Proteins And Enzymes Flashcards

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1
Q

What is a protein?

A

Polymers made up from many amino acids joined by peptide bonds

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2
Q

What is an amino acid?

A

The monomers from which proteins are made

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3
Q

What is a peptide bond?

A

The bond between amino acids in the primary structure of all proteins

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4
Q

What is the structure of an amino acid?

A

Carboxyl group (-COOH), amine group (-NH2), R group (variable region) ans a hydrogen all attached to a carbon atom

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5
Q

types of proteins?

A

fibrous (simple rope like structure) and globular (complex tertiary structure)

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6
Q

Proteins

A

The doing molecule
Their shape (tertiary/quaternary structure) determines their function
Their shape is controlled by their internal bonding (mostly between their R groups)
The order/sequence of amino acids (primary structure) controls their shape and therefore their function

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7
Q

How are dipeptides and polypeptides formed?

A

Amino acids are linked by condensation reactions.
A molecule of water is released.
Bonds formed between amino acids = peptide bond.

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8
Q

primary structure

A

The sequence of amino acids in the polypeptide chain

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9
Q

secondary structure

A

The long chains of amino acids fold into regions (within the tertiary structure) with repeating patterns. Peptide bonds and hydrogen bonds

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10
Q

tertiary structure

A

W The final 3D resting shape of the protein. Peptide bonds, hydrogen bonds, ionic bonds (between negative and positive charges on different parts of the molecule, R groups). Disulfide bridges (between 2 cystein amino acids)

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11
Q

quaternary structure

A

The final 3D resting shape of the protein made from more than one polypeptide chain. Peptide bonds, hydrogen bonds, ionic bonds and disulfide bonds.

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12
Q

The biuret test for proteins

A
  1. Make the solution alkaline by adding a few drops of sodium hydroxide solution. Then add copper (II) sulfate solution. DONT HEAT.
  2. If colour changed from pale blue to lilac then a protein is present.
    This is a qualitative test. To make it quantitative you could use a colorimeter.
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13
Q

What are enzymes?

A

Biological catalysts that increase the rate of reaction by lowering the activation energy

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14
Q

What is the active site?

A

The region of an enzyme where a complementary substance can bind to form an enzyme substrate complex

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15
Q

What is a metabolic pathway?

A

Series of enzyme catalysed reactions where the product of one reaction is the reactant in the next reaction e.g respiration

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16
Q

Why does an enzyme substrate complex lower the activation energy?

A

Two substrates need to be joined holding them together which reduces any repulsion between molecules so can bond easily
If enzyme is catalysing a breakdown reaction fitting into active site puts a strain on bonds in the substrate so break up more easily

17
Q

What is the lock and key model?

A

Past theory of enzyme action
Shape of the active site is fixed so does not change shape
Active site is complementary to the substrate before during and after it forms an enzyme substrate complex

18
Q

What is the induced fit model?

A

Modern theory of enzyme
Active site and substrate are not complementary before enzyme substrate complex is formed
Active site changes shape to fit more closely around the substrate to become complementary (induced fit)
Forming an enzyme substrate complex strains the bonds in the substrate causing them to form or break (activation energy is lowered)

19
Q

Notes on enzymes

A

All enzymes are proteins
Enzymes have a specific tertiary structure (their active site is only complementary to one substrate) e.g maltase only hydrolyses maltose
Control all intercellular and extra cellular reactions in organisms

20
Q

How does enzyme specificity work

A

The specific tertiary structure of the active site is complementary to the shape of one substrate forming an enzyme substrate complex

21
Q

When is an enzyme denatured

A

An increase in kinetic energy breaks the hydrogen and ionic bonds between the r groups changing the tertiary structure of the protein.

22
Q

When does mutation occur?

A

Change to the base sequence of DNA changes the base sequence of mRNA changing the primary structure of the protein- change to tertiary structure of protein

23
Q

How do mutation and denaturing lead to a non functional enzyme

A

Changes the shape of the active site. Substrate is no longer complementary so no enzyme substrate complex is formed

24
Q

What does denatured mean?

A

A permanent change to the active site which means no more E-S complexes are formed

25
Q

How can you measure the rate of reaction?

A
  1. How fast the product is made (measure the amount of end product at different times during the experiment)
  2. How fast the substrate is broken down (measure the amount of substrate molecules left at different times during the experiment)
26
Q

Factors affecting the rate of enzyme catalysed reactions.

A
  1. Temperature
  2. PH
  3. Enzyme concentration
  4. Substrate concentration
  5. Inhibitors (competitive and non competitive)
27
Q

How does temperature affect the rate of enzyme catalysed reaction?

A

As temperature increased the molecules vibrate more so more collisions so a higher percentage of collisions have the activation energy so more ES complexes formed.
At the optimum temperature molecules vibrate and break internal bonds (ionic and disulphide bridges)
Changes the shape of the active site so doesn’t form ES complexes. Enzyme is denatured.

28
Q

How does pH affect enzyme activity?

A

enzymes have an optimal pH
If you increase or decrease the pH from the optimum enzyme activity (rate) will decrease
The OH- (alkali) or H+ (acid) ions will interact with/disrupt the hydrogen bonds or ionic bonds.
Changes the shape of the tertiary structure
Changes the shape of the active site
Fewer ES complexes formed
The enzyme is denatured

29
Q

How does enzyme concentration affect the rate of reaction/enzyme activity?

A

As the enzyme concentration increases the rate of reaction increases in a positive correlation because there are more successful collisions between the enzyme and substrate so more enzyme substrate complexes are formed.
If the substrate runs out adding more enzyme will make no difference to the rate of reaction

30
Q

What are competitive inhibitors?

A

Have a similar shape to the substrate so can also bind to the active site so stops the substrate forming an ES complex. The proportion of substrate to competitive inhibitor will affect how much the rate of reaction changes

31
Q

What are non-competitive inhibitors?

A

They bind to the enzyme but NOT at the active site but changes the shape of the active site.
No more ES complexes are formed so changing the concentration of substrate wont make any difference.