proteins Flashcards
urea cycle
- Ornithine ->Citrulline (catalyzed by Carbamoyl phosphate synthetase I ). 2. Citrulline + Aspartate ->Argininosuccinate (catalyzed by Arginonosuccinate synthase) 3. Argininosuccinate ->Arginine (catalyzed by Argininosuccinate lyase)
- Arginine ->Ornithine + Urea (catalyzed by Arginase)
Carbamoyl phosphate synthetase I
initial step in urea cycle. located in mitochondira. Reaction: bicarbonate + ammonia -> carbamoyl phosphate uses 2 of the 3 ATPs in urea cycle. N-acetylglutamate is an allosteric activator of carbamoyl phosphate synthetase I.
N-acetylglutamate
an allosteric activator of carbamoyl phosphate synthetase I. Arginine is an activator of N-acetylglutamate synthase, which catalyzes the following reaction: acetyl CoA + glutamate to N-acetylglutamate
transport of ammonia
Glutamine serves as a means of transport, since it can “hold” two ammonia groups. Glu dehydrogenase serves as a control pt for protein metabolism specifically by controlling the direction of either nitrogen removal or incorperation into amino acids. Most tissues use glutamine synthetase to convert glutamate to glutamine for transport to the liver (to enter the urea cycle). Muscle is different where alanine is used instead of glutamine for transport in the Alanine-Glucose Cycle. This is because in muscle there is a build-up of pyruvate from glycolysis and pyruvate can be converted to alanine for transport to liver (transamination). The liver, in turn, can use the alanine to convert back to pyruvate (transamination) and glucose remade (gluconeogenesis).
Arginine in nerve and muscle function
NO synthase converts arginine -> citrulline to produce NO. In the urea cycle, arginine -> ornithine, which is catalyzed by arginase or enzymes that produce creatine phosphate for energy in muscles.
Ketogenic amino acids
no production of glucose. Lysine and leucine are the ketogenic amino acids since breadown gives Acetyl-CoA (i.e. only 2 carbons).
glucogenic amino acids
produces pyruvate or Kreb Cycle intermediates. Oxaloacetate in Kreb Cycle comes from aspartate transamination
Decarboxylation of branched-chain amino acids
Branched Chain Amino Acids include leucine, valine, and isoleucine. First, these three amino acids are deaminated by branched-chain aminotransferase to produce a-keto acids. Second, they are decarboxylated by branched-chain a-ketoacid dehydrogenase complex. Maple Syrup Urine Disease (MSUD) occurs when this
dehydrogenase complex is deficient and there is consequently a build up of the a-keto acids in urine (“sweet smelling”).
thyroid chemistry
tryrosine is used to make T4 (prohormone), which is converted to T3 (hormone).
thyroid stimulating hormone
Stimulates iodide (I-) uptake and stimulates release of T4,T3.
thyroid peroxidase
Oxidizes iodide (I-) to I2
thryoglobulin
contains tyrosine residues that are iodinated to form T4, T3
thyroxin binding globulin
transports T4, T3
Porphyrin (Heme) Metabolism
are specialized products derived from Gly and TCA intermediate. Porphyrins such as Heme are cyclic molecules made of 4x pyroles primarily produced in liver. Porphyrins bind Fe2+ (iron).
synthesis of porphyrin
- glycine + succinyl CoA -> δ Aminolevulinic acid (ALA) (catalyzed by δ-Aminolevulinate synthase). 2. 2x ALA -> Porphobilinogen (catalyzed by by δ-Aminolevulinate dehydratase)
- Porphobilinogen -> - >-> Protoporphyrin IV (catalyzed by 4 enzymes). 4. Protoporphyrin IX -> Heme (catalyzed by Ferrochelatase)
Prophyrias
diseases in porphyrin synthesis. Lead inhibits δ-Aminolevulinate dehydratase and ferrochelatase, leading to lead poisoning
Porphyrin (Heme) degradation
Reactions Heme -> biliverdin (green) -> bilirubin (red-orange) -> bilirubin diglucuronide (conjugated bilirubin) -> urobilinogen -> stercobilin (brown). Bilirubin is transported in blood via albumin. In liver, bilirubin is conjucated with glucuronic acidbilirubin diglucuronide (or otherwise known as conjugated bilirubin). In intestine, bilirubin diglucuronide is oxidizedstercobilin. Jaundice occurs when bilirubin cannot be processed properly (i.e. hemolytic jaundice occurs when too many RBCs lyse, neonatal jaundice when bilirubin diglucuronide is not produced fast enough by low levels of bilirubin glycuronyltransferase).
