Practicum Flashcards
Fluid Thioglycollate Medium (O2, Aerotalerance)
Enzyme:
Metabolic pathway:
+ or – reaction:
Media and reagents used:
Purpose for the test (why?)
Enzyme: N/A
Metabolic pathway: oxidation reduction
+ or – reaction:
(+) Indicator Resazurin turns pink when oxidized
Colorless die in reduced portion
Media and reagents used:
Media – basic and liquid medium designed to promote growth of wide variety of fastidious microbes: anaerobic and microaerophiles.
Takes O2 and reduces it to different molecule
Purpose for the test (why?)
Determine aerotolerance categories of three bacteria; typically anaerobic and microaerophilic. (Stratify)
Anaerobic Jar
Enzyme:
Metabolic pathway:
+ or – reaction:
Media and reagents used:
Purpose for the test (why?)
Enzyme: N/A
Metabolic pathway: Conversion of H2 and O2 àWater
+ or – reaction:
Paper indicator confirms removal of oxygen (methylene blue when O2 present)
Growth will occur on plate inside jar is anaerobe or microaerophile
Media and reagents used:
Agar plates inoculated with bacteria
Sodium borohydride + sodium bicarbonate - CO2 Gas
Paladium catalyst = H2 and O2 Water
Purpose for the test (why?)
Remove oxygen to produce anaerobic environment for cultivation of anaerobes and microaerophiles
Motility: Hanging Drop technique
Enzyme:
Metabolic pathway:
+ or – reaction:
Media and reagents used:
Purpose for the test (why?)
Enzyme: N/A
Metabolic pathway: N/A
+ or – reaction:
(+) Motility - Look for darting of cells
(-) Motility – Brownian motion created by collision with water molecules
Media and reagents used:
Water drop
Depression slide
Cover glass
Purpose for the test (why?)
Wet mount and hanging drop allows longer viewing of living cells to determine motility; Also used to view natural arrangement, shape, and size. (no heat fix or stain killing microbes)
Bile Esculin Test
Enzyme:
Metabolic pathway:
+ or – reaction:
Media and reagents used:
Purpose for the test (why?)
Enzyme:
Metabolic pathway: Hydrolysis of esculin in bile
+ or – reaction:
(+) - If darkened in 48 hours = Id’ed as group D (streptococcus or enterococcus)
(-) – If darkened after 48 hours, not group D
Media and reagents used:
Medium – undefined, selective and differential;
Bile is the selective agent added
Ferric Citrate is added as a source of oxidized iron to indicate a positive test
Purpose for the test (why?)
Used commonly to presumptively ID streptococcus fecalis. Gram + testing.
Presumptive identification: An identification of a microorganism based upon simple colony and Gram stain observation and the results of relatively simple and inexpensive tests. Although a presumptive identification is believed to be valid, it may not be.
Mannitol Salts Agar
Enzyme:
Metabolic pathway:
+ or – reaction:
Media and reagents used:
Purpose for the test (why?)
Enzyme: N/A Mannitol is a substrate for fermentation
Metabolic pathway: Fermentation (results in acid)
+ or – reaction:
(+) = yellow bacteria growth with halo; Staphylococcus aureus ; acidic (-) = Growth appears pink or red and medium is unchanged; Staph, but not aureus (--)= No growth, no color change; not staph
Media and reagents used
MEDIA:
Sodium Chloride (salt) makes the medium selective (for Staph) and differential (for Aureus). (MSA)
Bacteria are mostly water; causes dehydration.
Halophillic (salt loving) will grow in this medium
Contains pH sensitive dye and mannitol
Purpose for the test (why?)
Differentiate between specific strains of staphylococci
To identify S. Aureus
MacConkey Agar
Enzyme:
Metabolic pathway:
+ or – reaction:
Media and reagents used:
Purpose for the test (why?)
Enzyme: N/A
Metabolic pathway: Fermentation (of lactose)
+ or – reaction:
(-) = colorless – basic; loses red color (+)= Red color (acid presence) + growth = Fermentation + gram negative
(MacConkey’s sink is filthy. It smells like fermented lactose and he’s got an acidic attitude)
Media and reagents used:
Selective Media (allows gram-; inhibits gram+)
Contain pH indicators of fermentation (starts out pink)
Differential (between gram negatives) and selective: Bile salts and lactose, eliminating gram positive from thriving
Purpose for the test (why?):
Isolate and differentiate members of enterobacteriacae based on ability to ferment lactose.
Identify Gram negative.
