Plasma Membrane Flashcards

Plasma Membrane Structure, Receptors and Signaling, Movement of Drugs Across Membrane

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1
Q

What is the plasma membrane of animal cells made of?

A

It is a phospholipid bilayer. A phospholipid is made of a glycerol bonded to 2 fatty acids and a phosphate group. The phosphate head is hydrophilic and fatty acids are hydrophobic (an amphipathic molecule). The bilayer is made of two rows of phospholipids with the fatty acid tails facing inwards towards each other.

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2
Q

Why is the phospholipid bilayer described as the fluid mosaic model?

A

‘Fluid’- components like carrier proteins can move freely within the membrane.
‘Mosaic’- Components of different size and shapes fit together.

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3
Q

What is the role of membranes?

A

Compartmentalisation- Membranes separate different cells and organelles so they can carry out their individual function.
Selectively permeable- This allows the membrane to control what enters and leaves the cell.
Communication- Used in cell signalling via receptors on the surface of the plasma membrane.
Chemical reactions- The plasma membrane is also a site where chemical reactions take place.

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4
Q

What are intrinsic proteins?

A

Intrinsic proteins are found embedded in the membrane.

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5
Q

An example of an intrinsic protein is a carrier protein. How does a carrier protein work?

A

Carrier proteins transports substances across a membrane by changing shape. Carrier proteins can actively transport substances against a concentration which would require ATP. Carrier proteins can also transport molecules along the concentration gradient, which would not require ATP and be known as facilitated diffusion.

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6
Q

Other than carrier proteins, what is another example of an intrinsic protein?

A

Channel proteins.
Channel proteins helps with transporting substances via facilitated diffusion. The substances transported through these channels are polar or charged so cannot simply diffuse through the membrane. Channel proteins have specific function; different channel proteins transports specific molecules. For example, aquaporins are channel proteins that only transport water molecules. There are also sodium and potassium ion channels.

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7
Q

Why are proteins able to lie in the phospholipid bilayer?

A

A proteins tertiary structure is composed of polar, charged and non charged regions. The polar and charged regions of a protein is unable to interact with the fatty acid tails of the phospholipid bilayer. Hence, the protein arranges itself in a certain way so that the polar and charged region is found on the interior and the non-charged regions are found on the exterior (these proteins are globular).

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8
Q

What are extrinsic proteins? Give 2 examples of extrinsic proteins.

A

Extrinsic proteins are found partially embedded in the plasma membrane. Two examples of extrinsic proteins are glycoproteins and glycolipids. Glycoproteins or glycolipids is where a carbohydrate chain is attached to either a phospholipid or protein in the membrane.

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9
Q

What are some functions of glycoproteins and glycolipids?

A

The carbohydrate chain on glycoprotein or glycolipid can be used as an antigen. The shape of the carbohydrate chain is specific to different cells; the carbohydrate chain on a bacteria cell would be different from the one on a body cell. This is what white blood cells use to differentiate pathogens from body cells in an immune response.
Receptors for cell signalling. The carbohydrate chains can also be receptors, where molecules like hormones can bind on to. The carbohydrate chain is typically from a glycoprotein, because the protein attached tends to be an enzyme, which initiates a reaction as a result of hormone signalling.

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10
Q

What is cholesterol and its function?

A

Cholesterol is a lipid molecule found in the plasma membrane that regulates the fluidity of the membrane. The cholesterol molecules contains an -OH group that cannot interact wit the fatty acid tails. This -OH group is found facing out of the membrane.

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11
Q

What forces are found in the phospholipid bilayer? Where are they found?

A

Weak intermolecular forces are found between fatty acid tails on different phospholipids. They are also found between proteins and phospholipids. These intermolecular forces stabilises the structure of the membrane, but, phospholipids and other components are still able to move around a bit.

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12
Q

How does increasing temperature affect the phospholipids in the membrane?

A

Increasing temperature means giving thermal energy.
Thermal energy transferred to kinetic energy.
Kinetic energy causes phospholipids to vibrate.
When they start to violently vibrate, intermolecular forces between the phospholipids start to break.
This reduces stability of the membrane and opens up gaps in the membrane.
More molecules can simply diffuse through, hence, permeability increases.

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13
Q

How does increasing temperature affect the proteins in the membrane?

A

Increasing temperature causes the proteins to denature as bonds are broken in the tertiary and quaternary structure of the protein.
A denatured protein changes shape of the protein, so the protein may no longer be able to transport molecules across the membrane. Hence, the permeability of the membrane is altered.