sulfur containing amino acids
methionine and cysteine
cysteine
(an unessential amino acid) is unique in that the –SH can form disulfides with another Cys, which is important for structural intergrity of many proteins (especially extracellular proteins).
Glutathione (GSH)
tripeptide that controls redox potential via GSH GSSG, where cysteine is central amino acid that does the redox. thiol acts as redox buffer (“SH buffer”) to maintain proteins in their reduced forms (i.e. intracellular proteins) and regulate activity (i.e. enzymes). Cofactor for several enzymes (i.e. Glutathione transferase, GST). Reduce hydrogen peroxide (H2O2) to water and general protection against ROS (radical oxidizing species).
methionine
an essential amino acid. is unique in that it is used to produce S-adenosylmethionine, which is also an intermediate in the production of cysteine.
S-adenosylmethionine (SAM)
produced in the first step of methionine degradation and converted to S-adenoyslhomocysteine (SAH). SAM is major Carbon donor and a “high energy storage unit” like ATP.
methionine degradation
Met -> SAM -> SAH -> Homocysteine -> Met
Homocysteine -> Met needs THF and vit B12 to transfer back CH3 group
methionine to cysteine conversion
Met -> SAM -> SAH -> Homocysteine -> Cystathionine -> Cysteine
hyperhomocysteinemia
elevated homocysteine cause problems like cardiovascular disease. Results from low levels of folate, B6 and B12. Cysteine is now essential.
homocysteinuria
results from defect in cystationine-n-synthase (CBS) and cannot convert homocysteine to cystathionine (and eventually cysteine). Leads to mental retardation, osteoporosis and vascular disease. Cysteine is now essential. Can treat with vit B6 to force CBS activity.
Cysteinuria
kidney stones due to defective transporter of cysteine (and ornithine, lysine, and arginine) that leads to crystallization in urea, treat with acetazolamide that makes cysteine more soluble.
Tetrahydrofolate (THF)
A cofactor used for transferring carbons. Tetrahydrofolate (THF) is synthesized in bacteria and its precursor, folate, is a vitamin for mammals. The different forms of tetrahydrofolate are interconvertible and serve as donors of one-carbon units in a variety of biosynthetic reactions. The one-carbon group, in any of three oxidation states, is bonded to N-5 or N-10 or to both. The most reduced form of the cofactor carries a methyl group, a more oxidized form carrIes a methylene group, and the most oxidized forms carry a methenyl, formyl, or formimino group.
Trp metabolism
Trp is metabolized to pyruvate or acetyl-CoA. Trp is first hyroxylated by tryptophan hydroxylase using tetrahydrobiopterin (BH4) as a cofactor. Trp is used to produce serotonin (neurotransmitter), melatonin (hormone), and niacin (energy).
Phe and Tyr metabolism
Phe and Tyr are metabolized to fumerate or acetoacetate.
phenylalanine hydroxylase
Phe is hydroxylated by phenylalanine hydroxylase to produce Tyr using BH4 as a cofactor.
Tyrosine hydroxylase
hydroxylates Tyr to produce DOPA using BH4, which is subsequently metabolized to chatecholamines (DOPA, dopamine, norepinephrine, epinephrine) or melanin, whic is a pigment produced as a complex combination of several molecules derived from tyrosine metabolism.
