phgy 170 final- module 5 Flashcards
what is the cytoskeleton?
- The cytoskeleton is a network of structural proteins that are found in all cell types
- This filamentous array occupies a large portion of the cytosol and extends throughout the cytoplasm from organelle to the plasma membrane
- It is the cytoskeleton that permits common cellular functions such as signaling and vesicular transport to occur, as well as giving some cells unique properties, including cell motility
- The cytoskeleton also defines the shape of a cell and the distribution of cellular contents
what are the 3 classes of of proteins that make up the cytoskeleton in eukaryotic cells that contribute to cellular strength and permit cellular function?
—–> INTERMEDIATE FILAMENTS
- The primary purpose of intermediate filaments is to add mechanical strength to cells
—–>MICROTUBULES
- The primary purpose of microtubules is to support trafficking within cells
—–>ACTIN
- The primary purpose of actin is to support cellular motility, or other larger-scale movements like contraction
what are the 3 main functions of the cytoskeleton?
—–> BINDING
- Cytoskeletal proteins bind to a target (such as another protein) which includes similar proteins, to form polymers
- Polymers: molecules made up of a large number of repeating units
—–> CONFORMATION
- when the cytoskeletal proteins bind, they undergo conformational changes
—–> FUNCTION
- the function of these proteins is defined by the number and type of cytoskeletal proteins that are bound
what are intermediate filaments?
- Within the cytoskeleton, the intermediate filaments are analogous to the bones of the body, such that these filaments supply strength to cells allowing them to resist changes of shape
- They are the strongest filaments of the cytoskeleton and provide great mechanical strength
- Intermediate filaments are polymers and their expression is tissue and cell specific
- The assembly and disassembly of intermediate filaments is controlled by post-translational modification of the individual proteins
- The intermediate filaments can absorb the greatest amount of stress by deforming/elongating
what are the major classes of intermediate filaments?
- Every cell in the body performs a unique function
- Consequently, each cell faces different types of mechanical stress
- Due to this, cells have evolved the ability to express different intermediate filaments, reflective of the specific needs of the cell
- Intermediate filaments are organized into different classes based on their protein types, which then dictates their distribution, and functions
- Class I and II keratins are the most common intermediate filaments in humans
what proteins are found in the epithelial cells?
acidic and basic keratins what provide tissue strength and integrity
what proteins are found in muscle, glial, mesenchymal and perphevin cells?
- Desmin, GFAP, vimentin and perophevin that provide sarcomere organization and integrity
what proteins are found in neurons?
neurofilaments that allow for axon organization
what proteins are found in the nucleus?
lamins, that provide nuclear structure and organization
why might there be a need for tissue specific expression of intermediate filaments?
different cell types express separate classes of intermediate filaments based on their functions. For example, neurons have the important role of conveying information electrically throughout the body. Neurofilaments, one of the type of intermediate filaments, are required to support this role by organizing and providing structural support to the unique structure of the neuron
what is the primary structure of intermediate filaments?
- The strength of intermediate filaments comes from how the individual proteins are packaged and assembled into polymers
- Similarly to other proteins, intermediate filaments do not gain their properties until they are assembled
- Recall from module 2 that the primary structure of a newly synthesized protein is just a polymer of amino acids linked together by peptide bonds
- Peptide bonds: a stable covalent chemical bond that allows for the sharing of electrons between pairs of atoms, formed between the carboxyl group of one molecule and the amino acid group of another
- At this stage, all proteins have the same strength and an intermediate filament protein is no stronger than any other protein in the body
what is the secondary structure of intermediate filaments?
- If you examine the secondary structure of intermediate filaments, you will begin to notice where their strength comes from
- Recall from module 2 that proteins’ secondary structures can be alpha-helices, beta-pleated sheets and random coils
- Intermediate filaments are very rich in alpha-helices, giving them some of their properties
- Alpha-helices are responsible for the long, coiled structure of filaments, and the hydrogen bonds stabilize the structure as they resist the stretching of the filament and prevent its collapse
What is the tertiary and quaternary structure of intermediate filaments?
- Although the secondary structure of intermediate filaments hints at where they get their properties from, it isn’t until you examine the tertiary and quaternary structures that you will fully understand their function
—–> MONOMER
- The coiled monomer is the tertiary structural level
—–>DIMER
- 2 coiled monomers come together to form a dimer
These monomers wrap around each other to form what is called a coiled coil
- The coiled coil structure allows for maximum contact (hydrogen bonding) between the 2 peptides, and thus conveys tremendous strength to the dimer
- If you recall from module 2, when 2 peptides combine like this dimer, it is described as quaternary structure
- This will further build as the intermediate filaments form tetramers and eventually complex polymers as mature filaments
—–>TETRAMER
- The next level of organization is the formation of tetramers)
- 2 dimers assemble in an antiparallel (NH2 and COOH termini on opposite ends) staggered manner
- Since the dimers have again aligned lengthwise, the hydrogen bonding and future strength of the intermediate filament have further increase
- This newly formed tetramer is considered to be the fundamental building block of intermediate filaments
How do intermediate filaments assemble?