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14
Q

How does non-polar solvents affect the fluidity of the membrane?

A

Non-polar solvents are able to interact with the fatty acid tails in the phospholipid bilayer. For this reason, non-polar solvents are able to slip between fatty acid tails and stay there. This in turn disrupts the intermolecular forces between the fatty acid tails and causes them to break. The phospholipids move further apart, leaving gaps in the membrane. Now molecules are able to simply diffuse through the membrane more easily and hence, permeability as well as fluidity increases.

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15
Q

How does ethanol as a non-polar solvent bring about the side affects of alcohol?

A

Ethanol is an alcohol that can be consumed. In nervous transmission, the nerve impulses are brought about by the the movement of ions across the membrane. If ethanol as a non-polar solvent is able to disrupt the membrane (make membrane more permeable), there will be more movement of ions across the membrane. This unwanted ion diffusion across the membrane can bring about unwanted nerve impulses.

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16
Q

Ethanol at high concentrations can be used as a disinfectant. How does this work?

A

High concentration of ethanol means there is more alcohol molecules. Hence, the membrane can be disrupted at a higher rate and can even be broken down, due to a lack of intermolecular forces. Using high concentrations of ethanol in alcohols as a disinfectant can kill bacterial cells, by breaking down its membrane.

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17
Q

Define diffusion.

A

Diffusion is the net movement of particles down the concentration gradient.

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18
Q

What is facilitated diffusion?

A

This is diffusion across protein channels in the membrane. The proteins in the membrane is what makes a cell selectively permeable. The permeability of the cell (and plasma proteins present) can be linked to the function of the cell.

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19
Q

How does temperature affect diffusion rate?

A

A higher temperature means more kinetic energy is given to the system. With the increased KE, phospholipids starts to vibrate and move apart slightly. Gaps in the membrane means more molecules can diffuse across. (An increased kinetic energy also means molecules can move faster).

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20
Q

How does concentration gradient affect the rate of diffusion?

A

A steeper concentration gradient means more molecules are likely to move from an area of high concentration to low concentration.

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21
Q

Other than temperature and concentration, what other two factors affect the diffusion rate?

A

Surface area to volume concentration, and thickness of membrane.

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22
Q

Define osmosis.

A

Osmosis is the net movement of water down a water potential gradient across a partially permeable membrane.

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23
Q

What units is water potential measured in?

A

Pa, or kPa

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24
Q

What does it mean if a solution has a water potential of 0kPa?

A

This means the solution is pure water and there is no solutes present.

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25
Q

How does values of water potential vary with concentration of solutes in a solution?

A

Water potential can always ever be 0 or less than 0. A solution with more solutes will have a more negative value.

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26
Q

What does it mean if a cell is surrounded by a hypotonic solution?
What is the direction of the net movement of water?
How does this movement of water affect an animal cell?
How does this movement of water affect a plant cell?

A

If a cell is surrounded by a hypotonic solution, it means the solution has a higher water potential than that of the cell, as it contains less solutes.
Hence, this means that the net movement of water will be going from the solution outside to inside the cell- in this sense, it is moving along the water potential gradient.
This net movement of water into an animal cell will put too much pressure on the cell surface membrane and will cause it to burst or undergo lysis.
The net movement of water into a plant cell will cause it to become turgid. It does not burst because the strong plant cell is able to withstand the pressure of the water.

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27
Q

What does it mean if a cell is surrounded by a hypertonic solution?
What is the direction of the net movement of water?
How does this movement of water affect an animal cell?
How does this movement of water affect a plant cell?

A

If a cell is in a hypertonic solution, the solution has a lower water potential than that of the cell, as the solution contains more solutes.
In this sense, the net movement of water will be from inside the cell to the surrounding solution outside (travelling along the water potential gradient).
The net movement of water out of an animal cell will cause it to shrivel up or undergo crenation.
The net movement of water out of a plant cell will cause it to undergo plasmolysis. The general shape of the plant cell is maintained, but the cell surface membrane detaches itself from the cell wall and goes inwards.

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28
Q

What does it mean if a cell is surrounded by a isotonic solution?
What is the direction of the net movement of water?
How does this movement of water affect an animal cell?
How does this movement of water affect a plant cell?

