level** phosphorylation **Gluco/hexokinase, PFK-1,** and **pyruvate kinase** catalyze *irreversible* reactions. The NADH produced in glycolysis is oxidized aerobically by the mitochondrial ETC and anerobically by cytoplasmic lactate dehydrogenase.
115
What does **pyruvate dehydrogenase** do?
**Pyruvate dehydrogenase** converts pyruvate to acetyl-CoA. Stimulated by insulin and inhibited by acetyl-CoA.
116
What is the Citric Acid Cycle? Where dooes it occur? What is its main purpose?
Takes place in the mitochondrial matrix. **Main purpose** is to oxidize acetyl-CoA to CO2 and generate high-energy electron carriers (NADH and FADH2) and GDP for the electron transport chain.
117
Where does the ETC take place? Roughly, how does it function?
ETC takes place on the matrrix-facing surface of the inner mitochondrial membrane. **Rough process:** NADH donates electrons to the chain, which are passed from one complex to the next. Reduction potentials increase down the chain, until the electrons end up on oxygen, which has the highest reduction potential. NADH cannot cross the inner mitochondrial membrane, so must use one of the two shuttle mechanisms to transfer its electrons to energy carriers in the mitochondrial matrix: the **glycerol 3-phosphate shuttle** or the **malate-aspartate shuttle**.
118
What is the **proton-motive force**? Where are protons concentrated? By what mechanism is ATP formed and with what enzyme?
The **proton-motive force** is the electrochemical gradient generated by the ETC across the inner mitochonodrial membrane. The intermembrane space has a higher concentration of protons than the matrix; this gradient stores energy which can be used to form ATP via **chemiosmotic coupling**. **ATP synthase** is the enzyme responsible for generating ATP from ADP and an inorganic phosphate (Pi).
119
What are the yields from the various *carbohydrate metabolism processes?*
**Glycolysis:** 2 NADH and 2 ATP **Pyruvate dehydrogenase:** 1 NADH (2 NADH for each glucose because each glucose forms two pyruvate) **Citric acid cycle:** 3 NADH, 1 FADH2, and 1 GTP (6 NADH, 2 FADH2, and 2 GTP per glucose)
120
How many ATP are formed from each NADH? Each FADH2? What is the total ATP yield per molecule of glucose?
* Each NADH: 2.5 ATP * Each FADH2: 1.5 ATP * 2 ATP from glycolysis + 2 ATP from citric acid cycle + 25 ATP from NADH + 3 ATP from FADH2 = **32 ATP** per glucose. (30-32 is normal)
121
What is **glycogenesis?** What are the main enzymes?
**Glycogenesis** is the building of glycogen using two main enzymes: * **Glycogen synthase,** which creates α-1,4-glycosidic links between glucose molecules. it is activated by insulin in the liver and muscles. * **Branching enzyme,** which moves a block of oligoglucose from one chain and connects it as a branch using an α-1,6-glycosidic link.
122
What is **glycogenolysis**? What are the main enzymes?
**Glycogenolysis** is the breakdown of glycogen using two main enzymes: * **Glycogen phosphorylase,** which removes single glucose 1-phosphate molecules by breaking α-1,4-glycosidic links. In the liver, it is activated by glucagon to prevent low blood sugar. In exercising skeletal muscle, it is activated by epinephrine and AMP to provide glucose for the muscle itself. * **Debranching enzyme,** which moves a block of oligoglucose from one branch and connects it to the chain using an α-1,4-glycosidic link.
123
What is gluconeogenesis and where does it occur? Which three irreversible steps of glycolysis must be bypassed by different enzymes?
Gluconeogensis is the generation of glucose. It occurs in both the cytoplasm and mitochondria, predominantly in the liver. Most of gluconeogenesis is just the reverse of glycolysis, using the same enzymes. **Three steps** must use different enzymes, as they're irreversible from a glycolytic perspective. * Pyruvate carboxylase and PEP carboxykinase bypass pyruvate kinase. * Fructose-1,6-bisphosphatase bypasses phosphofructokinase-1 * Glucose-6-phosphatase bypasses hexokinase/glucokinase
124
What is the **pentose phosphate pathway**?
It occurs in the cytoplasm of most cells and generates **NADPH** and sugars for biosynthesis. The rate-limiting enzyme is **glucose-6-phosphate dehydrogenase,** which is activated by NADP+ and inhibited by NADPH and insulin.
125
What are the three-ish metabolic states and what occurs during them?
1. **Postprandial/well-fed (absorptive) state:** insulin secretion is high and anabolic metabolism prevails. 2. **Postabsorptive state:** insulin secretion decreases while glucagon and catecholamine secretion increases. 3. **Prolonged fasting (starvation):** dramatically increases glucagon and catecholamine secretion. Most tissues rely on fatty acids.
126
Describe the process by which lipids are transported. What is necessary?
