proteins Flashcards
urea cycle
- Ornithine ->Citrulline (catalyzed by Carbamoyl phosphate synthetase I ). 2. Citrulline + Aspartate ->Argininosuccinate (catalyzed by Arginonosuccinate synthase) 3. Argininosuccinate ->Arginine (catalyzed by Argininosuccinate lyase)
- Arginine ->Ornithine + Urea (catalyzed by Arginase)
Carbamoyl phosphate synthetase I
initial step in urea cycle. located in mitochondira. Reaction: bicarbonate + ammonia -> carbamoyl phosphate uses 2 of the 3 ATPs in urea cycle. N-acetylglutamate is an allosteric activator of carbamoyl phosphate synthetase I.
N-acetylglutamate
an allosteric activator of carbamoyl phosphate synthetase I. Arginine is an activator of N-acetylglutamate synthase, which catalyzes the following reaction: acetyl CoA + glutamate to N-acetylglutamate
transport of ammonia
Glutamine serves as a means of transport, since it can “hold” two ammonia groups. Glu dehydrogenase serves as a control pt for protein metabolism specifically by controlling the direction of either nitrogen removal or incorperation into amino acids. Most tissues use glutamine synthetase to convert glutamate to glutamine for transport to the liver (to enter the urea cycle). Muscle is different where alanine is used instead of glutamine for transport in the Alanine-Glucose Cycle. This is because in muscle there is a build-up of pyruvate from glycolysis and pyruvate can be converted to alanine for transport to liver (transamination). The liver, in turn, can use the alanine to convert back to pyruvate (transamination) and glucose remade (gluconeogenesis).
Arginine in nerve and muscle function
NO synthase converts arginine -> citrulline to produce NO. In the urea cycle, arginine -> ornithine, which is catalyzed by arginase or enzymes that produce creatine phosphate for energy in muscles.
Ketogenic amino acids
no production of glucose. Lysine and leucine are the ketogenic amino acids since breadown gives Acetyl-CoA (i.e. only 2 carbons).
glucogenic amino acids
produces pyruvate or Kreb Cycle intermediates. Oxaloacetate in Kreb Cycle comes from aspartate transamination
Decarboxylation of branched-chain amino acids
Branched Chain Amino Acids include leucine, valine, and isoleucine. First, these three amino acids are deaminated by branched-chain aminotransferase to produce a-keto acids. Second, they are decarboxylated by branched-chain a-ketoacid dehydrogenase complex. Maple Syrup Urine Disease (MSUD) occurs when this
dehydrogenase complex is deficient and there is consequently a build up of the a-keto acids in urine (“sweet smelling”).
thyroid chemistry
tryrosine is used to make T4 (prohormone), which is converted to T3 (hormone).
thyroid stimulating hormone
Stimulates iodide (I-) uptake and stimulates release of T4,T3.
thyroid peroxidase
Oxidizes iodide (I-) to I2
thryoglobulin
contains tyrosine residues that are iodinated to form T4, T3
thyroxin binding globulin
transports T4, T3
Porphyrin (Heme) Metabolism
are specialized products derived from Gly and TCA intermediate. Porphyrins such as Heme are cyclic molecules made of 4x pyroles primarily produced in liver. Porphyrins bind Fe2+ (iron).
synthesis of porphyrin
- glycine + succinyl CoA -> δ Aminolevulinic acid (ALA) (catalyzed by δ-Aminolevulinate synthase). 2. 2x ALA -> Porphobilinogen (catalyzed by by δ-Aminolevulinate dehydratase)
- Porphobilinogen -> - >-> Protoporphyrin IV (catalyzed by 4 enzymes). 4. Protoporphyrin IX -> Heme (catalyzed by Ferrochelatase)
Prophyrias
diseases in porphyrin synthesis. Lead inhibits δ-Aminolevulinate dehydratase and ferrochelatase, leading to lead poisoning
Porphyrin (Heme) degradation
Reactions Heme -> biliverdin (green) -> bilirubin (red-orange) -> bilirubin diglucuronide (conjugated bilirubin) -> urobilinogen -> stercobilin (brown). Bilirubin is transported in blood via albumin. In liver, bilirubin is conjucated with glucuronic acidbilirubin diglucuronide (or otherwise known as conjugated bilirubin). In intestine, bilirubin diglucuronide is oxidizedstercobilin. Jaundice occurs when bilirubin cannot be processed properly (i.e. hemolytic jaundice occurs when too many RBCs lyse, neonatal jaundice when bilirubin diglucuronide is not produced fast enough by low levels of bilirubin glycuronyltransferase).
sulfur containing amino acids
methionine and cysteine
cysteine
(an unessential amino acid) is unique in that the –SH can form disulfides with another Cys, which is important for structural intergrity of many proteins (especially extracellular proteins).
Glutathione (GSH)
tripeptide that controls redox potential via GSH GSSG, where cysteine is central amino acid that does the redox. thiol acts as redox buffer (“SH buffer”) to maintain proteins in their reduced forms (i.e. intracellular proteins) and regulate activity (i.e. enzymes). Cofactor for several enzymes (i.e. Glutathione transferase, GST). Reduce hydrogen peroxide (H2O2) to water and general protection against ROS (radical oxidizing species).
methionine
an essential amino acid. is unique in that it is used to produce S-adenosylmethionine, which is also an intermediate in the production of cysteine.
S-adenosylmethionine (SAM)
produced in the first step of methionine degradation and converted to S-adenoyslhomocysteine (SAH). SAM is major Carbon donor and a “high energy storage unit” like ATP.
methionine degradation
Met -> SAM -> SAH -> Homocysteine -> Met
Homocysteine -> Met needs THF and vit B12 to transfer back CH3 group
methionine to cysteine conversion
Met -> SAM -> SAH -> Homocysteine -> Cystathionine -> Cysteine