Pharm 410: Bio Membranes Flashcards
What should a pharmacist care about membranes?
Barrier for drug absorption and excretion and getting into brain Hold proteins and are critical for electrical signaling
What are the two classes organisms and what are they based off of?
Based off cell structure 1. Prokaryotes: no nuclear compartment 2. Eukaryotes: has nucleus
What are some characteristics of prokaryotes?
- no nuclear membrane (no nucleus) 2. No membrane bound organelles 3. Has a cell wall 4. circular chromosome EX: e coli, staph and strep
What are some characteristics of eukaryotes?
- Nuclear membrane surrounding genetic material (nucleus) 2. Numerous membrane bound organelles 3. Complex internal structure with cytoskeleton 4. much larger EX: Homo sapiens, Oryza sativa
What is the cytoplasm in the eukaryotic cell?
Everything inside the cell expect the nucleus
What is the cytosol within the eurkayotic cell?
The fluid portion of the cytoplasm (organelles). site of glycoloysis
What is the nuclear envelope of the eurkayotic cell?
Segregates chromatin (DNA + Protein) from cytoplasm
What is the plasma membrane of the eurkayotic cell?
Separates cell from environment, regulates movement of materials into and out of the cell
What are the ribosomes of the eukaryotic cell
Protein-synthesizing machines
What are the peroxisomes of the eukaryotic cell?
Degrade lipids using peroxides
What is the cytoskeleton of the eukaryotic cell?
Supports cell, aids in movement of organelles and cell (cilia and flagella)
What are the lysosomes of the eukaryotic cell?
Degrade intracellular debris
What are transport vesicle of the eukaryotic cell?
Shuttles lipids and proteins between ER, Glogi, and plasma membrane
What is the golgi of eukaryotic cell?
Process, packages, and targets proteins to other organelles or for export
What is the smooth endoplasmic reticulum (SER) of the eukaryotic cell?
Site of lipid, steroid, and triaclyglycerol synthesis. drug metabolism by CP450s happen here
What is the nucleus of the eukaryotic cell?
Contains the genes (chromatin) and is where DNA and RNA synthesis occurs
What is the nucleolus of the eukaryotic cell?
Site of ribosomal RNA synthesis
What is the rough endoplasmic reticulum (RER) of the eukaryotic cell?
Site of much of the protein synthesis
What is the mitochondrion of the eukaryotic cell?
oxidizes (oxidative phophorylation) to produce ATP. Has own DNA, site of citric acid cycle
What is the bacterial cell wall?
- Present in almost all prokaryotes 2. Composed primarily peptidoglycan 3. the cell wall forms a “mesh” around the cell providing structure
What type of peptidoglcan are most type of cell walls composed of?
Murein
What is peptidoglycan?
Complex construct of carbohydrates and amino acids
What is the cell wall of a gram positive bacteria?
- no outer membrane 2. much thicker peptidoglycan layer
What is the cell wall of a gram negative bacteria
- Outer membrane present 2. Much thinner peptidoglycan layer
What is the function of the bacterial cell wall?
- Maintains cell shape/integrity 2. Prevents lysis from extreme environmental conditions
What is the Structure of the bacterial cell wall?
- Backbone composed of carbohydrate polyermers 2. Backbone strands are crosslinked together by short peptide chains – unusual amino acids such as D-alanine and DAP 3. These result in structure that is rigid, yet flexible and porous “net” around the bacteria
What are the stages of Bacterial cell wall synthesis?
- Peptidoglycan dimer is synthesized inside cell wall 2. movement of dimer to the outside of the cell membrane 3. Peptidoglycan polymer synthesis 4. crosslinking by the enzyme transpeptidase
What is job of B-lactam antibiotics?
They inhibit (block) transpeptidase enzymes so crosslinking cant occur
What are some examples of B-lactams ?
- penicillins - Amox, Penicillin V 2. Cephalosporins - Cephalexin 3. Monobactams 4. Carbapenems
How does the inhibition of Transpeptidase by penicillin work?
The pocket of the bacteria that needs to be linked together by the side groups of penicillin such that hydrolysis by water cant happen. This makes transpeptidase being irreversibly inhibited, leading to no crosslinking to cell death
What does a bacteria do to have drug resistance?
The bacteria produces production of a B-lactamase enzyme which chemically degrades (destroys) the B-lactam drug
What are ways we have overcome the bacterial drug resistance ?