A

If a cell is in an isotonic solution, the water potential of the solution is the same as the water potential inside the cell.
Hence, this means the rate of movement of water into the cell is equal to the rate of movement of water outside the cell.
If an animal cell is in an isotonic solution, it will exist in its normal state.
If a plant cell is in an isotonic solution, it is flaccid (its normal state), where the cell surface membrane is just touching the cell wall.

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29
Q

Define active transport.

A

This is the movement of particles against a concentration gradient, using ATP and involving protein carriers.

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30
Q

ATP is required in active transport, within protein carriers. How is the ATP used?

A

ATP is hydrolysed to ADP and a phosphate ion. The binding of the phosphate ion to the carrier protein brings about a conformational change, which then allows the carrier proteins to carry molecules across the membrane. When the phosphate ion is released, the carrier protein returns to its original shape.

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31
Q

What is bulk transport?

A

When we refer to active transport, we normally refer to the movement of small molecules and ions. Bulk transport is the movement of large molecules, like glucose or bacteria.

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32
Q

Endocytosis is a type of bulk transport. What is endocytosis? Provide examples.

A

Endocytosis is the bulk transport of molecules into a cell.
An example is phagocytosis, where white blood cells engulf foreign matter.
Another example is pinocytosis, which is the engulfing of liquids.

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33
Q

Another type of bulk transport is exocytosis. What is exocytosis?

A

Exocytosis is the bulk transport of molecules outside of a cell.
An example is if a protein synthesised in a cell is an extracellular enzyme, the enzyme is packaged into vesicles and fuses with the plasma membrane to leave the cell.

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34
Q

What is the difference between integral and peripheral proteins?

A

Integral proteins are embedded in the membrane, where as peripheral proteins are attached to just surface of the proteins. Peripheral proteins are JUST proteins, and not glycolipids or glycoproteins (can be mistaken as glycolipids and glycoproteins are found on the exterior of the membrane).

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35
Q

What are transmembrane proteins?

A

Transmembrane proteins are a subset of integral proteins. Some integral proteins are partially embedded in the membrane and serves as different functions, like being enzymes or receptors. Transmembrane proteins are integral proteins that spans the whole lipid bilayer, and a lot of these transmembrane proteins aids in transport- channel proteins.
As transmembrane proteins spans the whole bilayer, they are in contact with the external aquiesce evironment as well as the bilayer, making them an amphipathic molecule.

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36
Q

What is a glycocalyx?

A

A glycocalyx is a protective layer formed when glycolipids and glycoproteins join together. It functions in holding cells together.

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37
Q

What are the things on the plasma membrane of a red blood cell that determines our blood type?

A

It is shape of antigens on the surface of red blood cells that determines our blood type. Antigens are glycolipids, so it is essentially the shape or the carbohydate chain.

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38
Q

What are the different classes of lipids in the plasma membrane?

A

Phosphoglycerides (or known as phospholipids), sphingolipids and steroids.

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39
Q

How does saturation of fatty acids in the plasma membrane affect the fluidity of the membrane?

A

If fatty acids are unsaturated, they have a double bond. The more the unsaturated fatty acids in the membrane, the more fluid the membrane is.

The fluidity increases with unsaturation because the double bonds provides a kink within the bilayer. The bilayer prevents phospholipids packing closely together, and hence, increases the fluidity of the membrane.

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40
Q

Why do animals living in colder environements benefits by having more unsaturated fatty acids in their plasma membrane?

A

In reezing temperatures, a bilayer with saturated fatty acids would freeze and solidify (due to compression from the cold); this in turn affects many functions, like transport across the membrane, or the membrane being a site of chemical reactions.

Whereas, is unsaturated fatty acids are compressed from decreasing temperatures, their ‘kinks’ pushes adajacent phospholipids away, maintaining space and fluidity.

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41
Q

How does membrane fluidity change with temperature?

A

In higher temperatures, the weal intermolecular forces break spreading phospholipids apart and increasing fluidity.

In colder temperatures, phospholipids compress together, and can freeze and solidify, decreasing fluidity.

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42
Q

What is the role of cholesterol?

A

Cholesterol is essentially a buffer to changes in membrane fluidity (which can change due to many factors, like non-polar solvents and temperature). In colder temperatures, cholesterol keeps phospholipids apart and stops them from freezing. In warmer tempertaures, cholesterol binds phospholipids tighter together to reduce fluidity.

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43
Q

What factors can affect membrane fluidity?

A

Presence of saturated/unsaturated fatty acids, temperature and cholesterol.

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44
Q

What is co-transport?

