Prelim 1 Biog1440 Flashcards
Cell membrane
membrane that separates the cell from its environment
Phospholipids
Synthesized from glycerol & two fatty acid side chains in ester linkage. The third alcohol (-OH) functional group is linked to a phosphate containing head group.
Amphipathic
Contain both hydrophobic and hydrophilic molecules
Hydrophobic
Not soluble with water
Hydrophilic
Polar, soluble with water
4 major phospholipids
Phosphatetidylcholine, phosphateidylethanolamine, phosphatidylserine, sphingomyelin *additional: Phosphatidylinositol
Entropy
The measure of randomness of a system
High entropy: high disorder & low energy
Low entropy: Lower disorder & greater energy
Hydrophobic effect
Hydrophobic molecules mix well in hydrophobic solvents & hydrophilic molecules with hydrophilic solvents (water) LIKE MIXES WITH LIKE
Phospholipids will spontaneously assemble into bilayers due to hydrophobic effect. Hydrophobic molecules with water tend to form cage like shells (altercate) separating water which forms an ice like layer.
Which is chaotic=entropy which is favorable though it goes against thermodynamics
Fluid mosaics
Phospholipids are not covalently linked to one another, they’re held together by weak hydrophobic forces. So these phospholipids can diffuse around in the plane of the membrane from side to side.
Chemical composition can change to maintain membrane fluidity. A model of membrane structure in which proteins are inserted in a fluid phospholipid biolayer
Fluidity
Controlled by the introduction of a double bond into a fatty acid side chain which leads to bends or kinks in the fatty acid chain which weakens the intra & intermolecular packing interactions (ex. cholesterol)
Cholesterol
At warm temperatures (37 degrees) it limits excess fluidity. At cool temperatures cholesterol maintains fluidity, prevents tight packing of FA chains.
Laterally
Lipids and proteins can drift laterally but the size of the proteins & their interactions often limit their movement.
Peripheral membrane
Surface of the membrane but don’t actually extend into the membrane. Operationally defined as proteins that dissociate from the membrane following treatments with polar reagents, such as solutions of extreme pH or high salt concentration that DO NOT disrupt the phospholipid bilayer
Integral membrane
Extends through the bilayer and usually peaks out of both sides. Proteins can be released only by treatments that disrupt the phospholipid bilayer (ex. detergents)
Outer leaflet
Mainly phosphatidylcholine & sphingomyelin
Inner leaflet
Phosphatidylethanolamine & phosphatidylserine
Why is the phospholipid important?
- The interior phospholipid bilayer uses hydrophobic fatty acid chains which makes it impermeable to water
- Bilayers of phospholipids are fluid so the fatty acids of phospholipids have one or more double bonds which introduce kinks into the hydrocarbon chains & makes them difficult to pack together; therefore the long hydrocarbon chains move freely in the interior of the membrane so its flexible.
Cells can vary the properties of their membranes in two ways:
- They can change the type of polar head group (chlorine-serine-glycerol-ethanolamine) which changes the charge & properties of the membrane
- Change the length & shape of fatty acids
Homeoviscous Adaptation
Cells actively regulate membrane fluidity by changing the shape of their fatty acids depending on the temp they are grown
Transmembrane Proteins
Typically require assistance to integrate into membranes
SecYEG Translocon
Proteins that help other proteins cross or move into the membrane where they become integrated into the membrane. Once the protein is integrated, it can be modified.
Osmosis
The net movement of water (solvent) across a selectively permeable membrane into a region of higher solute concentration.
Facilitated diffusion
Speeds the passive movement of solutes across the membrane.
When transport proteins speed the passive movement of molecules across the plasma membrane (down a concentration gradient).
Active transport
Requires the energy of ATP or the energy available in other gradients (e.g. PMF) & leads to the accumulation of solutes against their gradients.
Uses energy to move solutes against (up) their gradients.
Can also use energy stored in chemical gradients
Six Major Functions of Membrane Proteins
- Transport - water & solutes
- Cell-cell recognition
- Intercellular joining
- Attachment to the cytoskeleton & extracellular matrix (ECM)
- Enzymatic activity
- Signal transduction
Cell-cell recognition
This type of intermolecular recognition helps cells adhere to each other & recognize each other. Protein complex spanning red blood cell membrane, the carbohydrate types give rise to the ABO blood groups.
Intercellular joining
Many cells are joined together by gap junctions (plasmodesmata in plant cells), made up of the protein connexin. So proteins can play important functions in helping cells join & communicate with each other.
