Proteins Flashcards
What determines how a protein folds
Sequence of amino acids
What determines the function of a protein
Its structure (location of amino acid side chains)
What is the central dogma of molecular biology
DNA -> RNA -> Protein
What is a protein
Non branching polymer that form macromolecules about 50-100 A in size
How is protein structure determined
Protein crystallography, cryo-electron microscopy, NMR spectroscopy
How is the interior cell environment described
Very crowded
Provide examples of proteins involved in immune defence
HIV protease, antibodies, SARS-CoV-2
Provide examples of proteins involved in digestion and metabolism
Insulin, trypsin, amylase, alcohol dehydrogenase, hexokinase, ATP synthase
Provide examples of proteins involved in DNA and RNA replication
Primase, ligase, polymerase, etc
Provide examples of proteins involved in oxygen transort
Haemoglobin
What is the alpha carbon
Chiral carbon of amino acid
What is the C’ carbon
Carboxy carbon of amino acid
Which stereoisomer of amino acids is favoured
L (written as CORN when drawn out)
How are amino acids categorised
Non polar, polar charged (acidic: deprotonated, and basic: protonated), polar uncharged
What’s special about Glycine
Achiral, too flexible, helix breaker, common in turns
What’s special about Proline
Too rigid, helix breaker, common in turns
(Side chain binds to amino group)
Why are charged side chains on the exterior of proteins
Costs energy to bury charges, hydrophilic
What does E6V variant mean
Glutamate has been replaced by a valine at position 6 in the amino acid sequence
What is pKa of an ionisable group on an amino acid
pH at which the group is 50% ionised
What is the pI of an amino acid
The pH at which the net charge on an amino acid is 0
What are some examples of post translational modifications to amino acids
Disulfide bonds (cysteine + cysteine), phosphorylation, hydroxylation, carboxylation, metal binding, iodination, glycosylation
What is phosphorylation used for
Control enzyme activity: turn enzyme on/off, up/down
What is hydroxylation used for
Needed to prevent connective tissue diseases and scurvy, often proline and lysine involved
What is carboxylation used for
Needed for blood clotting, often glutamate involved