Metabolic diseases in Tyr metabolism
Phenylketonuria (PKU), which is a defect in phenylalanine hydroxylase that leads to build-up of alternative byproducts (phenyllactate, phenylacetate, and phenylpyruvate). Tyrosinemias are defects in the mutli-step tyrosine degradation categorized as types I, II, and III that refer to the particular dysfunctional enzyme involved.
Tetrahydrobiopterin (BH4)
a naturally occurring essential cofactor of the three aromatic amino acid hydroxylase enzymes (Phenylalanine hyroxylase, tyrosine hyroxylase, and tryptophan hydroxylase), used in the degradation of amino acid phenylalanine and in the biosynthesis of the neurotransmitters serotonin (5-hydroxytryptamine, 5-HT), melatonin, dopamine, norepinephrine (noradrenaline), epinephrine (adrenaline), and is a cofactor for the production of nitric oxide (NO) by the nitric oxide synthases. A deficit in tetrahydrobiopterin biosynthesis and/or regeneration can result in phenylketonuria (PKU) from excess L-phenylalanine concentrations or hyperphenylalaninemia (HPA), as well as monoamine and nitric oxide neurotransmitter deficiency or chemical imbalance.
roles of purines and pyrimidines
- The building blocks that make up the nucleic acids (DNA and RNA) which are critical for cell division and gene transcription/translation. 2. The primary energy carriers in the cell in molecules such as ATP and GTP. 3. The foundation for many coenzymes such as CoA, FAD, NAD, NADP. 4. Important in intracellular signaling such as cAMP, cGMP. 5. Carriers for activated intermediates such as UDP-glucose which is directed to glycogen synthesis and CDP-diacylglycerol which is involved in glycerophospholipid synthesis.
nucleoside
a base combined with a pentose sugar.
nucleotide
a base combined with a pentose sugar, which is phosphorylated. Nucleotides contain purine and pyrimidine bases. There are five common ones: guanine and adenine (purines); uracil, thymine, and cytosine (pyrimidines). A, G, C, and T are found in DNA, while A, G, C, and U are found in RNA. Unusual bases are found in places like tRNA and rRNA, but these are primarily post-transcriptional modifications of the 5 common bases. Bases, when covalently linked to ribose sugars and phosphates, become nucleotides.
phosphoribosyl pyrophosphate synthetase (PRPP synthase)
The secondary regulated step in purine and pyrimidine nucleotide synthesis. an enzyme that converts ribose 5-phosphate into phosphoribosyl pyrophosphate (PRPP)
glutamine phosphoribosyl pyrophosphate amidotransferase
PRPP (contains the ribose sugar) and glutamine are used by glutamine phosphoribosyl pyrophosphate amidotransferase to add the first nitrogen to the PRPP. At the start of purine de novo synthesis.
Purine nucleotide synthesis
The pathway involves the addition of several amino acids and CO2 to the growing base as well as tetrahydrofolate and ATP as important elements in the pathway. The first base that is produced by this pathway is inosine mono-phosphate (IMP). IMP is then used to make the GMP and AMP bases by the action of enzymes that act on the IMP. Failure of one of the enzymes involved in AMP synthesis can lead to a form of autism. Feedback loops are a critical mechanism of regulation in purine synthesis. Specifically, IMP, GMP, and AMP inhibit enzymes that act early in the pathway.
Pyrimidine nucleotide synthesis
The atoms that make up the pyrimidine bases come from both amino acid and small molecule sources. Unlike the purines, the pyrimidine base ring is not made on the ribose sugar, but made separately and then the base ring is added to the sugar. The first step in the synthesis of the pyrimidine ring is the primary source of regulation. The enzyme that catalyzes this key step is carbamoyl phosphate synthetase II. This is different from carbamoyl phosphate synthetase I in the urea cycle in that it is in the cytosol, and it is activated by PRPP and inhibited by UTP. The first nucleotide produced by this pathway is uracil mono-phosphate (UMP). To make cytosine, the nucleotides must first be converted to a triphosphate form. Once UMP is converted to UTP, it can be converted to CTP by the action of the CTP synthase enzyme.