A

Works by transporting 2 molecules (or ions) at a time, through the same transport protein, and using the diffusion of one of the solutes to force the other solute against its gradient.

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45
Q

What is uniport?

A

Transporting a single substance through a transport protein in one direction.

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46
Q

What is symport?

A

This is where two substances are transported in the same direction through the same transport protein (one substance diffuses through, and the other substance uses the energy released from the first substance’s diffusion).

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47
Q

What is antiport?

A

This is when two substances are transported in opposite directions through the same transport protein (one diffuses, and one is actively transported).

48
Q

What is primary active transport?

A

Primary active transport is actively transporting a substance by using ATP directly (the hydrolysis of ATP). ATP is hydrolyzed by the transport protein, so in a sense, the transport protein can also be seen as an enzyme, ATPases.

49
Q

What is secondary active transport?

A

This is actively transporting a substance but using energy in an indirect way to do so. A common example is the diffusion of a substance. When a substance passively moves down its concentration gradient, it releases energy in which another substance can use to be pumped against its concentration gradient.

50
Q

What is vesicular transport?

A

Active movement of substances across a cell membrane via a vesicle.

51
Q

How can substances be transported from cell-to-cell?

A

Via Jap junctions.

52
Q

What is the function of an Na ion / K ion pump and where can it commonly be found?

A

An Na ion / K ion transport both Na ions and K ions against their concentration gradient. This pump is commonly found in neuron membranes to establish a resting potential and to help in hyperpolarization.

53
Q

What type of membrane transport does an Na ion/ K ion pump help with?

A

Active transport, more specifically antiport.

54
Q

Briefly describe how an Na ion/ K ion pump works.

A

3 Na ions binds to the interior of the pump.
Hydrolysis of ATP results in the formation of ADP and a phosphate ion. The phosphate ion binds to the exterior of the pump (allosteric site).
This causes the pump to undergo a conformational change and the pump’s affinity for Na ion decreases, so Na ions are released to outside the cell.
From the side the Na ions were released, 2 K ions bind to the pump.
The phosphate ion that was binded to the pump is now released. This causes the pump to return to its original structure, and the K ions are exposed to the other side and released.

Note: Na ions always released outside the cell membrane in neurons and K ions always released inside cell membrane.

55
Q

What proteins are involved with transporting glucose from the hut to the bloodstream?

A

GLUT and SGLT. GLUT is a protein that helps with the facilitated diffusion of glucose from epithelial cells to the bloodstream.

SGLT is sodium-glucose-linked-transporter, which essentially pumps glucose from the gut into the epithelial cell. Found in intestinal tract and renal tubules.

56
Q

Describe the process of absorption of glucose into the bloodstream from the gut.

A

There are 3 spaces involved in this mechanism: the gut, the epithelial tissue lining the gut, and the blood capillaries/bloodstream.
Sodium ions that initially exist in the epithelial tissue is pumped into the bloodstream, using a sodium/potassium pump (K ions are pumped into the opposite direction- into the epithelial tissue).
A sodium ion concentration gradient is established between the gut (high concentration) and the epithelial tissue (low concentration).
The electrochemical driving force diffuses sodium ions down this gradient, by co-transporting it with glucose through the SGLT protein. This is actually an active process for glucose as it is being transported against its concentration gradient and does so by using the energy released via the diffusion of the sodium ions.
There is now a high concentration of glucose in the epithelial tissue which diffuses into the bloodstream via the GLUT protein.

57
Q

State the types of membrane transport present in the mechanism of absorption of glucose into the bloodstream.

A

The SGLT is an example of co-transport, more specifically symport. It is also an example of secondary transport because the glucose indirectly uses energy released by the diffusion of sodium ions to move itself against its concentration gradient.

The Na ion/ K ion pump is also an example of co-transport, more specifically antiport. Unlike SGLT, it is an example of primary active transport, because it directly uses hydrolysis of ATP to pump the K and Na ions.

The GLUT protein helps with facilitated diffusion.

58
Q

In the mechanism of formation and transport of HCl in the stomach, what proteins are present in the membranes?

A

In the membrane that separates the stomach parietal cell and blood, there is a Cl- / HCO3- cotransporter.

In the membrane that separates the stomach parietal cell and stomach lumen, there are 3 transport proteins. There is a H+ / K+ co-transporter, a K+ ion channel and a Cl- ion channel.

59
Q

What are the three main areas involved in the mechanism of formation of HCl in the stomach?