**Chylomicrons, VLDL, IDL, LDL, and HDL** each transport lipids.
127
Where is cholesterol synthesized? What is the key enzyme?
Cholesterol may be obtained through dietary sources or through synthesis in the liver. The key enzyme in cholesterol biosynthesis is **HMG-CoA reductase.**
128
What is the only fatty acid that humans can synthesize? Where is it produced and from what?
**Palmitic acid** is the only FA that humans can produce. It is synthesized in the cytoplasm from acetyl-CoA transported out of the mitochondria.
129
Where does FA oxidation occur? By what process? How are FAs transported?
Fatty acid oxidation occurs in the mitochondria, following transport in via the carnitine shuttle, via **β-oxidation.**
130
How are ketone bodies made/degraded? When are they made?
Ketone bodies form via **ketogenesis** during prolonged starvation due to excess acetyl-CoA in the liver. **Ketolysis** regeneerates acetyl-CoA for use as an energy source in peripheral tissues.
131
Where does protein digestion occur? Which parts are used for what?
Protein catabolism occurs primarily in the small intestine. Carbon skeletons of amino acids are used for energy, either through gluconeogenesis or ketone body formation. Amino groups are fed into the **urea cycle** for extraction.
132
Describe tissue-specific metabolic processes for each of the following: ## Footnote **Liver** **Adipose** **Resting muscle** **Active muscle** **Cardiac muscle** **Brain**
**Liver:** maintains blood glucose through glycogenolysis and gluconeogenesis. Processes lipids, cholesterol, bile, urea, and toxins. **Adipose:** stores and releases lipids. **Resting muscle:** conserves carbohydrates as glycogen and uses free fatty acids for fuel. **Active muscle:** may use anaerobic metabolism, oxidative phosphorylation, direct phosphorylation (creatine phosphate), or fatty acid oxidation **Cardiac muscle:** uses fatty acid oxidation **Brain:** uses glucose except in prolonged starvation, when it can use ketolysis
133
What is the nucleus?
**Nucleus:** contains all of the genetic material necessary for replication of the cell
134
What is the mitochondrion?
**Mitochondrion:** location of many metabolic processes (pyruvate dehydrogenase, citric acid cycle, ETC, oxidative phosphorylation, B-oxidation, some of gluconeogenesis, urea cycle) and ATP production
135
What are lysosomes?
**Lysosomes:** membrane-bound structures containing hydrolytic enzymes capable of breaking down many different substrates
136
What is the rough endoplasmic reticulum?
**Rough endoplasmic reticulum:** interconnected membranous structure with ribosomes studding the outside; _site of synthesis of proteins destined for insertion into a membrane or secretion_
137
What is the smooth endoplasmic reticulum?
**Smooth endoplasmic reticulum:** interconnected membranous structure where lipid synthesis and detoxification occurs
138
What is the golgi apparatus?
**Golgi apparatus:** membrane-bound sacs where posttranslational modification of proteins occurs
139
What are peroxisomes?
**Peroxisomes:** organelle containing hydrogen peroxide; site of B-oxidation of very long chain fatty acids
140
What are the steps of cell division?
G1: cell increases its organelles and cytoplasm S: DNA replication G2: same as G1 M: the cell divides in two Mitosis = PMAT (prophase, metaphase, anaphase, telophase) Meiosis = PMAT X 2
141
Describe meiosis I and meiosis II.
**Meiosis I:** * Two pairs of sister chromatids form tetrads during prophase I * Crossing over leads to genetic recombination in prophase I * Homologous chromosomes separate during metaphase I **Meiosis II:** * Essentially identical to mitosis, but no replication * Meiosis occurs in **spermatogenesis** (sperm formation) and **oogenesis** (egg formation)
142
Describe the Fluid Mosaic Model and Membrane Traffic
Three core tenents: 1. Phospholipid bilayer with cholesterol and embedded proteins 2. Exterior: hydrophilic phosphate head groups 3. Interior: hydrophobic fatty acids
143
What are the three core (and non-core fourth) tenents of **cell theory**?
The original form of cell theory consisted of three basic tenets: 1. All living things are composed of cells. 2. The cell is the basic functional unit of life. 3. Cells arise only from preexisting cells. 4. The *fourth* says cells carry genetic information in the form of DNA. This genetic material is passed on from parent to daughter cell.
144
What are the four stages of early embryogenetic development?
1. **Cleavage:** mitotic divisions (cleave -\> without growth) 2. **Implantation:** embryo implants into the endometrium during blastula stage 3. **Gastrulation:** ectoderm, endoderm, and mesoderm form 4. **Neurulation:** germ layers develop a nervous system
145
Identify the liver's seven roles in homeostasis.
1. Gluconeogenesis 2. Processing of nitrogenous wastes (urea) 3. Detoxification of wastes/chemicals/drugs 4. Storage of iron and vitamin A 5. Synthesis of bile and blood proteins 6. B-oxidation of fatty acids to ketones 7. Interconversion of carbohydrates, fats, and amino acids
146
Name the five layers of the skin.
