POM 1 Flashcards
Glycolysis
10 steps
Kreb cycle
8 steps
Occurs in the matrix of the mitochondria
Beri beri
Thiamine deficiency à thiamine is cofactor of pyruvate dehydrogenase complex
o So, deficiency of thiamine leads to Beri Beri à difficult to make acetyl CoA from pyruvate – effects on metabolism + respiration
o SYMPTOMS: Damage to peripheral nervous system, Weakness of musculature, Decreased cardiac output
o Brain particularly vulnerable as it relies heavily on glucose metabolism
Metabolism of protein
Protein metabolism involves transamination reactions à amine group transferred from 1 amino acid to keto acid forming new pair of amino acid and keto acids (uses aminotransferases) – GROUP TRANSFER
· Degradation of all 20 amino acids leads to 7 molecules:
o Pyruvate
o Acetyl CoA
o Acetoacetyl CoA
o Alpha-ketoglutarate
o Succinyl CoA
o Fumarate
o Oxaloacetate
The glucogenic amino acids are so-called because their skeletons can give rise to glucose via gluconeogenesis (dashed line). Ketogenic amino acids give rise to skeletons which cannot enter gluconeogenesis but can be used to synthesis fatty acids and ketone bodies.
Metabolism of fatty acids
Fatty acid metabolism produces acetyl CoA
· Fats derived from 3 main sources à (1) diet, (2) de novo synthesis in liver, (3) storage in adipose tissue
· Fats are insoluble so require bile salts to be absorbed by the gut
o Bile salts are created by the liver and stored in the gallbladder
o Bile salts aid absorption of fat and fat-soluble vitamins (2, 7, 9 and 10)
o Lack of bile salts à steatorrhea (fatty, oily stools)
Orlistat (drug)
Inhibits pancreatic and gastric lipases
o Reduces fat absorption by 30% à treats obesity for up to 2 yrs
o Adverse side effects e.g. abdominal pain
Alcohol metabolism in the liver
Cytoplasm
- ethanol +NAD -> acetaldehyde + NADH + H+
Mitochondria
- Acetaldehyde + NAD+ + H20 -> Acetate + NADH + H+
- Acetate + coenzyme A + ATP -> acetyl coA + AMP + PPi
Microsomal ethanol-oxidising systems (MEOS)
- Inducible
- Part of the P450 family of proteins
- Ethanol -> acetaldehyde
- uses NADPH as co-factor
Oxidation of ethanol
• Ethanol -> Acetaldehyde
- Alcohol dehydrogenase (cytosolic): reduces NAD+
- Microsomal ethanol oxidizing system (MEOS) in ER
Co-oxidise NADPH, reduces O2
[↑ in chronic alcoholics, minor otherwise]
• Acetaldehyde -> Acetate
- Acetaldehyde dehydrogenase (mitochon): reduces NAD+
- Acetate converted to acetyl CoA and fed into TCA cycle
How ethanol metabolism results in accumulation of NADH
Inhibits gluconeogenesis
- inhibit conversion of lactate to pyruvate
- lactic acidosis
- hypoglycaemia
Inhibit fatty acid oxidation
- role of beta-oxidation is to generate NADH
- Conditions promote fatty acid synthesis
- ‘fatty liver’ with accumulation of TAG
Inhibit TCA cycle
-NADH regulates key steps in this cycle
How metabolism of alcohol result in production of acetate
Acetate turns into acetyl-coA
BUT
- TCA cycle is inhibited by NADH accumulation
- so ketone bodies will be formed
- ketoacidosis
How metabolism of ethanol results in accumulation of acetaldehyde
Very reactive compound
• Forms covalent bonds with functional groups in proteins, nucleotides and phospholipids
• Binds to glutathione, thereby reducing the antioxidant capacity of liver
– Situation is worsen by induction of MEOS
• increase utilization of NADPH, thereby reducing the ability to regenerate oxidized glutathione
• MEOS will also increase free radical formation
Beta oxidation
Produces >50% of body’s energy, not in brain cells as fat acids cannot cross BBB, not in RBC as they do not hav mitochondria
o Predominates in times of fasting à when fat metabolism dominates during fasting, acetyl CoA forms ketone bodies (don’t enter TCA cycle)
o Fatty acids ultimately converted into acetyl CoA in mitochondria à used to produce ATP
o 1. Fatty acids used to generate acyl CoA (ATP à AMP) à occurs on outer mitochondrial membrane
o 2. Acyl carried across membrane to mitochondria matrix in acyl carnitine à acyl bonds back to CoA (acyl added to carnitine using carnitine acyltransferase I)
Carnitine and Acyl carnitine are moved to and from the matrix by a translocase.