A

The interstitial fluid/ blood, stomach parietal cells (epithelial cells for the stomach) and the stomach lumen.

60
Q

In the mechanism of formation of HCl in the stomach, how are bicarbonate ions formed in the stomach parietal cells?

A

First, carbon dioxide from the blood diffuses into the stomach parietal cells. Here, the carbon dioxide reacts with water to form carbonic acid, H2CO3. The carbonic acid dissociates into a bicarbonate ion HCO3- and a hydrogen ions H+.

61
Q

In the mechanism of formation of HCl in the stomach, how do chloride ions, Cl-, end up in the stomach lumen?

A

After bicarbonate ions are formed from the reaction of carbon dioxide and water, the bicarbonate ions wants to move back into the blood. It does this by being co-transported with chloride ions through a protein pump- the bicarbonate ions move from the parietal cells into interstitial fluid, and the chloride ions move from the interstitial fluid to the parietal cells. This is an example of antiport as well as active transport as Cl- ions are being pumped against their concentration gradient.

The accumulation of Cl- ions in the parietal cells creates a concentration gradient between the parietal cells and the stomach lumen. The electrochemical driven force allows Cl- ions to diffuse down this concentration gradient, with the help of a Cl- ion channel.

62
Q

In the mechanism of formation of HCl in the stomach, how do H+ ions enter the stomach lumen?

A

After being formed via the reaction between carbon dioxide and water, H+ ions are formed (as well as bicarbonate ions). The H+ moves into the stomach lumen via a co-transport protein, which pumps K+ ions into the parietal cells, while H+ diffuses from the parietal cells into the stomach lumen.

This process constantly happens because there is always a supply of K+ in the stomach lumen. This is because once K+ is actively pumped into the parietal cells, the concentration gradient allows K+ to diffuse back down into the stomach lumen via K+ ion channels.

63
Q

Why is HCl an important component to the stomach?

A

HCl aids in digestion because its acidic nature activates enzymes (like activating pepsinogen into pepsin, which now has a true function) essential for the breakdown of food. The acidic nature of HCl also helps to kill harmful pathogens in food.

64
Q

State the transport proteins present in the mechanism of formation of HCl in the stomach, and state what type of transport they help with.

A

The membrane that separates the blood and stomach parietal cells, contains bicarbonate ion (HCO3-) / chloride ions (Cl-) pumps. This is an example of active transport and co-transport, antiport.

The membrane that separates the parietal cells and stomach lumen has 3 transport proteins:

The first is a K+ / H+ pump. This is an example of active transport and co-transport, antiport.

The second is a K+ ion channel. This is facilitated diffusion, used to re-establish a concentration (or the presence) of K+ ions in the stomach lumen.

The third is a Cl- ion channel. Also an example of facilitated diffusion.

65
Q

What are the molecules that bind to receptors on cells?

A

Ligands

66
Q

What are examples of some responses that can be brought about via the binding of molecules to receptors?

A

Synthesis, secretion, adherence, chemotaxis and phagocytosis.

67
Q

What happens to a ligand after it binds to a receptor and initiates a response?

A

The ligand is modified or degraded by the cell to change or end the response.

68
Q

What are the four types of signaling?

A

Endocrine signaling (hormones transported via the blood), paracrine signaling (signaling nearby cells, by releasing ligands into the extracellular matrix via vesicles), autocrine signaling (a cell that releases a ligand that targets the same cell that released the ligand to bring about a function in the cell) and signaling across gap junctions.

69
Q

What are the four types of cell-surface receptors?

A

G-protein coupled, tyrosine kinases and enzyme linked receptors, ion-channels and toll-like receptors.

70
Q

Briefly describe the structure of G proteins.

A

G proteins contains 3 sub-units: alpha, beta and gamma. G proteins are named ‘G proteins’ because of their ability to band to guanosine nucleotides. The binding site for the guanosine nucleotide is the alpha subunit.

71
Q

How can we tell is a G-protein coupled receptor is inactive?

A

If a G-protein coupled receptor is inactive, it has GDP (guanosine diphosphate) binded to the alpha subunit. In its active state, GDP is released and a GTP (guanosine triphosphate) is binded to the alpha subunit.

72
Q

Once the GTP is binded to a G-protein, how are substances transported across the membrane?

A

The alpha subunit (and the GTP) dissociates from the G-protein, leaving the alpha and gamma structure, called a beta-gamma dimer.