1. Stratum corneum 2. Stratum lucidum 3. Stratum granulosum 4. Stratum spinosum 5. Stratum basalis
147
What is the primary difference between Eukaryotes and Prokaryotes?
Eukaryotes *contain* membrane-bound organelles such as a nucleus, while prokaryotes are are simpler cells that *do not* a nucleus.
148
What are spherical bacteria called? Rod-shaped bacteria? Spiral-shaped bacteria?
* Spherical bacteria are known as **cocci**. * Rod-shaped bacteria are known as **bacilli.** * Spiral-shaped bacteria are known as **spirilli.**
149
In Prokarytotes, the cell wall and cell membrane form the envelope. What cell wall compositions dictate whether a bacteria is **gram-negative** or **gram-positive**?
* **Gram-positive** bacteria have large quantities of peptidoglycan in the cell wall * **Gram-negative** bacteria have much smaller quantities of peptidoglycan with lipopolysaccharides.
150
How do flagella differ in bacteria from eukaryotes?
Prokaryotic flagella contain a basal body that serves as the engine for motion.
151
How do prokaryotes divide?
Prokayotes divide via **binary fission.** The circular chromosome replicates and attaches to the cell wall; the plasma membrane and cell wall grow along the midline, forming daughter cells.
152
Describe the three components of osmoregulation crucial to homeostasis.
**Filtration:** occurs at the glomerulus. Filtrate (fluid and small solutes) passes through. *Passive* **Secretion:** acids, bases, and ions move from interstitial fluid to filtrate. Maintains pH, [K+] and [waste]. *Passive and Active.* **Reabsorption:** essential substances and water flow from filtrate to blood. Enabled by osmolarity gradient and selective permeability of the walls. *Passive and Active.*
153
What does **aldosterone** do? Where is it secreted? How is regulated?
* Stimulates Na+ reabsorption, K+ and H+ secretion, increasing water reabsorption, blood volume, and pressure * Secreted from the **adrenal cortex** * Regulated by the renin-angiotensin-aldosterone system
154
What does ADH (vasopressin) do?
**Vasopressin (ADH)** increases the collecting duct's permeability to water to increase water reabsorption * it is secreted from the posterior pituitary with high [solute] in the blood
155
What do kidneys do? What is their functional unit? Describe it.
**Kidneys** regulate [salt] and [water] in the blood. Their functional unit is the nephron.
156
What is the difference between **direct** and **tropic** hormones?
**Direct** hormones directly stimulate organs; **tropic** hormones stimulate other glands.
157
What are the mechanisms of action for **peptides** and **steroids**? Amino acid-derivative hormones?
**Peptides** act via secondary messengers. **Steroids** act via hormone/receptor binding to DNA. Amino acid-derivative hormones may do either.
158
What does FSH do? Where does it come from?
Stimulates follice maturation; spermatogenesis. Comes from the anterior pituitary.
159
What does lutenizing hormone do? Where does it come from?
Stimulates ovulation (release of follice from ovaries into fallopian tube); testosterone synthesis. Comes from anterior pituitary.
160
What does ACTH do? Where does it come from?
ACTH stimulates the adrenal cortex to make and secrete glucocorticoids. It comes from the anterior pituitary.
161
What does Thyroid-Stimulating Hormone do? Where does it come from?
Stimulates the thyroid to produce thyroid hormones. It comes from the anterior pituitary.
162
What does prolactin do? Where does it come from?
Prolactin stimulates milk production and secretion. It comes from the anterior pituitary.
163
What do endorphins do? Where do they come from?
Endorphins inhibit the perception of pain in the brain. They come from the anterior pituitary.
164
What does growth hormone do? Where does it come from?
Growth hormone stimulates bone and muscle growth/lipolysis. It comes from the anterior pituitary.
165
What does oxytocin do? Where does it come from?
Oxytocin stimulates uterine contractions during labor, milk secretion during lactation. Also promotes in-group/out-group formations and the mother-offspring bond. It comes from the hypothalamus and is stored in the posterior pituitary.
166
What does ADH/vasopressin do? Where does it come from?
ADH/vasopressin stimulates water reabsorptioon in the kidneys. It comes from the hypothalamus and is stored in the posterior pituitary.
167
What do each of the thyroid hormones (T3 and T4) do? Where do they come from?
The thyroid hormones stimulate metabolic activity. They come from the thyroid.
168
What does calcitonin do? Where does it come from?
Calcitonin tones down blood calcium levels. It comes from the parathyroid.
169
What do glucocorticoids do? Where do they come from?
Glucocorticoids increase blood glucose levels and decrease protein synthesis; anti-inflammatory. They come from the adrenal cortex.
170
What do mineralocorticoids do? Where do they come from?
Mineralocorticoids increase water reabsorption in the kidneys. They come from the adrenal cortex.