Changes in phosphorylation states and conversion of rNDPs to dNDPs
To convert nucleotide monophosphates (NMPs) to the diphosphate (NDP) and triphosphate (NTP) forms, a set of enzymes called kinases are used. The enzymes take phosphate from an ATP donor and transfer it to other nucleotides.
ribonucleotide reductase
converts ribose to deoxyribose, needed for DNA. Ribonucleotide reductase operates on diphosphates (NDPs; ADP, GDP, CDP, and UDP). Once UDP is converted to dUDP, it can then be dephosphorylated to make dUMP, which is then converted to dTMP by thymidylate synthase. Kinases can then convert dTMP to dTDP and dTTP.
regulation of ribonucleotide reductase
Ribonucleotide reductase is regulated by a complex mechanism that ‘senses’ the concentration of dNTPs. The enzyme has a primary regulation site (“on/off” switch) that controls the overall activity of the enzyme, and a substrate specificity site (“dial”). The primary regulation site is active in the presence of ATP, inactive when dATP builds up. The substrate specificity switch is sensitive to the concentrations of individual dNTPs, and as each builds up, the enzyme changes from operating on one NDP, to operating on another. Equal and adequate amounts of each NDP are converted to dNDP (and then to the dNTPs).
Nucleotide degradation
Degradation of purine nucleotides occurs by first removing the base from the sugar, yielding a free base (adenosine or guanine). The free bases are then further broken down to uric acid, which is what is excreted from the body in urine. Failures in this pathway lead to several diseases. Pyrimidines are broken down by first removing the base ring from the ribose, as in purine degradation. However, unlike purine degradation, the base ring is then opened up (the uric acid from purine degradation is a closed ring). Ultimately, the breaking down of the base ring leads to molecules that can be used in other pathways (Succinyl-CoA, Malonyl-CoA, and Acetyl-CoA). These products are water soluble and so do not cause problems like uric acid can.
Salvage pathways of nucleotides
Nucleotides can be made de novo from other molecules in the body, but in addition, they can be made through salvage pathways, in which partially degraded nucleotides are reused. The salvage pathways involve enzymes that take free bases and attach them to ribose sugar in the form of PRPP. Failure of these enzymes (transferases) can lead to disease.
Severe Combined immunodeficiency syndrome
caused by a mutation in the gene encoding adenosine deaminase, an enzyme used in the purine degradation pathway. This leads to a buildup of dATP, which inhibits ribonucleotide reductase, which prevents enough dNTPs from being made. Rapidly proliferating cells (such as those
in the immune system) are affected.
Gout
caused by a buildup of uric acid in the blood. Uric acid is the result of the
purine degradation pathway. This disease can be caused by deficiencies or hyperactivities of some enzymes, and several risk factors (age, diet, etc.) are associated with the disease.
Lesch-Nyhan syndrome
caused by a deficiency in one of the primary enzymes in the purine salvage pathway (HGPRT), leading to higher rates of de novo synthesis of purines. Patients may have gout symptoms, self-mutilating behavior and other severe mental disorders.
Methotrexate and 5-florouracil
targets the thymidylate synthase/folate metabolism cycle (anti cancer)
6-mercaptopurine
inhibits AMP synthesis (anti cancer)
Azidothymidine (AZT)
inhibits viral polymerase (anti HIV)
Cytosine arabinoside (araC)
targets DNA polymerase (anti leukeia)
Acyclovir (ACV)
targets viral DNA polymerase and reverse transcriptase (anti
Herpes simplex virus)
Acivicin
glutamine analog, inhibits nucleotide synthesis (mostly GMP; anti cancer)
Phenylketonuria
Liver phenylalanine hydroxylase (PAH) deficiency. Autosomal recessive inheritance. 1:16,000 live births. Pathophysiology is due to elevated total body phenylalaine. No direct pathologic effect on the liver. Rare variants of biopterin synthesis or recycling (about 1% of severe hyperphenyalaninemia.