The alpha subunit binds to other proteins, like ion channels or enzymes e.t.c, in the plasma membrane (also known as effectors) and causes a change to the effector’s function- it can upregulate or downregulate its function.

Normally the substance produced is a primary messenger, that causes the production of a secondary messenger, which then causes a cascade of reactions.

73
Q

The binding of the alpha subunit to the effector can amplify or lessen the effector’s function forever. How is it stopped?

A

The G protein also acts as an enzyme, GTPase, because the GTP that is binded to the alpha subunit can be hydrolysed to form a GDP and a phosphate ion. GDP binds to the alpha subunit and makes it inactive. The alpha subunit returns itself to the beta-gamma dimer, completing the G-Protein coupled structure again.

74
Q

Give an example of a G-protein coupled receptor. Give the names of the receptor, the ligand, the effector and its function, and the primary messenger.

A

An example of a G-protein receptor is adrenergic receptor. The ligand that binds to this receptor is adrenaline. The effector in the plasma membrane which the alpha subunit binds to, is the adenylyl cyclase enzyme which converts ATP to cyclic AMP. Cyclic AMP is the primary messenger.

Cyclic AMP activates kinase enzyme that catalyses the transfer of a phosphate group from ATP to a protein, altering the structure of the protein which brings about a response in the cell.

75
Q

What responses can the secretion of adrenaline bring about?

A

Increase in heart rate, increase in glucose availability in the muscle, decrease in digestion.

76
Q

What are enzyme-linked receptors?

A

Enzyme linked receptors is a transmembrane receptor that spans the whole membrane. The external receptor is the binding site for the ligand and the internal surface is where the enzymatic activity takes place.

77
Q

What is a common type of enzyme linked receptor?

A

Tyrosine kinases.

78
Q

Briefly describe the process when a ligand binds to the tyrosine kinase receptor.

A

A messenger binds to the receptor, changing its conformation.
The conformation change activates the tyrosine kinase enzyme.
The tyrosine kinase enzyme phosphorylates an intracellular enzyme.
Phosphorylation changes the protein’s activity by covalent regulation, bringing about a response in the target cell.

79
Q

What is the general function of the tyrosine kinase enzyme on the tyrosine kinase linked receptor?

A

The tyrosine kinase enzyme phosphorylates the amino acid tyrosine, in the side chains of a protein. It does this by using ATP. The phosphorylation changes its activity by covalent regulation.

Changes in the protein helps to regulate cell growth, differentiation and survival.

80
Q

Describe the structure of the receptor tyrosine kinase.

A

The receptor tyrosine kinase has its receptor on the side of the membrane with extracellular fluid, and the tyrosine kinase enzyme in the cytosol. The tyrosine kinase enzyme occurs in pairs, and dimerise (dimer= a molecule consisting of two identical molecules linked together) on activation, phosphorylating each other.

81
Q

A possible cause of cancer is because of epidermal growth factors (EGF), which are capable of binding to tyrosine kinase receptors of cells. The tyrosine kinase enzyme can take on different forms with different ligands, so we can call the tyrosine kinase enzyme that is specifically for the EGF ligand, epidermal growth factor receptor (EGFR). How can this binding of EGF lead to cancer?

A

The EGF is responsible for regulating many transcription factors involved in cell proliferation. Hyperactivation of this cell proliferation function can be caused by: overexpression of the EGFR, overproduction of the EGF receptor and mutation of the receptor which causes the signaling pathway to be continuously active.

Uncontrollable cell proliferation can result in the formation of a tumour, which can lead to cancer.

82
Q

Other than the EGF, what is another ligand that can bind to the tyrosine kinase receptor?

A

Insulin

83
Q

What are ion channel receptors?

A

Ion channel receptors are membrane proteins with an aqueous pore running through it. It works where if a ligand binds to ion channel, the ion channel would open, and ions can go through.
This is an example of a ligand-gated ion channel. There are other types of ion channels like voltage gated and mechanically gated.

84
Q

In what cells can ion channel receptors be found?

A

Neurons, muscle cells and epithelial cells.

85
Q

Ion channel receptors are essential for what processes in the body?

A

Nerve conduction, muscle contraction and regulation of cell volume.

86
Q

The dysregulation of ion channels can lead to what diseases?

A

Epilepsy (neurological disorder that cause seizures or unusual sensations), cardiac arrhythmias (abnormal heart rhythm- irregular, too fast or too slow) and cystic fibrosis (the lungs and digestive system gets clogged with mucus).