171
What do epinephrine and norepinephrine do? Where do they come from?
Epinephrine and norepinephrine come from the adrenal medulla, and they function to increase blood glucose levels and heart rate.
172
What does glucagon do? Where does it come from?
Glucagon stimulates conversion of glycogen into glucose in the liver; increases blood glucose. Comes from the Pancreas.
173
What does Insulin do? Where does it come from?
Insulin lowers blood glucose levels and increases glycogen stores. It comes from the pancreas.
174
What does somatostatin do? Where does it come from?
Somatostatin supresses secretion of glucagon and insulin. It comes from the pancreas.
175
What does testosterone do? Where does it come from?
Testosterone maintains male secondary sexual characteristics. It comes from the testes.
176
What does estrogen do? Where does it come from?
Estrogen maintains female secondary sexual characteristics. It comes from the Ovary/placenta.
177
What does progesterone do? Where does it come from?
Progesterone (pro-gestation) promotes growth/maintence of the endometrium. It comes from the Ovary/Placenta.
178
179
What does melatonin do? Where does it come from?
Melatonin regulates sleep-wake cycles. It comes from the pineal gland.
180
What does atrial natiuretic peptide do? Where does it come from?
Atrial natriuretic peptide is involved in osmoregulation and vasodilation. It comes from the heart.
181
What does thymosin do? Where does it come from?
Thymosin stimulates T-cell development. It comes from the thymus.
182
Outline the neuron.
183
Describe ion flow during impulse progogation/action potential.
Depolarization (Na+ rushing into the axon) followed by repolarization (K+ rushing out of the axon) along the nerve axon.
184
Describe the organization of the nervous system.
185
186
Describe the four stages of the menstrual cycle.
1. **Follicular:** FSH causes growth of a follicle. 2. **Ovulation:** LH causes follicle to release egg. 3. **Luteal:** Corpus luteum forms. 4. **Menstruation:** Endometrial lining sheds.
187
What is a sarcomere? What is it composed of?
A sarcomere is sthe contractile unit of the fibers in skeletal muscle. It contains thin actin and thick myosin filaments.
188
Describe the three steps of muscle contraction.
1. **Initiation:** depolarization of a neuron leads to an action potential. 2. **Sarcomere shortening**: 1. Sarcoplasmic reticulum releases Ca2+. 2. Ca2+ binds to troponin on the actin filament. 3. Tropomyosin shifts, exposing myosin-binding sites. 4. Myosin binds, ATPase activity allows myosin to pull thin filaments towards the center of the H zone, and then ATP causes dissociation. 3. **Relaxation:** Ca2+ is pumped back into the sarcoplasmic reticulum.
189
What do osteoblasts and osteoclasts do? What happens during reformation/degradation?
**Osteoblast:** builds bone **Osteoclast:** breaks down bone **Reformation:** inorganic ions are absorbed from the blood for use in bone **Degradation (resorption):** inorganic ions are released into the blood
190
Outline the path of blood through the heart.
Superior and inferior vena cava -\> right atrium -\> tricuspid valve -\> right ventricle -\> pulmonary artery -\> lungs -\> pulmonary vein -\> left atrium -\> mitral valve -\> left ventricle -\> aorta -\> body
191
What is a portal system? Which are the three that exist?
A portal system: blood travels through an extra capillary bed before returning to the heart. * Liver (hepatic), kidney, and brain (hypophyseal)
192
What three structures are crucial to fetal circulation? What do they do?
**Foramen ovule:** connects left and right atria (skip pulmonary step). **Ductus arteriosus:** connects pulmonary artery to aorta. Along with foramen ovale, shunts blood away from lungs. **Ductus venosus:** connects umbilical vein to inferior vena cava, connecting umbilical circulation to central circulation.
193
What is contained in blood plasma?
Blood plasma is an aqueous mix of nutrients, wastes, hormones, blood proteins, gases, and salts
194
Describe the **B****ohr Effect**. What effects do high temperature/pH have on the oxyhemoglobin dissociation curve?
Factors leading to a right shift of the curve: * Increase in temperature. * The Bohr Effect: Decrease in pH, increase in pCO2 * O2 releases to tissues enhanced when H+ allosterically binds to Hb. Increase in pCO2 increases [H+]: * CO2 + H2O \<-\> H2CO3 \<-\> H+ + HCO3-
195
What do platelets do? How?
**Platelets** release thromboplastin, which (along with cofactorrs calcium and vitamin K) converts inactive prothrombin to active thrombin. Thrombin converts fibrinogen into fibrin, which surrounds blood cells to form the clot.
196
What antigens on are located on the surface of which blood cell types? What is the role of Rh factor?
197
Describe the process surrounding gas exchange.
198
What is unique to fetal respiration?
* Fetal hemoglobin has a higher affinity for oxygen than adult hemoglobin. * Gas and nutrient exchanges occur across the placenta.
