Personalised Medicine Flashcards

1
Q

Define pharmacokinetics

A

Relationship between drug administration and exposure to drug

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2
Q

Define pharmacodynamics

A

Relationship between exposure to drug and effect:
• “dose(concentration) -response
relationship”
• duration of exposure

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3
Q

What is the traditional approach to drugs?

A

Diagnosis of disease leads to the recommended drug

Clinical trials are undertaken of a heterogeneous population of patients

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4
Q

What is the personalised approach to drugs?

A

Diagnosis of the disease leads to the molecular characterisation of factors that affect the drug in individual patients leading to a recommended drug
Clinical trial data from patients with the actual disease and various molecular characteristics

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5
Q

What are the types of markers and what do they do?

A

Diagnostic markers
– eg tumour subclasses – eg different lymphoma subtypes
Prognostic markers
– eg predict whether additional chemotherapy likely to be beneficial (“treat versus no-treat decision”)
Predictive markers
– predict response to drug – patient selection
– “pharmacogenomics”
Pharmacodynamic markers
– measure response to drug

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6
Q

What can be used as biomarkers?

A

DNA – “genomics”
– whole genome: sequencing
– individual gene polymorphisms: eg genome
hybridization, SNPs

mRNA “transcriptomics” (and microRNA ?)
– whole transcriptome: expression arrays
– individual gene: eg PCR

protein expression “proteomics”
– whole proteome: protein arrays, 2 D gels
– Individual proteins: eg proteins eg ELISA,
immunohistochemistry, mass spectroscopy

metabolomics

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7
Q

What are synonymous SNPs?

A

Both alleles of a gene encode the same polypeptide

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8
Q

What are non-synonymous SNPs?

A

The alleles encode a different polypeptide

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9
Q

How does Illumina work?

A

Chain termination – similar concept to Sanger method
Terminating nucleotide is fluorescently labelled
Fluorescence identified which nucleotide added
Termination can be reversed

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10
Q

How does Hercrptin work?

A

It inhibits Her2 receptors but it only affects Her2 positive tumours

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11
Q

What is cetuximab and how dies it work?

A

Cetuximab – monoclonal antibody inhibiting EGF-R
Cetuximab recommended for treatment of colorectal cancer
Only for patients with wild-type ras
Patients with mutated (activated) ras don’t respond to cetuximab

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12
Q

What is gefitinib and how does it work?

A

Gefitinib – inhibitor of EGF-R kinase
EGF-R is mutated in a subset of NSCLC patients
mutation activates the receptor
Gefitinib licensed for NSCLC patients with positive EGF-R mutation status

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13
Q

What is maraviroc and how does it work?

A

HIV entry into T cells requires CD4 and either CCR5 or CXCR4 co-receptors
Maraviroc inhibits HIV binding to CCR5 co-receptor but not to CXCR4
Not used for patients with HIV strains that bind CXCR4

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14
Q

What issues are associated with personalised medicine?

A

•Scientific & technical
– Appropriate biomarkers needed for each drug & clinical data to confirm their success
– $1000 genome
• Regulatory
– approval of these data for decision making
• Logistical - how to implement personalized medicine?
– Longer time diagnosis→ prescribe
– more physician (GP, specialist etc) visits?
• Financial issues
– Cost of diagnostics added to cost of drug
– Smaller markets for each drug = increased cost of drug
• Although markets may not be smaller –we don’t know yet
• Eg could we use herceptin for all HER2 positive cancer not just breast cancer ?
– But savings by reducing “wasted therapy” & better outcomes?
• Legal
– privacy issues pertaining to genetic data

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15
Q

What may happen if elimination is slow?

A

Exposure to the drug may lead to toxicity

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16
Q

What may happen if elimination is fast?

A

The drug may not have the desired effect

17
Q

What does phase 1 metabolism achieve?

A

Conversion to more reactive form to allow conjugation

18
Q

What does phase 2 metabolism achieve?

A

Conjugation with another biomolecule to increase solubility to allow excretion

19
Q

What are the causes of patients with reduced 2D6 P450 activity?

A

Allele encodes enzyme with compromised catalytic activity

Deletion of gene

20
Q

What are the characteristics of a patient with reduced 2D6 activity?

A

Increased response to drugs that are metabolically inactivated by 2D6 (eg nortryptyline)
Decrease response to pro-drugs that are activated by 2D6 (eg codeine, tamoxifen) –2D6 genotype can influence survival of breast cancer patients receiving tamoxifen.

21
Q

What are the characteristics of a patient with increased 2D6 activity?

A

multiple copies of 2D6

“ultrarapid metabolizers”

22
Q

What are the characteristics of Butyrylcholine esterase encoded by G209?

A

More rapid degradation of suxamethonium so less effective muscle relaxant

23
Q

What are the characteristics of Butyrylcholine esterase encoded by A209?

A

Slow degradation of suxamethonium so potential prolonged paralysis

24
Q

What is Isoniazid used to treat? What is it’s major ADR?

A

Used to treat Tuberculosis

Major ADR is peripheral neuropathy

25
Q

What is Isoniazid metabolised by?

A

N-acetyl Transferase

26
Q

What are the characteristics of fast and slow acetylators?

A

Fast: Patients efficiently metabolise Isoniazid
Slow: Patients slowly metabolise Isoniazid and are at increased risk of peripheral nerve damage

27
Q

What are the characteristics of 6-mercaptopurine?

A

It is used as cytotoxic chemotherapy for leukaemia by inhibiting the synthesis of purine nucleotides
It has a narrow therapuetic window
Its major ADR is myelosuppression
It is metabolised by TPMT

28
Q

What are the two variants that substantially reduce Cyp

enzyme activity with warfarin?

A

Arg144Cys

Ile358Leu

29
Q

What is VKORC and what does it do?

A

Vitamin k epoxide reductase
Target of warfarin
Different alleles encode variants of enzyme with different sensitivities to warfarin

30
Q

What is Warfarin metabolised by?

A

CYP 2C9

31
Q

What is the mode of action of cisplatin, carboplatin and oxaliplatin?

A

Platinum based compounds used as chemotherapy for

cancer which platinate DNA and prevent replication

32
Q

How are cisplatin, carboplatin and oxaliplatin cleared?

A

Conjugation to glutathione

33
Q

What are the significant polymorphisms of Glutathione S transferase?

A

There are >8 isoforms of GST
The genes encoding these may have no, one or both allele deleted
Each allele may have several SNPs

34
Q

How are genome wide studies carried out?

A
  1. Clinial trial subjects receive the drugs and patients are split into responder and non-responders
  2. Genome wide comparison is carried out of the DNA of responder and non-responders
  3. Key genetic differences that are associated with the response are identified
  4. These factors are confirmed in a second cohort
  5. This identifies a clinical useful biomarker
35
Q

What are the characteristics of the OATP1B1 T521C SNP with statins?

A

C at 521 impairs uptake into hepatocytes (site of action of statin)
Greater AUC
Greater accumulation of drug in muscle tissue
Both alleles need to be affected (i.e. C)for significant myopathy