Oxidation Fermentation Test (O-F Test)
Enzyme:
Metabolic pathway:
+ or – reaction:
Media and reagents used:
Purpose for the test (why?)
Enzyme:
Metabolic pathway: Fermentation and Oxidation
Oxidation: ETC, oxygen final acceptor=CO2 waste
Fermentation: Acidic Waste
+ or – reaction:
(+) :
YELLOW (Sealed&UnSealed)– Fermentation and/or oxidation
Green/Blue – oxidation
Media and reagents used:
Medium – semi solid, low agar conc., allows determination of motility.
Mineral oil is used to seal out oxygen – oxidation should not occur
Purpose for the test (why?)
To differentiate bacteria on the basis of their ability to ferment or oxidize specific sugars.
Phenol Red Broth
Enzyme:
Metabolic pathway:
+ or – reaction:
Media and reagents used:
Purpose for the test (why?)
Enzyme:
Metabolic pathway: (Glucose) Fermentation
+ or – reaction:
Yellow = (+) for glucose fermentation/Acidic
Pink = (-) for glucose fermentation
Bubble in Durham tube = positive for gas production.
Non turbid/No growth = inconclusive
Media and reagents used:
PR Broth (red broth):
differential test medium
Carbohydrate added
pH indicator (Phenol Red)
Inverted Durham tube tests for gas
Purpose for the test (why?)
Phenol Red (PR) Broth is used to differentiate members of enterobacteriaceae and to distinguish them from other gram-negative rods. Test to see if bacteria can break down glucose through fermentation
Methyl Red (Components of IMVIC – to differentiate enterobacteria)
Enzyme:
Metabolic pathway:
+ or – reaction:
Media and reagents used:
Purpose for the test (why?)
Enzyme:
Metabolic pathway: Mixed Acid FeRmentation
+ or – reaction:
(+) = Red at pH 4.4 (fermentation produced acid) (-) = Yellow at 6.2 (closer to basic) Inconclusive = orange
Media and reagents used:
Combination Medium Broth (MR VP Broth)
Peptone+Glucose+Phosphate buffer
Methyl Red Indicator
Purpose for the test (why?)
designed to detect organisms capable of performing a mixed acid fermentation.
Differentiate between enterobacteriaceae and other gram neg rods
Voges-Praskauer Test (Components of IMVIC – to differentiate enterobacteria)
Enzyme:
Metabolic pathway:
+ or – reaction:
Media and reagents used:
Purpose for the test (why?)
Enzyme:
Metabolic pathway: fermentation but quickly convert to neutral product acetoin.
+ or – reaction:
(+) = red (do not mistake copper color of reagent for red) (-) = no color change
Media and reagents used:
MRVP BROTH
Reagent: VP Reagent A and B
Purpose for the test (why?)
designed for organisms that re able to ferment glucose, but convert their acid products to acetoin and 2,3-butanediol
Reagents added oxidize A&2,3B
Differentiate between enterobacteriaceae and other gram neg rods
Catalase Test
Enzyme:
Metabolic pathway:
+ or – reaction:
Media and reagents used:
Purpose for the test (why?)
Enzyme:
Catalase: degrades H2O2 - H2O + O2 (g)
Superoxide Dismutasae: converts radicals into H2O2
Metabolic pathway: aerobic respiration
+ or – reaction:
(+) = bubbles form (catalase present) (-) = no bubbles form
Media and reagents used:
Hydrogen Peroxide
Purpose for the test (why?)
A. Test ability of microbe to degrade hydrogen peroxide
B. Identify organisms that produce catalase
Oxidase Test
Enzyme:
Metabolic pathway:
+ or – reaction:
Media and reagents used:
Purpose for the test (why?)
Enzyme: cytochrome oxidase c (which accepts e- from phenylenediamine)
Metabolic pathway:
Oxidase removes an electron from Cytochrome C allowing electron acceptance of an electron from TMPD (pheylenediamine) reagent.
+ or – reaction:
(+) = dark blue within 20 seconds (caused by electron acceptance from phenylenediamine) (-) = no color change within 20 seconds
Media and reagents used:
Reagent: reduced TMPD
Filter paper
Purpose for the test (why?)
Designed to identify the presence of cytochrome c oxidase
Nitrate Reduction Test
Enzyme:
Metabolic pathway:
+ or – reaction:
Media and reagents used:
Purpose for the test (why?)