199
Describe the digestive tract. (i.e., the path food takes all the way through)
200
Describe the production site, function site, and hydrolysis reaction of Salivary anylase (ptyalin).
**Production site:** salivary glands **Function site:** mouth **Hydrolysis reaction:** Starch -\> maltose
201
Describe the production site, function site, and hydrolysis reaction of pancreatic amylase.
**Production site:** Pancreas **Function site:** Small intestine **Hydrolysis reaction:** Starch -\> maltose
202
Describe the production site, function site, and hydrolysis reaction of Maltase
**Production site:** intestinal glands. **Function site:** small intestine **Hydrolysis reaction:** Maltose -\> 2 glucose
203
Describe the production site, function site, and hydrolysis reaction of sucrase.
**Production site:** intestinal glands **Function site:** small intestine **Hydrolysis reaction:** Sucrose -\> glucose, fructose
204
Describe the production site, function site, and hydrolysis reaction of Lactase.
**Production site:** intestinal glands. **Function site:** small intestine. **Hydrolysis reaction:** Lactose -\> glucose, galactose
205
Describe the production site, function site, and function of Pepsin.
**Production site:** gastric glands (chief cells) **Function site:** stomach **Function:** hydrolyzes specific peptide bonds.
206
Describe the production site, function site, and function of Trypsin.
**Production site:** Pancrease **Function site:** Small intestine. **Function:** Hydrolyzes specific peptide bonds, converts chymotrypsinogen (a zymogen) into chymotrypsin
207
Describe the production site, function site, and function of Chymotrypsin.
**Production site:** Pancreas **Function site:** Small intestine **Function:** Hydrolyze specific peptide bonds.
208
Describe the production site, function site, and function of Carboxypeptidases A and B.
**Production site:** Pancreas. **Function site:** Small intestine. **Function:** Hydrolyzes terminal peptide bond at C-Terminus (*it's a carboxy peptidase...*)
209
Describe the production site, function site, and function of Aminopeptidase.
**Production site:** Intestinal glands **Function site:** Small intestine **Function:** Hydrolyzes terminal peptide bond at N-terminus (*it's an amino peptidase...*)
210
Describe the production site, function site, and function of Dipeptidase.
**Production site:** Intestinal glands. **Function site:** Small intestine. **Function:** hydrolyzes pairs of amino acids.
211
Describe the production site, function site, and function of Enteropeptidase.
**Production site:** intestinal glands. **Function site:** small intestine. **Function:** Converts trypsinogen to trypsin.
212
Describe humoral immunity (specific defense).
213
Describe cell-mediated immunity (specific defense).
214
Describe the nonspecific immune response and its components.
Includes skin, passages lined with cilia, macrophages, inflammatory response, and interferons (proteins that help prevent the spread of a virus)
215
Describe the lymphatic system.
* Lymph vessels meet at the thoracic duct in the upper chest and neck, draining in to the left subclavian vein of the cardiovascular system. * Vessels carry **lymph** (excess interstitital fluid), and **lacteals** collect fats by absorbing chylomicrons in the small intestine. * **Lymph nodes** are swellings along the vells with phagocytic cells (leukocytes); they remove foreign particles from lymph.
216
Describe lipid digestion.
1. When chyme (acidic-half-digested fluid which passes from the stomach to small intestine) the duodenum secretes the hormone cholecytoskinin (CCK) into the blood. 2. CCK stimulates the secretion of pancreatic enzymes and bile, and promotes satiety. 3. Bile is made in the liver and emulsifies fat in the small intestine; it's not an enzyme. 4. **Lipase** is an enzyme made in the pancreas that hydrolyzes lipids in the small intestine.
217
Describe the **law of segregation**.
218
Describe the **law of independent assortment.**
219
Describe how the probability of producing a genotype that requires multiple events to occur can be calculated? How about the probability of producing a genotype that can result from one of many events?
220
Describe **genetic mapping**.
221
Describe three patterns of genetic inheritance.
**Autosomal recessive**: skips generations **Autosomal dominant:** appears in every generation **X-linked (sex-linked)**: no male-to-male transmission, and more males affected.
222
Describe the core tenants of the Hardy-Weinberg equilibrium.
223
What is the basic unit of a nucleic acid?
A **nucleotide**: sugar, nitrogenous base, and a phosphate
224
What differs between RNA and DNA?
DNA's sugar: deoxyribose, RNA's sugar: ribose RNA is usually single-stranded: A pairs with U, not T
225
What are the core components of an **operon?** In what organism is it used?
**The operon:** Structural genes: have DNA that codes for protein Operator gene: repressor binding site Promotor gene: RNA polymerase's 1st binding site (note: in Lac, catabolite activating protein must be present) Inducible systems need an inducer for transcription to occur, whilst repressible systems need a corepressor to inhibit transcription.
226
What is a point mutation?
**Point mutation**: one nucleotide is substituted by another; they are silent if the sequence of amino acids doesn't change.