Phenylketonuria phenotype
severe: plasma phe greater than 1200 micro moles. moderate: 600-1200. benign: below 600. Mental retardation and autistic behaviors. White matter hyperintensities (pseudoleukodystrophy). seizures.
Dietary therapy for PKU
Restrict dietary protein. Phe tolerance depends on residual enzyme activity. Supplement with phenylalanine-free medical beverage. maternal PKU can lead to microcephaly, low birth weight, mental retardation, and malformations in infants of mothers with poorly controlled PKU.
long term management of PKU
restrict Phe, but do not eliminate it. Provide adequate calories; provide adequate protein, vitamins, minerals (phe-free formula). maintain normal growth and development. treatment for life.
maple syrup urine disease
branched chain ketoacid dehydrogenase (BCKD) deficiency. Autosomal recessive inheritance. Incidence is 1/185,000 births. Enzyme is composed of four subunits and mutations are known in all four genes. p.Y391N substitution in E1α protein is a common foundermutation in the Mennonite population. Mutations in E2 subunit most likely to be thiamine (vitamin B1) responsive.
acute treatment of MSUD
eliminate dietary protein intake. supplement valine and isoleucine. provide adequate non-protein energy source and amino acids that are not BCAA. Avoid hypotonic fluids. Treat cerebral edema if symptoms develop. Hemodialysis maybe.
chronic therapy of MSUD
protein restricted diet supplemented with branched chain amino acid free medical foods. Leucine intake about 400-600 mg per day in severe neonatal forms. then 600-800 after adolescence. supplement valine and isoleucine (rapid depletion with dietary exclusion). Thiamine supplementation in some cases of E2 subunit deficiency. Valine, isoleucine, and their corresponding ketoacids are more readily excreted than leucine and ketoleucine. That explains the usual need of Val and ileu in excess of leu.
tyrosinemia type 1
fumarylacotoacetate hydrolase (FAH) deficiency. Autosomal recessive inheritance. Often due to founder affect (quebecois, finland). 3 presenting forms: early in infancy (1 to 6 months), with liver disease (hepatic failure or cholestatic jaundice or cirrhosis with renal tubulopathy) (As a rule a liver failure presenting in the first 2 weeks of life is NOT due to tyrosinemia type 1); late infancy, presenting with rickets due to renal tubulopathy (Fanconi syndrome) with no obvious liver failure; prophyria like attack at any age (can be presenting sign).
Fanconi syndrome
a disease of the proximal renal tubules of the kidney in which glucose, amino acids, uric acid, phosphate and bicarbonate are passed into the urine, instead of being reabsorbed. Fanconi syndrome affects the proximal tubule, which is the first part of the tubule to process fluid after it is filtered through the glomerulus. It may be inherited, or caused by drugs or heavy metals.
rickets
Rickets is defective mineralization or calcification of bones before epiphyseal closure in immature mammals due to deficiency or impaired metabolism of vitamin D, phosphorus or calcium, potentially leading to fractures and deformity.
Succinylacetone
Succinylacetone, an abnormal metabolite of the tyrosine metabolic pathway, is produced in patients with hereditary tyrosinemia because of a genetic deficiency of fumarylacetoacetase. This metabolite greatly inhibits the activity of ALA dehydratase and accounts for the elevated excretion of ALA in urine in this disease, leading to porphyria like abdominal pain crisis and peripheral neuropathy. Tyrosine is very proximal to the block and is only moderately elevated
cellular effects of tyrosinemia type 1
toxic compounds such as fumarylacetoacetate, maleylacetoacetate, and succinylacetone accumulate. hepatocullular damage occurs leading to cirrhosis, hepatocellular carcinoma, high alpha fetoprotein (unreliable as marker in neonates).