o 3. Acyl CoA goes through cycle of oxidation, hydration,
oxidation and thiolysis reactions to generate acetyl CoA (beta-oxidation spiral)
o 4. Cycle repeats until finalAcyl CoA is metabolised into acetyl CoA molecules
o Acetyl CoA generated only enters TCA cycle if B oxidation and carbohydrate metabolism are balanced as oxaloacetate is needed for acetyl CoA to enter the cycle
o NET RESULT OF EACH CYCLE è 1 x Acetyl CoA, 1 x Acyl CoA (2 Cs shorter), 1 x FADH2, 1 x NADH
Lipogenesis
Fatty acids are formed sequentially by decarboxylative condensation reactions involving acetyl CoA and malonyl-CoA
o Following each round of elongation, fatty acid undergoes reduction and dehydration by sequential action of ketoreductase (KR), dehydratase (DH) and enol reductase (ER) activity
o Growing fatty acyl group is linked to an acyl carrier protein (ACP)
KEY STEPS
• Acetyl CoA from glucose transported into cytosol as citrate
• Malonyl CoA formed by acetyl CoA carboxylase (ACC), requiring biotin
cofactor: committed irreversible step
• Stepwise elongation of acyl chain 2C at a time by fatty acid synthase
(FAS) (multienzyme complex + acyl carrier protein)
• Palmitate released by hydrolysis, combines with G3P to form triglycerides
Oxidative phosphorylation
Occurs on the inner membrane
NADH needs to enter mitochondrial matrix to be used to regenerate NAD+
· Electrons from NADH are carried across mitochondrial membrane via shuttles (rather than NADH itself)
· Done through 2 different shuttles:
o GLYCEROL-PHOSPHATE SHUTTLE
o MALATE-ASPARTATE SHUTTLE
Glycerol-phosphate shuttle
Skeletal muscle and brain
Cytosolic G3P dehydrogenase transfers electrons from NADH to DHAP (dihydroxyacetone phosphate) to generate G3P
§ Membrane bound form of same enzyme transfers electrons to FAD – these then pass on to co-enzyme Q, part of ETC
Malate- aspartate shuttle
à liver, kidney, and heart
§ Also relies on cytosolic and membrane bound forms of same enzymes – aspartate transaminase and malate dehydrogenase
Aspartate glutamate) -> oxaloacetate
Oxaloacetate NAD+) -> malate
§ Transamination reaction as well as redox and group transfer
Electron transport chain
Occurs in inner membrane of mitochondria
o Consists of 3 complexes and 2 mobile carriers
o COMPLEXES à NADH dehydrogenase, cytochrome b-c1, cytochrome oxidase complex
o MOBILE CARRIERS à ubiquinone, cytochrome c
o As electrons from co-enzymes pass through each complex, proton is pumped into intermembrane space
o Protons move from high to low concentration through enzyme allowing ATP to be synthesised
FADH2 produces fewer ATP as Complex I is bypassed and fewer protons are pumped into inner membrane space
ATP
Produced by ATP synthase à torsional energy fixes phosphate to ADP – can be forward or reverse
o Direction of H+ flow dictates ATP synthesis vs ATP hydrolysis
o Oxidation of 1 x acetyl CoA molecule gives 3 x NADH + 1 x FADH2 + 1 x GTP = 12 ATP
o NOTE: creatine kinase acts as a buffer for ATP production during exercise à creatine phosphate buffers demands for phosphate during exercise
Redox reaction
Substrate that can exist as oxidised and reduced forms = redox couple e.g. NAD+/NADH or FAD/FADH2
o +ve E’0 implies tendency to ACCEPT electrons = more OXIDISING POWER = more likely to be REDUCED
o -ve E’0 implies tendency to DONATE electrons = more REDUCING POWER = more likely to BE OXIDISED
o Transfer of electrons from one complex to another is energetically favourable
o Electrons lose energy as they progress through the chain
Malonate
Closely resembles succinct explanation and acts as a competitive inhibitor of succinate dehydrogenase ->slows down the flow of electrons from succinate to ubiquinone (complex q) by inhibiting the oxidation of succinate to fumarate
Rotenone
Found in roots and seeds of some plants, inhibit transfer of electrons from complex I to complex q
Cyanide CN- and azide N3-
Bind with high affinity to ferric acid Fe3+ form of Haem group in cytochrome oxidase complex which blocks final step of ETC
Oligomycin
Antibiotic produced by streptomyces -> inhibits oxidative phosphorylation by binding to stalk of ATP synthase and blocking the flow of protons through enzymes
DNP
A proton ionophore which can shuttle protons across the inner mitochondrial membrane without passing through ATP synthase