227
What is a **frameshift** mutation?
**Frameshift:** insertions or deletions shift reading frame. Protein doesn't form, or is non-functional.
228
Where is DNA/RNA for a virus? How do they replicate.
DNA/RNA can be single or double stranded (**must be only of one type**) in a protein coat. Acellular structures. Lytic cycle: virus kills the host cell (causing it to lyse with replicates) Lsogenic cycle: virus enters host genome. UV-light can cause lytic cycle later.
229
Describe **transformation** in the context of prokoaryotes.
**Transformation** occurs when a bacterium acquires a piece of genetic material from the environment and integrates that piece of genetic material into the host cell genome. This is a common method by which antibiotic resistance can be acquired.
230
Describe **conjugation** in the context of prokaryotic cells.
**Conjugation** is the bacterial form of mating (sexual reproduction). It involves two cells forming a cytoplasmic bridge between them that allows for the transfer of genetic material. The transfer is one way, from the donor male (+) to the recipient female (-). The bridge is made from appendages called **sex pili** that are found on the donor male. To form the pili, the bacteria must conatin plasmids known as **sex factors.**
231
Describe **transduction** in the context of prokaryotic cells.
**Transduction** occurs when a bacteriophage acquires genetic information from a host cell. Sometimes, when the new virions are assembled in a host cell, some of the genetic material fromo the host cell is packaged along with the viral genetic material. Then, the bacteriophage infects another bacterium, resulting in transfer of bacterial genetic material.
232
What is **atomic weight**?
**Atomic weight:** The weighted average of the masses of the naturally occuring isotopes of an element (proportioned out), in amu per molecule or grams per mole
233
What is avogadro's number?
6.022 \* 10^23
234
What is an isotope?
For a given element, multiple species of atoms with the same number of protons (i.e., **same atomic number**) but with different numbers neutrons (i.e., **different mass numbers**).
235
What does Planck's quantum theory dictate?
**Planck's quantum theory:** Energy emitted as electro-magnetic radiation from matter exists in discrete bundles called quanta.
236
What is Bohr's Model of the Hydrogen Atom?
237
What is an absorption spectrum?
**Absorption spectrum:** Characteristic energy bands where electrons absorb energy.
238
What is the **Heisenberg uncertainty principle?**
**Heisenberg uncertainty principle:** it is impossible to determine with perfect accuracy the momentum and the position of an electron simultaneously. (hence *electron density*)
239
What are the four quantum numbers? What character, symbol, and value do they refer to?
240
What is the **principle quantum number (n)**?
**Principle quantum number (n)**: The larger the integer value of n, the higher the energy level and radius of the electron's orbit. The maximum number of electrons in energy level *n is* 2*n*2.
241
What is the **Azimuthal quantum number**?
**Azumuthal quantum number (l):** Refers to subshells. The four subshells correspoonding to *l* = 0, 1, 2, and 3 are known as *s, p, d,* and *f*, respectively. The maximum number of electrons that can exist within a subshell is given by the equation 4*l* + 2.
242
Describe roughly the relationship between position on the periodic table and (effective charge, ionization energy, electronegativity, and electron affinity) and atomic radius.
243
What is the **octet rule**? What are its exceptions?
244
What is the magnetic quantum number (*ml*)?
**Magnetic quantum number (*ml*):** This specifies the particular orbital within a subshell where an electron is highly likely to be found at a given point in time.
245
What is the **spin quantum number (*ms*)**?
**Spin quantum number (*ms*):** The spin of a particle is its intrinsic angular momentum and is a characteristic of the particle, like its charge.
246
Identify the sequence of orbitals electrons fill (*s, p, d,* and *f*).
247
What is **Hund's rule**?
**Hund's rule**: Within a given subshell, orbitals are filled such that there are a maximum number of half-filled orbitals with parallel spins.
248
What are **valence electrons**?
**Valence electrons**: Electrons of an atom that are in its outer energy shell and that are available for bonding.
249
What is a **lewis structure**? What are the steps for writing one?
250
What is a formal charge?
**Formal charge** is the charge an atom would have if all the electrons in bonds were shared equally.
251
What occurs in a **polar covalent bond**?
252
How can polarity of a molecule be determined?
The **polarity of molecules** depends on the polarity of the constituent bonds and on the shape of the molecule. * Nonpolar bonds -\> nonpolar molecule * Polar bonds -\> **either** polar or nonpolar molecule (see below)
253
Describe the five possible geometric arrangements of electron pairs around a central atom and give each of the angles between electron pairs.
254
What is a complex ion? (coordination compound)
255
How do hydrogen bonds give rise to intermolecular forces?
256
How do dipole-dipole interactions give rise to intermolecular forces?
257
How do dispersion forces give rise to intermolecular forces?