Urine dinitrophenylhydrazine (DNPH) test
DNPH precipitates with branched chain ketoacids.2-hydroxyisoleucine is responsible for the maple syrup urine odor.
Valine: Leucine ratio in MSUD
Normally valine is greater than leucine. During fasting or ketosis, branched chain amino acids may be mobilized from muscle back to liver to support gluconeogenesis but the ratios of three amino acids in the blood remain normal. In MSUD, the valine:leucine ratio is inverted.
Treatment of Tyrosinemia type 1
2-(2-nitro-4-trifluoromethylbenzoyl)-1,3-cyclohexane-dione (NTBC) inhibits 4-hydroxyphenylpyruvic acid dioxygenase, which further increases plasma tyrosine. Decreased production of FAA and succinylacetone may not prevent hepatocellular carcinoma. Phe and Tyr restriction necessary to avoid excessive hypertyrosinemia (risk of keratitis and palmoplantar keratosis). Liver transplant if hepatocellular carcinoma develops
2-(2-nitro-4-trifluoromethylbenzoyl)-1,3-cyclohexane-dione (NTBC)
The mechanism of action of nitisinone involves reversibile inhibition of 4-Hydroxyphenylpyruvate dioxygenase (HPPD),. This is a treatment for patients with Tyrosinemia type 1 as it prevents the formation of maleylacetoacetic acid and fumarylacetoacetic acid, which have the potential to be converted to succinyl acetone, a toxin that damages the liver and kidneys. This causes the symptoms of Tyrosinemia type 1 experienced by untreated patients.
Alkaptonuria
Alkaptonuria is an inherited condition that causes urine to turn black when exposed to air. Ochronosis, a buildup of dark pigment in connective tissues such as cartilage and skin, is also characteristic of the disorder. This blue-black pigmentation usually appears after age 30. People with alkaptonuria typically develop arthritis, particularly in the spine and large joints, beginning in early adulthood. Mutations in the HGD gene cause alkaptonuria. The HGD gene provides instructions for making an enzyme called homogentisate oxidase. This enzyme helps break down the amino acids phenylalanine and tyrosine. As a result, a substance called homogentisic acid, which is produced as phenylalanine and tyrosine are broken down, accumulates in the body.
cystathionine beta synthase deficiency
an increased excretion of the thiol amino acid homocysteine in urine and is characterized by nearsightedness (myopia), dislocation of the lens at the front of the eye, an increased risk of abnormal blood clotting, and brittle bones that are prone to fracture (osteoporosis) or other skeletal abnormalities. Some affected individuals also have developmental delay and learning problems. Eye abnormalities: Ectopia lentis, Myopia, May be an isolated presenting sign in children or adults. Developmental disability and neuropyschiatric symptoms
Cystathionine-β-synthase
It catalyzes the first step of the transsulfuration pathway, from homocysteine to cystathionine.
CBS uses the cofactor pyridoxal-phosphate (PLP) and can be allosterically regulated by effectors such as the ubiquitous cofactor S-adenosyl-L-methionine (adoMet).
Diagnostic evaluation of homocystaturia
Plasma amino acids: Methionine = 180 µM (normal 10–35 µM); Homocystine = 2 µM (normally undetectable); Total homocysteine = 150 µM. Urine amino acids: Homocystine = 20 mmol/mg creatinine; Normally undetectable. Urine organic acids normal (no MMA). Urine cyanide-nitroprusside test positive
Signs of classical untreated homocystinuria
Skeletal malformations: Marfanoid habitus, Osteoporosis, Scoliosis, Most common in B6 non-responsive forms
treatment of homocystinuria
No specific cure has been discovered for homocystinuria; however, many people are treated using high doses of vitamin B6 (also known as pyridoxine). Slightly less than 50% respond to this treatment and need to take supplemental vitamin B6 for the rest of their lives. Those who do not respond require a Low-sulfur diet (especially monitoring methionine), and most will need treatment with trimethylglycine.