Attachment to the cytoskeleton & extracellular matrix
Many eukaryotic cells are surrounded by a complex environment which may include an extracellular matrix. This matrix may include a variety of polymers, proteins & carbs. This matrix provides a substrate for the interaction of many different cell types.
Enzymatic activity & signal transduction
Proteins are important in cell signaling bc many proteins have an enzymatic function & some of these enzymes are important in signal transduction (GPCRs)
GCPRs
Largest family of cell surface receptors in humans
Activate the “G proteins”
G proteins affect the production of “second messenger” molecules
Passive transport
Is diffusion of a substance across a membrane with no energy expenditure
Osmosis
Diffusion of free water across a selectively permeable membrane, like a plasma membrane (more technically, it is the movement of solvent across a selectively permeable membrane into a region of higher solute concentration).
Isotonic solution
Solute concentration is the same as that inside the cell; no net water movement across the plasma membrane
Hypotonic solution
Solute concentration outside is less than that inside the cell; therefore. H20 concentration is higher… cell gains water
Hypertonic solution
Solute concentration is greater outside than inside; cell loses water.
Plant cells turgid
Plant cells are normally “swollen”; this is turgor pressure and is constrained by the cell wall.
Hypotonic: turgid
Flaccid: Isotonic
Hypertonic: Plasmolyzed
Aquaporins
Facilitate the diffusion of water (Aquaporins are integral membrane proteins)
Have a water channel that allows water to pass
Cotransport
Also called secondary active transport uses the energy of ATP directly as in the proton pump.
Couples H+ with sucrose [needed molecules]
Membrane potential
The voltage difference across a membrane
Voltage is created by differences in the distribution of positive & negative ions across a membrane.
Electrochemical gradient
Two combined forces, collectively called the electrochemical gradient, drive movement of ions across a membrane.
- -> A chemical force (the ion’s concentration gradient)
- -> An electrical force (the effect of the membrane potential on the ion’s movement)
Plants and microbes use
Proton pumps that are powered by ATP. The gradient of protons is an energy source for cells.
Bulk transport
Uses exocytosis; cell transports molecules out of the cell (uses energy)
Endocytosis
Phagocytosis, Pinocytosis, Receptor-Mediated Endocytosis
Phagocytosis
A process in which particles present in the environment can be engulfed into a vacuole. Some cells may use this to feed.
Pinocytosis
A process in which vacuoles may be used by the cell to drink (water)
Receptor-Mediated Endocytosis
Whereby compounds binding to the surface of the cell can trigger an engulfment reaction
Model for a cell membrane
Ideally we want a cell that is -Abundant & easy to isolate -Has a typical eukaryotic membrane -Lacks internal membranes Therefore, Red Blood Cells
O2, CO2, H20
Can diffuse into the membrane without a carrier
Uniporters
A uniporter carries one molecule or ion
Symporter
A symporter carries two different molecules or ions, both in the same direction
Antiporter
An antiporter also carries two different molecules or ions, but in different directions.
Metabolism
The totality of an organism’s chemical reactions. Much of metabolism is organized into pathways that utilize enzymes to convert a substrate to a desired product or products.
Enzymes
Proteins that speed up metabolic processes by acting as catalysts mainly by lowering the energy of activation of a reaction.
Speed up reactions by reducing Ea. However, delta G is unaffected, enzymes speed up kinetics, does not affect thermodynamics
Delta G
The favorability of reactions or pathways is given by delta G, Gibbs free energy.
Negative G are energetically favorable and can do work
G=0 cannot be used to do work
The free-energy change of a reaction is the free energy difference between the reactants and products (free energy of the products minus free energy of the reactants). The energy change is the sum of the changes in enthalpy.
Delta G= Delta H - T(Delta S)
ATP’s importance in enzymatic activity
ATP is a critical energy coupling molecule since its hydrolysis has a large negative delta G.
Eukarya
- More complex cells
- Made for multicellular organisms
- Rely on chemistry invented early in evolution
Unity if biochemistry
The biochemistry that underlies life evolved early and it has been retained throughout the many branches of life
*aerobic prokaryote and photosynthetic prokaryote as the early mitochondria and chloroplast
Endosymbiosis
Describes the process of “taming” of a bacterial cell after engulfment by an ancestral Eukaryote (over many, many generations)
Mitochondria
(respiration) evolved from an aerobic, O2 respiring bacterium. Generates ATP and is known as the powerhouse of a cell.
Chloroplast
(photosynthesis) evolved from a photosynthetic (O2 generating) bacterium. Responsible photosynthesis.