We targeted the B-lactamase enzyme Augmentin is a combo of B-lactam antibiotic and clavulanic acid – The clavulanic acids acts as an irreversible inhibitor of B-lactamase to prevent the cleavage and inactivation of the amoxicillin
What are the composition and architecture of membranes
- Composition of membranes varies between different membranes 2. Membranes form compartments (specialized environments) which are necessary for nearly all bio processes 3. Provide structural framework on which many enzymatic reactions occur 4. Membranes serve as a reservoir for a variety of signaling molecules allowing cell to receive external stimuli
What is the membrane composition of lipid membranes?
- Glycerophospholipids - most abundant 2. sphingolipids 3. cholesterol
What is the membrane of composition of protein membranes
- Peripheral 2. integral
What is the membrane composition of carbohydrate membranes?
*always attached to lipid or protein membrane 1. Glycolipids 2. glycoproteins
What are the two main components of lipid membranes?
Polar head group - hydrophilic Long nonpolar tails - hydrophobic
What does it mean if a membrane has an amphipathic nature of a membrane lipid?
The polar- nonpolar duality of the membrane. This is important because it allows them to form biological membranes
What is the amphipathic association in an aqueous environment?
Amphipathic molecules tend to associate non-covalently with on another - polar heads associate with water - non-polar tails associate with on another
How does amphipathic association lead to closed membranes?
Its energetically unfavorable to have hydrophobic tails surrounded by water, so there are lipid layers form closed structures
What is micelles?
Closed membranes Small spherical balls of lipids with only one polar surface and a hydrophobic core
What are liposomes?
Closed membranes Artificially-made vessicles with a hydrophilic core that are sometimes used for drug delivery - hydrophilic core
What are bilayers?
Closed membranes Two layers of lipids with the lipid tails in the middle of two polar layers formed by the polar head groups
What is the structure of a lipid bilayer?
Two sheets of lipids with on layer of polar head groups facing the aqueous exterior of the cell or vesicle with the other polar surface faces the aqueous interior. The nonpolar tails “sandwiched” in between ***Impermeable to almost all polar or charged solutes, permeable to most nonpolar compounds
Do the sheets of membranes need to be the same?
No, most studies that the inner and outer leaflets (polar hydrophillic ends) are different, asymmetric
What are fatty acids?
Simplest form of lipid Contains two components - carboxylic acid -Long non-polar tail - can be saturated with no double bonds or unsaturated with one or more double bonds to make kinks
What are the types of lipids?
Triaclycerols, storage form for lipids Phospholipids - glycerophospholipids account for 40-60% of content in bio membranes Glycolipids (carbohydrates attached) Steroids (cholesterol)
What is important about triacylglycerol?
- Have glcyerol backbone, three fatty acids and no phosphate 2. named triglycerides 3. Most abundant class of lipids in the body 4. NOT significant component of cell membranes 5. Function is primarily as energy reservoirs for the cell
What is important about phopholipids?
- can be either glycerophospholipids or sphingophospholipds 2. have three main components - One or two fatty acids - Backbone (glycerol) or sphingosine 3. Phosphate molecule with an optional polar head group attached
What is important about glycerophospholipids
- Have three main components - glycerol backbone - two fatty acids - phosphate group with optional polar head group 2. Account for 40-60% of content in bio membrane 3. The FA group provide diversity because they can be either saturated or unsaturated
What is the simplest glycerophospholipid?
Phosphatidic acid
What is important about sphingolipids?
- Three main components - Sphingosine backbone - One FA linked as an amide to sphingosine - Polar head group (with or without phosphate) 2. Account for 10-20% of bio membranes 3. very common in myelin sheath 4. if you attach a saccharide group (sugar) it becomes glycosphingolipids
Whats the simplest sphingolipid?
Ceramide
Whats important about Cholesterol?
- Important component of bio membranes and is the most abundant steroid in animals -30-40% of bio membranes 2. Only slightly amphipathic and is rigid, not hydrophilic enough to form a bilayer 3. Its presence in a membrane increases the membranes overall rigidity
What are the two nonlipid protein components of membranes?
-Peripheral membrane proteins - Integral membrane proteins
What are Peripheral membrane proteins?
Proteins which are only temporarily associated with the membrane - Held there by electrostatics or hydrogen binding -can have lipid anchors (b-subunits, G-proteins)