Recurrent thromboembolism with homocystinuria
May be a isolated presenting sign in late onset B6 responsive forms. Thromboembolism (venous/arterial) can be presenting sign; also phlebitis, pulmonary embolism, cerebrovascular accident. Environmental triggers: Anesthesia, Catabolism, Smoking, and Oral contraceptives
Classical homocystinuria
Cystathionine β-synthase deficiency. Autosomal recessive inheritance. Incidence = 1/200,000 to 1/400,000 births; Incomplete ascertainment. Cases often missed on newborn screens obtained during the first week of life. 50% of CBS mutations are pyridoxine (vitamin B6) responsive
Homocystinuria treatment
Pyridoxine (B6) challenge: 750 mg orally per day for one week; Monitor plasma methionine, total homocysteine; Hyperhomocysteinemia will normalize in pyridoxine responsive forms. Restrict dietary protein. Supplemented with methionine free medical foods. Oral betaine. Consider supplementation with B12, folate, and/or cysteine
Urea Cycle Disorders (UCD)
The urea cycle rids waste ammonia from the body. It is a scaffold of amino acids that accept ammonia and release urea. In the absence of a functioning urea cycle (primary failure, secondary inhibition, liver failure), ammonia rises and is toxic to the central nervous system. Encephalopathy, coma, irreversible neurologic damage, or death may result. Urea cycle defects can present at any age (check an ammonia level for unexplained vomiting, seizures, progressive obtundation). Newborn screening does not detect all disorders of the urea cycle; always test if there is a clinical concern: plasma ammonia, plasma amino acids, urine orotic acid, urine amino acids
Ammonia (NH3)
It is crucial to identify hyperammonemia early in order to prevent the devastating consequences of markedly elevated levels. Unless an ammonia level is checked, the diagnosis will be missed. May be elevated in: Urea cycle disorders (primary), Organic acidemias, Fatty acid oxidation disorders, Carnitine cycle disorders, Transient hyperammonemia of the newborn (THAN), Liver failure, Asparaginase treatment, Valproate therapy
Ornithine Transcarbamylase (OTC) Deficiency
The most common urea cycle disorder. X-linked. Male hemizygotes with no enzyme activity may not survive the newborn period. 15% of female heterozygotes will have clinical symptoms ranging from mild to severe (dependent on pattern of X-inactivation)
Diagnosis of Ornithine Transcarbamylase (OTC) Deficiency
Plasma amino acids: Low citrulline and Elevated glutamine (>1200 uM). Urine organic acids: Elevated orotic acid. Molecular genetic testing of OTC: Hemizygote for p.T178M mutation, Diagnostic for OTC deficiency
diagnostic testing for urea cycle disorder
Specific disorder may be suspected on basis on biochemical findings, which may be pathognomonic for one disorder (eg. very high ASA in arginosuccinate lyase deficiency). DNA testing may be used for diagnosis and to guide genetic counseling. Diagnosis may require enzyme assay if DNA testing is negative; skin or liver biopsy may be required
Ammonia Scavenging Agents
Intravenous arginine (argininosuccinase deficiency) sodium phenylbutyrate and sodium benzoate (ornithine transcarbamoylase deficiency) are pharmacologic agents commonly used as adjunctive therapy to treat hyperammonemia in patients with urea cycle enzyme deficiencies.[1] Sodium phenylbutyrate and sodium benzoate can serve as alternatives to urea for the excretion of waste nitrogen. phenylbutyrate, which is the prodrug of phenylacetate, conjugates with glutamine to form phenylacetylglutamine, which is excreted by the kidneys. Similarly, sodium benzoate reduces ammonia content in the blood by conjugating with glycine to form hippuric acid, which is rapidly excreted by the kidneys.
treatment of urea cycle disorder
Dietary protein restriction. Ammonia scavenging medications. L-arginine or L-citrulline supplementation (depending on the specific defect). Acute, severe hyperammonemia may require hemodialysis or intravenous scavengers. Consider liver transplantation for patients with recurrent hyperammonemia or brittle disease refractory to medical management.