258
What is **experimental determination of rate law?**
The values of *k,* *x,* and *y*, in the rate law equation rate = *k*[A]*x*[B]y must be experimentally determined for a given *reaction* at a given **temperature**. The rate is usually measured as a function of the initiation concentratioons of the reactants, A and B.
259
Describe the efficiency of reactions.
260
What relationship does a **mole** have to carbon?
A **mole** is the amount of a substance that contains the same number of particles that are found in a 12.000 g sample of carbon-12.
261
What is a combustion reaction?
262
What is a combination reaction?
263
What is a decomposition reaction?
264
What is a single-displacement reaction?
265
What is a double-displacement reaction?
266
What is a net ionic equation?
267
What is a neutralization reaction?
268
269
What factors affect reaction rates?
Reactant concentrations, temperature, medium, catalysts
270
What does a **catalyst** do?
Catalysts are unique substances that increase reaction rate without being consumed; they do this by lowering activation energy.
271
What is the law of mass action?
272
Describe some properties of Keq. What if it is \> 1? \< 1? What if it equals 1?
273
What does **Le Chatelier's Principle** say?
**Le Chatlier's Principle:** used to determine the direction in which a reaction at equilibrium will proceed when subjected to a stress, such as a change in concentration, pressure, volume, or temperature. They key is to remember that a system to which these kinds of stresses are applied tends to **change to relieve to the applied stress.**
274
What does the **law of conservation of energy** say?
The **law of** **conservation of energy** dicates that energy can neither be created nor destroyed, but that all thermal, chemical, potential, and kinetic energies are interconvertible.
275
Describe the three types of thermodynamic systems and their characteristics.
276
What do **isothermal** and **adiabatic** mean?
**Isothermal**: temperature of system remains constant **Adiabatic:** no heat exchange occurs
277
What do **isobaric** and **isovolumetric (isochoric)** mean?
**Isobaric:** pressure of system remains constant **Isovolumetric (isochoric)**: volume remains constant
278
What is heat? What happens with heat during **endothermic** and **exothermic** reactions?
**Heat**: the transfer of thermal energy from one object to another **Endothermic**: reactions that absorb heat energy **Exothermic**: reactions that release heat energy
279
What is **constant-volume and constant-pressure calorimetry**? What equation is used?
**Constant-volume and constant-pressure calorimetry** is used to indicate coonditions under which the heat changes are measured. *q = mc(Tf - Ti)* Where q is the heat absorbed or rleased in a given process, m is the mass, c is the specific heat, and deltaT is the change in temperature.
280
What are **states** and **state functions?**
281
What is **enthalpy (H)**?
**Enthalpy**: used to express heat changes at constant pressure
282
What is the Standard heat of formation (∆H°f)? f
**Standard heat of formation (∆H°f):** the enthalpy change that would occurt if onoe mole of a compound was formed directly from its elements in their standard states.
283
What is the Standard heat of reaction (∆H°rxn)?
284
What does **Hess's** **law** say?
**Hess's law**: states that enthalpies of reactions are additive. The reverse of any reaction has an enthalpy of the same magnitude as that of the forward reaction, but of opposite sign.
285
What is **bond dissociation energy**?
286
What is **bond enthalpy**?
287
When are STP and standard conditions used? How are they different and what are they?
STP (273K, 1`atm) is generally used for gas law calculations. Standard conditions (298K, 1 atm, 1*M* concentrations) is used when measuring standard enthalpy, entropy, gibbs free energy, or electromotive force.
288
How many mmHg is 1 atm? Torr? Pa?
289
What is Boyle's law?
290
What is Charle's law?
291
What is Gay-Lussac's law?
292
What is Avagadro's principle?
293
What is the Combined Gas Law?
294
What is the Ideal Gas Law?
295
Describe what happens to real gases when decreasing total volume?
296
What is entropy (S)?
297
What is Gibbs free energy (G)?
298
What is a reaction quotient (Q)?
299
Describe the role of temperature and pressure in influencing the effects had by intermolecular forces on gas dynamics.
300
Describe the **Van der Waals equation of state**.
301
What volume does 1 mole of gas occupy at STP?
22.4 L
302
What is **Dalton's law of partial pressures?**
303
What is the **kinetic molecular theory of gases?**
**The kinetic molecular theory of gases:** an explanation of gaseus molecular behavior based on the mootion of individual molecules.
304
What is the equation for average molecular speeds? For root-mean-square speed?
305
What are colligative properties? How can one calculate their effects on boiling/freezing points?
**Colligative properties**: These are physical properties derived solely from the number of particles present, not the nature of those particles. These properties are usually associated with dilute solutions. Molality (m) must be used, in addition to the van 't Hoff factor (i) for ionic compounds. Solutions with small amounts of solute prefer to keep the solution in its liquid phase, thereby increasing the boiling temperature and decreasing the freezing temperature.
306
Describe **vapor pressure lowering (Raoult's law)**.
307
What is a manifest function of an institution? A latent function?