- The intermediate filament building blocks (tetramers) come together spontaneously in 3 stages to form filaments
—–> The FIRST step involves the formation of what is called a unit-length filament
- This is formed by 8 tetramers coming together (20 nm)
—–> The SECOND step is when unit-length filaments come together to form an immature filament
- These interact loosely end-to-end
—–> The THIRD step is when the immature filament compacts to form a mature filament
- This is the final step to create a fully assembled intermediate filament
what is the post-translational modification of intermediate filaments?
- Post-translational modifications control the shape and function of intermediate filaments, just like they do for other proteins
- These filaments can be modified by all types of post-translational modification, such as phosphorylation and glycosylation
—> PHOSPHORYLATION: the addition of phosphate groups
—> GLYCOSYLATION: the addition of sugar groups
- Such modifications typically occur in the head and tail domains of the intermediate filament subunit proteins
- Although it is known that intermediate filaments undergo post-translational modification, an understanding of the consequences of such modifications remains unclear
- Overall, phosphorylation leads to the dissolution of an intermediate filament into unit-length filaments, and when these phosphates are removed by enzymes called phosphatases, the intermediate filaments will spontaneously reform
- The disassembly and assembly is important during cellular processes such as cell division
- Prior to cell division, the cytoskeleton collapses as the cell is partitioned into 2 cells
- After division, the cytoskeleton reforms
what are the 3 main types of specialized intermediate filaments?
—–> LAMINS
- A type of intermediate filaments found solely in the nucleus, that forms the nuclear matrix, a dense network to protect chromatin
—–> DESMINS
- A type of intermediate filament that does not form long, thin filamentous structures, but more so connects different cellular structure together
- It is important for muscle structural integrity
—–>KERATIN
- An important intermediate filament that binds to desmosomes to form a complex
- Keratin makes up your hair, skin, and nails
what are microtubules and what are their primary purpose?
- The primary purpose of microtubules is cellular trafficking
- Trafficking is the movement of proteins, vesicles and some cellular organelles within the cytoplasm
- A very important concept to note is that these movements are not random within the cytoplasm
The microtubule network defines how things are trafficked throughout the cytoplasm and they create specific routes by which their cargo can travel - Travel can be bi-directional along a single microtubule and the cargo can attach or detach anywhere along its length
- This intracellular distribution network determines where things move within a cell and can be assembled or disassembled to create or remove routes, respectively
what are microtubule organizing centers?
- In contrast to intermediate filaments, the assembly of microtubules is more organized and does not occur spontaneously
- Microtubule assembly requires many proteins and occurs in regions called the microtubule-organizing centres (MTOCs)
- MTOCs are the cellular structures from which microtubules arise
- Depending on where the microtubules need to be assembled, they can be at different locations within a cell
- An example of an MTOC is the centrosome
- The centrosome is located near the nucleus of the cell, and during cell division it is copied so that the two resulting centrosomes can form the poles of the mitotic spindles
what is the protein structure of microtubules and what are they composed of?
- Microtubules are made of specific proteins called tubulins
- Like intermediate filaments, they are composed of DIMERIZED PROTEINS
- These tubulins represent a very large family of cellular proteins with many different functions
- We will focus on 2 specific tubulins: alpha-tubulin and beta-tubulin
- Alpha-tubulin and beta-tubulin are both globular (glob-like in shape) proteins with similar shapes, that can bind very tightly together in a head-to-tail fashion to form a dimer
- Both tubulin proteins bind to a GTP molecule, and beta-tubulin can cleave its GTP to GDP
When bound to GDP, beta-tubulin has a shape change
what is the process of microtubule polymerization?
- The formation of microtubules from alpha and beta tubulin-dimers is very dynamic
- If the polymer made from individual tubulin dimers can reach a critical length, it will continue to grow
—–> Dimers form polymers
- Dimers will spontaneously assemble into unstable polymers that can quickly fall apart
—–>Polymer growth
- Once a polymer of at least 6 dimer subunits form, it is more stable and it may grow laterally and longitudinally (PROTOFILAMENT)
—–>Protofilament tubes
- Eventually, protofilaments will form a sheet and will assemble into a tube of 13 protofilaments
- This is the nucleation site for microtubule elongation
- Even in its tubular form, the microtubule is in a dynamic state of assembly and disassembly
—–>assembly/ disassembly
- At the ends of a microtubule, dimers continue to come and go
- If the rate of assembly is greater than disassembly, the microtubule grows
- Conversely, the microtubule shortens if disassembly occurs faster than assembly
what is the process of microtubule assembly?
- Recall, that an alpha-tubulin always has GTP bound to it, while beta-tubulin may have either GTP or GDP
- When GTP is bound to beta-tubulin, dimer polymerization is favoured and the dimers will attach to each other, aka→ assembly
what is the process of microtubule disassembly?
- When beta-tubulin’s GTP is hydrolyzed to GDP, the dimer undergoes a conformational change that promotes depolymerization, aka → disassembly