87
Q

Where can toll-like receptors be found?

A

Found on the surface of immune cells, and some non-immune cells like epithelial, endothelial and fibroblasts.

88
Q

Toll like receptors bring about various functions in the immune system. What are they?

A

Cytokine production, proliferation, extravasation (leakage of fluids from a vein into surrounding tissue) and antigen presenting.

89
Q

What are pathogen-associated molecule patterns (PAMPS)?

A

Pathogen-associated molecular patterns are unique structures present in microbes. They are repeating molecular patterns, that are absent in microbes, and hence is what distinguishes a microbe from a body cell.

Lipopolysaccharide (LPS) is present in the outer membrane of gram-negative bacteria. They are a type of PAMP that TLRs can detect and recognise.

90
Q

What are pattern recognising receptors (PRRs)?

A

PRRs are receptors that are able to recognise PAMPs from microbes. TLRs are a subset of PRRs.

91
Q

Why are toll like receptors essential for the immune system?

A

Important in recognising pathogens and initiating immune responses (like prediction of pro-inflammatory cytokines and interferons). Heavily involved in study of infectious diseases, immunology and therapeutic development.

92
Q

What can dysregulation in TLRs cause?

A

Dysregulation in TLRs can result in inflammatory diseases and autoimmune disorders.

93
Q

What are the general steps in a signaling pathway involving a receptor?

A

Receptor activated, signal transduction, regulation gene transcription or change in protein structure, change in cell activity.

94
Q

What are general cell responses to a ligand binding to a receptor?

A

Synthesis and secretion of proteins, growth/differentiation of tissues, cell interaction with environment, cell death/survival.

95
Q

What are the three types of endocytosis?

A

Phagocytosis, receptor-mediated endocytosis and pinocytosis.

96
Q

What does it mean if some forms of endocytosis are specific?

What types of endocytosis are specific?

A

If some forms of endocytosis is specific, it means they only engulf certain substances.
Phagocytosis and receptor mediated endocytosis are specific.
Pinocytosis are non-specific.

97
Q

What type of cells (specialised or not specialised?) can carry out the following types of endocytosis: phagocytosis, receptor mediated endocytosis and pinocytosis.

A

Phagocytosis is carried out by specialised cells, more specifically white blood cells, like macrophages and neutrophils.

Receptor mediated endocytosis and pinocytosis can be carried out by all eukaryotic cells.

98
Q

What is phagocytosis?

A

Phagocytosis is a type of endocytosis, in which specialised cells (more specifically white blood cells) forms a phagosome (a type of vesicle) upon engulfing foreign matter, like pathogens. The phagosome then fuses with a lysosome to form a phagolysosome, in which the foreign matter is broken down by digestive enzymes, and the broken down matter is then released from the cell via exocytosis.

99
Q

What is pinocytosis?

A

Occurs in all cells and is where the plasma membrane pinches together to form an endosome. The contents of the endosome is simply extracellular fluid containing dissolved solutes.

Pinocytosis means ‘cell drinking’.

100
Q

Briefly describe what is generally meant be receptor-mediated endocytosis.

A

Receptor mediated endocytosis is specific compared pinocytosis, even though in both mechanisms the membrane pinches off to form an endosome.

The reason why receptor mediated endocytosis (RME) is specific is because in order for the endosome to form, specific particles has to bind to the receptors in the plasma membrane. The ligand-receptor complex is complementary to each other, and hence, specific.

101
Q

Briefly describe the process in the formation of a clathrin coated vesicle, and what happens after its formation.

A

The formation of a clathrin coated vesicles occurs as a type of receptor mediated endocytosis.

It starts where a specific particle in the extracellular fluid binds to the receptor in the membrane. The binding concentrates particles to the plasma membrane where endocytosis will occur. Generally, the receptors are already present in the areas where endocytosis occurs.

The area of the plasma membrane where endocytosis will occur is coated with proteins called clathrin. The membrane starts to indent in this area, forming a clathrin-coated pit.

After indenting or folding to such a degree, the membrane pinches off to form a clathrin-coated vesicle. In this vesicle are the receptors as well as the contents taken in from the extracellular matrix.

The clathrin coat rapidly comes off, just leaving a vesicle containing contents to be delivered and the receptors. The clathrin proteins in the coat is recycled to be used again.

After this step, the vesicle goes to the place it is needed within the cell. However, the contents taken in during this process are normally material that needs to be broken down and recycled. Hence, what normally occurs is the fusion of the vesicle with a lysosome, which forms an endolysosome. The enzymes present breaks down the contents and releases it from the cell via exocytosis.