**Manifest function:** explicit, intended function of an institution **Latent function:** unintended function of an institution
308
How does one calculate percent composition by mass?
(Mass of solute)/(mass of solution) \* 100%
309
How does one calculate molality?
Molality = # of mol of solute / kg of solvent
310
How does one calculate normality?
Normailty = # of gram equivalent weights of solute / liter of solution
311
What is the arrhenius definition of acids and bases?
**Arrhenius definition:** An acid is a species that produces excess H+ (protons) in an aqueous solution, and a base is a species that produces excess OH- (hydroxide ions).
312
What is the Bronsted-Lowry definition of acids and bases?
**Bronsted-Lowry definition:** An acid is a species that donates protons, while a base is a species that accepts protons.
313
What is the lewis definition of acids and bases?
**Lewis definition:** An acid is an electron pair acceptor, and a base is an electron pair donor.
314
What is an **amphoteric species**?
**Amphoteric species:** one that can act either as an acid or a base, depending on its chemical environment.
315
Define galvanic cells. In what direction do electrons flow?
A redox reaction occurring in a galvanic cell has a negative deltaG and is therefore a spontaneous reaction. Galvanic cell reactions supply energy and are used to do work. The energy of these spontaneous reactions can be harnessed by placing the oxidation reduction half-reactions in seperate containers called **half-cells**. The half-cells are then connected by an apparatus that allows for the flow of electrons. Note that a salt bridge prevents buildup of molecules on either side.
316
Describe electrolytic cells.
A redox reaction occuring in an electrolytic cell has a positive deltaG and is therefore nonspontaneous. In electrolysis, electrical energy is required to induce a reaction. The oxidation and reduction half-reactions are usually placed in one container.
317
What is reduction potential and how is it defined?
**Reduction potential** of each species is defined as the tendency of a species to acquire electrons and be reduced. Standard reduction potential, Enot, is smeasured under standard conditions: 25C, 1*M* concentration for each ion in the reaction, a partial presssure of 1 atm for each gas and metals in their pure state.
318
How can the electromotive force (emf or E˚cell) be calculated for a reaction (the difference in potential between two half-cells)?
emf = E˚ red, cathode – E˚ red, anode
319
What does *t*-butyl look like?
320
What does neopentyl look like?
321
What does isopropyl look like?
322
What does *sec*-butyl look like?
323
What does isobutyl look like?
324
Identify the prefix and suffix for: 1. Carboxylic acid 2. Anhydride 3. Ester 4. Amide 5. Aldehyde 6. Ketone 7. Alcohols
325
What is a stereoisomer? What is the difference between conformational and configurational isomers?
326
Describe the bond type, hybridization, and angles of single, double, and triple bonds.
327
Describe some of the differences between SN1 and SN2 reactions. Which occurs in one step, and which in two? Which one is favored in which solvent?
328
What effect can protic solvents have on nucleophiles? Which are the strongest nucleophiles in aprotic solvents? In protic solvents?
329
Define conformational isomers and their characteristics (i.e. group positioning around sigma bond).
330
How are configurational isomers interchanged? What are enantiomers? What are diastereomers?
331
Describe the two key characteristics of alcohols. How can they bee synthesized?
332
What characteristics make for good oxidizing agents?
333
What characteristics make for good reducing agents?
334
What does PCC do in this reaction?
335
What does Jones's reagent, KMnO4 do in this reaction? (Or other alkali dichromate salts, in this case).
336
What does LiAlH4 (or NaBH4 or CaH2) do in this reaction?
337
What can be used as a protecting group for carbonyls?
338
What is a phenol? How acidic is a phenol?
339
What is synthesized when phenols are treated with oxidizing agents? Can they be oxidized further, and if so, to form what?
340
What is the **Q cycle**?
341
Describe an aldol condensation reaction.
342
What approximately is the pKa of carboxylic acids? Why? Where does their boiling point stand in regard to other functional groups?
343
Describe two mechanisms for synthesizing carboxylic acids.
344
What is a lactam?
345
What is a lactone?
346
Rank the following in terms of reactivity: Acyl halides, Amides, COOH, and Anhydrides
347
Describe the following phosphorus-containing compounds and their characteristics: 1. Phospric acid 2. Pyrophosphate 3. Inorganic vs. Organic phosphates.
348
Describe **extraction** and when it is used.
349
Describe **filtration** and when it is used.
350
Describe **chromatography** (thin-layer and column) and when it is used.
351
Describe **distillation** and when it is used. Also describe the following: simple, vacuum, and fractional distillation.
352
What are **recrystallization** and **electrophoresis**? What are they used for?
353
What is **infrared spectroscopy**? Identify the Wavenumber (cm-1) of the main functional groups.
354
What is **UV spectroscopy**?
355
Identify the approximate chemical shift of some functional groups (their protons, specifically) for 1H-NMR.
356
What are the *four* things to look for when analyzing an NMR spectrum?