Protein & Enzyme (Protein structure, Role of Protein, Denaturation, Enzymes, Factors affecting Enzymes, Inhibitors) Flashcards

1
Q

Plasma Membrane

A

The plasma membrane is a phospholipid bilayer (two layers of phospholipids)
- Keeps the cytoplasm/cytosol of the cell and all the organelles contained;
- Controls the movement of water, ions, gasses, and other substances into and out of the cell.

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2
Q

What does the Plasma Membrane consist of?

A

Extracellular, Intracellular, Phospholipid bilayer, Hydrophobic tail (water fearing), hydrophilic head (water loving).

The membrane is SEMI-PERMEABLE and SELECTIVELY PERMEABLE. This means that small molecules that pass through the membrane, but others cannot. Protein channels and carrier proteins, help to control which molecules move into and out of the cell.

The plasma membrane includes a lot of different proteins and other molecules.

Plasma membrane also consists of
- Cholesterol,
- Protein channels/pump
- Glycoproteins
- Oligosaccharides

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3
Q

Plasma membrane - Cholesterol

A

Helps to stabilise the cell membrane, and reduce it’s permeability to water solute molecules

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4
Q

Plasma membrane - Protein channels/pump

A

These allow the movement of specific molecules in/out of the cell

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5
Q

Plasma Membrane - Glycoproteins

A

Often these are the receptors for bigger molecules and trigger cellular responses when these molecules are detected

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6
Q

Plasma Membrane - Oligosaccharides

A

Involved in recognising ‘self’ cells, and signalling between cells

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7
Q

What is 4 differences between Plant cells & Animal cells?

A
  1. Plant cells have a cellulose cell wall outside the cell membrane. Animal cells have NO cell wall.
  2. Plant cells have a CELL MEMBRANE. Animal cells DO NOT have chloroplasts.
  3. Plant cells have a cytoplasm. Animal cells only have small vacuoles.
  4. Plant cells have a nucleus
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8
Q

What does the plant cell consist of? (Eight)

A

Chlorophyll, Vacuole, Grana, Thylakoid, Stroma, Chloroplast, Outer Membrane, Inner Membrane

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9
Q

What is a protein?

A

They are long chains of amino acid that are then folded into very specific shapes. They are then held in the right shape by chemical bonds between amino acids.

The shape and structure of proteins is VITAL to their correct function.

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10
Q

What is an enzyme?

A

Enzymes are proteins that help speed up metabolism, or the chemical reactions in our bodies. They build some substances and breaks others down.

Enzymes are proteins that catalyse chemical reactions.
- Enzymes speed up reactions by lowering the activation energy.
- Enzyme is unchanged by the reaction there can be used many times
- They are very specific (one enzyme = one reaction)

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11
Q

Enzyme - Substrate

A

A substrate is the substance which the enzyme acts on to catalyse a reaction

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12
Q

Enzyme LOCK & KEY MODEL

A

All enzymes have an active site - a groove or nook in the protein structure that the enzyme’s substrate can fit into.

According to the lock & key model, the substrate must perfectly fit into the enzyme’s active site for the reaction to be catalysed

Substrates are held in place by hydrogen bonds.

The reaction is catalysed and the products are released by the enzyme.

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13
Q

Enzyme - Induced Fit Model

A

According to the Induced Fit Model, the enzyme’s active site will loosely fit the specific substrate.

When the substrate binds to the enzyme’s active site, the enzyme’s active site changes shape slightly to better fit the substrate and lock it in place. This causes a change in the shape of the substrate too, which makes the reaction more likely to be successful.

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14
Q

Enzyme - Denaturation

A

Enzyme denaturation occurs when an enzyme loses its native conformation, or three-dimensional structure, rendering it unable to bind to substrate and catalyze product formation. The two main causes for enzyme denaturation are deviations from optimal temperature and pH.

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15
Q

Enzyme - Site Competitive Inhibitors

A

Site competitive Inhibitors bind to the active site of the enzyme. They block the active site so that the substrate cannot bind.

If the substrate does not bind, the reaction cannot proceed.

May be reversible or irreversible

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16
Q

Enzyme - Non Site Competitive Inhibitors

A

Non site competitive Inhibitors bind to a location away from the enzyme’s active site.

It causes a change in the shape of the enzyme’s active site so that the substrate does not bind, or binding is impaired.

If the substrate can’t bind securely, the reaction cannot proceed

17
Q

What are the different types of proteins?

A
18
Q

What is a catalyst?

A
19
Q

Relationship between Substrates & Active Site

A

A substrate enters the active site of the enzyme. This forms the enzyme-substrate complex. The reaction then occurs, converting the substrate into products and forming an enzyme products complex. The products then leave the active site of the enzyme.

20
Q

COMPARE and CONTRAST the INDUCED TO FIT and the LOCK AND KEY Model of enzyme function

A
21
Q

Factors affecting enzyme activity/function

A

Temperature

pH

Concentration of substrates

Inhibitors

22
Q

How does Temperature affect enzyme activity?

A

Too cold: Substrate particles are not moving/colliding with the enzyme often

Optimum: Substrate particles are colliding more often and the reaction is catalysed efficiently

Too hot: The enzyme will denature. The enzyme cannot catalyse the reaction.

23
Q

How does pH affect enzyme activity?

A

Most enzymes work inside cells, so optimum pH of 7.

Changes in pH (higher or lower) can affect the way the substrate binds to the enzyme, or cause the enzyme to denature.

24
Q

What are the TWO type of Inhibitors?

A

Site Competitive Inhibitors

Non site competitive Inhibitors

25
Q

Explain how inhibitors affect enzyme activity

A

Inhibitors are substances that prevent enzymes from catalysing a reaction. They are poisons and can include heavy metals such as lead, mercury, and cadmium.

  • Competitive site inhibitor
  • Non competitive site inhibitor
26
Q

Explain how concentration substrates affect enzyme activity

A

When the concentration of substrates increase, the rate of reaction will increase due to more collisions in the enzyme’s active site.

27
Q

Explain the purpose of coenzymes

A
28
Q

What are some different types of proteins?

A

Structural protein, transport proteins, antibodies, enzymes

29
Q

Protein & Enzyme - EXAM QUESTION:
The eastern oyster’s cellular respiration and enzyme activity are affected by temperature, oxygen, concentration, and cadmium, a heavy metal.

Discuss how these factors can affect cellular respiration AND enzyme activity in the eastern oyster, In your answer:

  • Describe the PURPOSE of an enzyme
  • Explain how temperature and cadmium affect enzyme activity
  • Discuss how environmental temperature, oxygen concentration, and cadmium can affect the rate of cellular respiration in the oyster.
A

Respiration is a cellular process controlled by enzymes. Enzymes function at an optimum temperature.

If environmental temperature is too low, substrate/enzyme collision will be less frequent, so the rate of respiration will be low. As environmental temperature increases, respiration will also increase.

The optimum temperature for the oyster will be temperature at which peak rate of respiration occurs. Above this temperature, the enzymes may become denatured, which makes them inactive and is irreversible.

They are denatured because of the change i the shape/structure of the active site which can no longer fit in the substrates(s) involved in the process. Once the active site begins to change shape the rate of cell respiration will decrease, or may stop altogether.

Cadmium is a heavy metal that acts as an enzyme inhibitor. it can combine with the active site/enzyme, blocking it or changing it’s shape, and preventing substrates from attaching/binding to the active site and a product being formed. This prevents the enzyme from functioning properly.