102
Q

How does the clathrin coated vesicle ‘bud’ off from the plasma membrane?

A

The clathrin coated vesicle is able to bud off because of a protein called dynamin. Dynamin is present between the clathrin coated vesicle and the membrane. To bud off, the dynamin simply wraps itself around the end of the vesicle that is connected to the membrane tightly, until the clathrin coated vesicle comes off. This process is called scission.

103
Q

What is the role of V-SNARE proteins in the formation of a clathrin-coated vesicle?

A

The V-SNARE proteins helps to bend the plasma membrane, helping in the formation of a clathrin-coated pit, and eventually clathrin-coated vesicle.

104
Q

What is scission?

A

Scission is the process of the clathrin coated vesicle budding off from the plasma membrane.

105
Q

After the formation of the clathrin coated vesicle, the vesicle is transported to parts of the cell in which the vesicle is need. What is the purpose of the clathrin coat?

A

It helps transports the contents of the vesicle, as well as stabilising and protecting the contents of the vesicle from contents of the cell.

106
Q

After the formation of the clathrin coated vesicle, the vesicle is transported to parts of the cell in which the vesicle is need. At some point, the clathrin coat needs to come off to be recycled and used again. How does the ‘uncoating’ process occur?

A

Uncoating process occurs in the presence of an auxilin enzyme. Auxilin, in the presence of ATP, binds to the clathrin proteins in the coat. The binding disrupts the structure of clathrin, causing the coat to come off.

107
Q

What is the role of vesicle snare proteins and target snare proteins in the fusion of the endosome to a target organelle or membrane?

A

Vesicle snare proteins are found on the endosome membrane, and target snare proteins are found on the target membrane to fuse with.

During fusion, the V-snare proteins react with t-snare proteins, which forms a complex. The complex is called an alpha helical bundle.

Fusion and dissociation occurs leading to the endosome releasing its contents into the target organelle.

108
Q

What is snare disassembly?

A

Snare disassembly is the budding off of snare proteins from the endosome, so they can be recycled to be used again.

109
Q

The clathrin- independent process contributes largely to what processes in cells?

A

Cellular polarisation, motility, regulation of signaling and normal cell growth.

Clathrin-independent process is a major contributor to fluid uptake (pinocytosis) in cells and membrane repair.

110
Q

What mechanisms come under clathrin-independent endocytosis?

A

The first mechanism involves caveolin and lipid rafts. Caveolin is a protein in the membrane (like clathrin) that forms endosomes- caveolae.

The second mechanism is similar to pinocytosis, but requires larger vesicles, so is termed macropinocytosis.

111
Q

What is the genetic disease familial hypercholesterolemia?

A

This is a life-threatening condition when people have high levels of cholesterol in their blood.

112
Q

What is low-density lipoprotein (LDL) ?

A

Low-density lipoprotein is a derivative of cholesterol and is sometimes referred to as ‘bad cholesterol’. LDL is removed from the blood by receptor mediated endocytosis (and then broken down in an endolysosome).

Background information:
LDL are particles made of proteins and large amount of fats (fats is referring to the cholesterol, hence LDL being a derivative of cholesterol). LDL is responsible for transporting fats through the bloodstream, as fats cannot move by themselves. Hence, LDL themselves are performing an advantageous function for our body.

However, it is the build up of LDL that can cause issues. LDL can cause to plaque build up on the arteries, which can lead to many other diseases.

113
Q

What are the possible reasons hypercholesterolemia is caused by LDLs?

A

Hypercholesterolemia is the build up of LDLs in our bloodstreams.
There may be a build up of LDLs for numerous reasons:

Not enough of receptor- mediated endocytosis proteins to get rid of the LDLs.
Another protein that is inhibiting the function of the receptor-mediated protein.

114
Q

State how transcytosis is present in the transport of antibodies from the gut to the blood.

A

Antibodies obtained from the intestinal lumen binds to a receptor on the epithelial cells. An endosome encloses the antibody and the receptor, transporting to the basolateral membrane of the epithelial cells. Here, the antibody is released into the blood via exocytosis, while the receptor is recycled back to the apical membrane of the epithelial cells to be used again.

115
Q

What are 4 routes of absorption into the body?

A

Ingestion (eating), inhalation (breathing), dermal absorption (via the skin), intravenously (directly into the blood).