Enzyme: Nitrate Reductase
Metabolic pathway: Nitrate Reduction or denitrification
+ or – reaction:
A. Presence of Gas – (+) for denitrification / (+) Gas Bubbles (by known non-fermenter) = Denitrification
If not gas present must ADD reagents:
(+) = Red: Reduction of nitrate (NO3) to Nitrite (NO2) (-) = no color; reduced to something else
Add zinc:
- if turns red not reduced = no nitrate reduction (nitrate was left behind to react with zinc)
- if no color change = Nitrate reduction**
Media and reagents used:
Nitrate Broth(undefined)
Durham Tube
Reagents:
Sulfanic Acid (NR A)
Naphthylamine (NR B)
Zinc
Purpose for the test (why?)
Check for ability to reduce nitrate (either to nitrite or denitrification) using enzyme nitrate reductase.
Citrate Test
Enzyme:
Metabolic pathway:
+ or – reaction:
Media and reagents used:
Purpose for the test (why?)
- Enzyme**: Citrate-Permease*
- Metabolic** _pathway_: Transport of molecules into a cell using citrate-permease .*
- *+ or – reaction:**
(+) = growth or blue; citrate is utilized; basic/alkaline (-) = no color change; no growth; neutral
Media and reagents used:
Simmon Citrate Agar
Contains sodium citrate as source for carbon
Ammonium phosphate for its nitrogen source.
pH Indicator
Brom thymol blue:
green at neutral pH
turns blue at alkaline (basic) pH >7.6.
Purpose for the test (why?)
Used to determine ability of organism to use citrate as a sole source of carbon.
Decarboxylation Test
Enzyme:
Metabolic pathway:
+ or – reaction:
Media and reagents used:
Purpose for the test (why?)
Enzyme:
- Decarboxylase* – removes carboxyl group (COOH); producing alkaline products (pH Test)
- Deaminase* – removes amine group (NH2); uses reagent
- *Metabolic pathway we are discussing** – fermentation; mineral oil used to seal out O2
- *+ or – reaction:**
pH Indicator:
- POSITIVE (+) = purple at 6.8* –alkaline products – decarboxylation took place
- NEGATIVE (-) = yellow below 5.2*, still acidic, no carboxylation
Media and reagents used:
Decarboxylase moller
pH Indicator (purple)
Mineral Oil
Purpose for the test:
- Designed to differentiate members of enterobacteriaceae and to distinguish them from other gram-negative rods.
- Test for present of decarboxylase.
Phenylalanine Deaminase Test
Enzyme:
Metabolic pathway:
+ or – reaction:
Media and reagents used:
Purpose for the test (why?)
- Enzyme**: *Phenylalanine Deaminase
- Metabolic** _pathway_: *removes amine group to
- *+ or – reaction:**
- (+) = green; deaminase is present*
- (-) = no color change or yellow is negative; deaminase is absent*
Media and reagents used:
- Phenylalanine Agar
- Ferric Chloride (FeCl3) - Reacts with phenylpyruvic acid
Purpose for the test (why?)
Test ability of organism to produce phenylalanine deaminase
Starch Hydrolysis
Enzyme:
Metabolic pathway:
+ or – reaction:
Media and reagents used:
Purpose for the test (why?)
- Enzyme**: *a-amylase and oligo-1,6-glucosidase
- Metabolic pathway:** *Hydrolysis of starch molecules
+ or – reaction:
(+) = clearing around growth; amylase present
Media and reagents used:
Starch Agar
Iodine used to reveal the clear areas.
Purpose for the test (why?)
Test ability of organism to hydrolyze starch
Urea Hydrolysis
Enzyme:
Metabolic pathway:
+ or – reaction:
Media and reagents used:
Purpose for the test (why?)
- Enzyme**: *Urease
- *Metabolic** pathway: Hydrolysis of urea into ammonia and carbon dioxide
- *+ or – reaction:**
(+) = pink; urease present; alkaline
Partial pink means slow hydrolysis; urease present
(-) = orange or yellow; no urease present
Media and reagents used:
Urea Broth
Phenol Red as pH indicator
Purpose for the test (why?)
Ability of organism to degrade urea using urease
Casein Hydrolysis Test
Enzyme:
Metabolic pathway:
+ or – reaction:
Media and reagents used:
Purpose for the test (why?)
- Enzyme**: *Casease
- Metabolic** _pathway_: *Hydrolysis of casein (break down amino acids into nutrients)
- *+ or – reaction:**
- (+) = clearing in agar;* casease present
- (-) = no clearing*; casease is not present
Media and reagents used:
Milk Agar – differential medium used to test for casease.
Purpose for the test (why?)
Determine is the organism can hydrolyze casein (protein in milk)