Glycolipids
Glycolipids are molecules that contain both carbohydrate and lipid components. Glycolipids have roles in cell signaling, cell membranes, and as an energy source. In higher organisms, most glycolipids are glycosphingolipids, but glycoglycerolipids and other types exist. The synthesis, functions, and degradation of glycolipids involve complex pathways involving dozens of substrates, and enzymes, cofactors. They are important in many cell types, especially nervous tissues.
Lysosomes
Lysosomes are single-membrane bound, intracellular organelles found in all mammalian cells except red blood cells. Lysosomes are acidic, hydrolase-rich organelles that are capable of degrading most biological macromolecules. ‘Hydrolases’ refer to enzymes that can function in the acid environment of the lysosome; hydrolases are targeted to the lysosomes by Mannose-6-Phosphates (M6P) on the hydrolases that are recognized by M6P receptors. Lysosomes receive input from both the endocytotic and biosynthetic pathways, which means they can degrade biological macromolecules from extracellular (endocytic) and intracellular (biosynthetic) sources.
Lysosomal Storage Diseases (LSDs)
LSDs are a group of disorders where defects in lysosomal ‘function’ are present and one (or more) biomolecules cannot be properly degraded and/or processed. In most cases, LSDs are due to the absence of one or more lysosomal enzymes. As a result, undigested glyco-lipids and extracellular components that would normally be degraded by lysosomal enzymes accumulate in lysosomes as large inclusions. In most of these conditions, substrate storage is manifested clinically as an increase in the mass of the affected tissues and organs. When the brain is affected, however, as is often the case, the picture is one of neurodegeneration. The different presentations of LSDs is driven in part by which enzyme(s) is defective and what material(s) accumulate in which organ(s).
LSD Inheritance
The majority of LSDs are inherited in an autosomal recessive fashion. Three exceptions that are inherited in X-linked fashion are: Fabry disease (alpha-galactosidase) and Hunter syndrome (iduronate-2-sulfatase)
Key signs of LSD
macrocephaly, cognitive regression, corneal clouding, cherry red spot (Most commonly a retinal finding connected with Tay Sachs disease), macroglossia, sleep apena, hepatosplenomegaly (Can be massive, protuberant belly; typically does not lead to liver function abnormalities), proteinuria (Fabry), dysostosis multiplex (abnormal bony structure on X-rays; Vertebral ‘beaking’, broad bases of metacarpals and phalanges, scoliosis), joint stiffness, short stature
Gaucher Disease
presents with: Hepatosplenomegaly, Aseptic necrosis of the femur, Bone crises, Pancytopenia or thrombocytopenia, Neurological symptoms occur in less frequent sub-types of Gaucher’s disease. Gaucher disease is caused by a deficiency in β-glucocerebrosidase. This leads to an accumulation of glucocerebroside. Gaucher cells are lipid filled macrophages that appear like crumpled paper seen in Gaucher disease. Gaucher disease is the most common lysosomal storage disease. The treatment for Gaucher disease is recombinant glucocerebrosidase.
Fabry Disease
presents with: Peripheral neuropathy of the hands and feet, Angiokeratomas ( benign cutaneous lesion of capillaries, resulting in small marks of red to blue color and characterized by hyperkeratosis), Cardiovascular disease, Renal disease, Patients also have a 20-fold increased risk in stroke. X linked recessive. Fabry disease is caused by a deficiency in α-galactosidase A. This leads to an accumulation of ceramide trihexoside.
Niemann-Pick Disease
presents with: Progressive neurodegeneration, Hepatosplenomegaly, Cherry-red spots on the macula, and Foam cells (lipid filled macrophages). Niemann-Pick Disease is caused by deficiency in sphingomyelinase. This leads to an accumulation of sphingomyelin, with CNS involvement.