Patterning Drosophila Embryo Flashcards
Patterning
Differences between cells getting established
Drosophila early embryo basic
Egg formed in mother ovary
Fertilised
Laid
First just a single nucleus
Then just nuclear division
Within 60 minutes a pop of nuclei has formed
Then by 90 mins they have migrated out to the edge
Then at 150 mins - the syncytial blastoderm with the nuclei lining the outer edge of the syncytium
Then the beginning of cell formation by infolding of the membrane
Pole cells towards posterior form first
Go on to form germ cells
Cell layer forms around the surface
Opaque yolk in the centre
Different cells along ap axis form diff segments
What part of embryo gastrula yes
Strip on the ventral side gastrula yes and forms the inner mesoderm
Most of rest makes ectoderm
Except for gut ectoderm at each end (A and P)
Strip along dorsal makes serosa
Segment identities are already established by 3hrs
AP axis patterning mutants
2 diff classes of mutants
Zygotic effects
Mutant embryo is abnormal
Genes involved are needed to be functional in the embryos cells
Maternal effect genes
Needed functional in mother to produce normal embryo
Mother with mutation makes affected embryo even if embryo has functional copy
Gene function needed during oogenesis
Classes of maternal effect gene mutations
Anterior end affected
Posterior end affected
OSKAR and NANOS mutants
Mother with these mutations
Make egg that gives embryo with no posterior patterning
Needed for posterior patterning in embryo
BICOID mutant
Bicoid mutant mother gives embryo with no anterior patterning
Bicoid functional needed from mother to pattern anterior patterning
Patterning cells in drosophila oogenesis
Ovary in mothers abdomen
Consists of parallel ovariole tubes
Each ovariole is independent of neighbouring ones
In tube oocyte safe produced sequentially
Mature as they move along tube and are laid when mature
Oocyte is not alone
It is accompanied by other cells
-stem cells at proximal end
-produce cells called egg chambers
-each egg chamber consists of large oocyte surrounded by layer of much smaller follicle cells
-at proximal end of egg chamber there is 15 supporting nurse cells
-as egg natures follicle cells produce shell and nurse cells die
Patterning of the oocyte
Occurs by interaction of adjacent egg chambers in tube
Produced sequentially so each chamber has an older sister in front of it
At particular stage the older sister produces a signal
Received by follicle cells on nearest side of younger sister (the egg oocyte end of chamber)
Changes their expression
At later stage a reciprocal signal comes from these follicular cells
This signalling causes MTs to be arranged correctly in the oocyte
These two phases of signalling are necessary for MT arrangement to happen in oocyte
AP axis patterning is dependent in it
Differences between the three cell pops in the egg chamber
Oocyte is big
Stuffed w yolk and maternal gene products
Oocyte is inert and doesn’t transcribe it’s own genes just receives material produced by cells around it
Follicle cells put yolk in the oocyte
Nurse cells are polyploid and polythene - for producing gene products to be put into oocyte
Follicle and nurse cells contribute to oocyte development and die off
MT polarisation in oocyte and it’s patterning contributions
Plus end (where additional subunits are added) is oriented away from nurse cells - pointed towards older sister direction
Minus ends towards nurse cells
Parallel orientation
Kinesics travel to plus end
Dyenins to minus
maternal Gene products given to the oocyte travel along them
OSKAR RNA is transcribed in nurse cell
Carried to plus end by kinesin and builds up at this future POSTERIOR end of the oocyte
OSKAR RNA localisation consequences
Comes into oocyte early
Carried by kinesin to plus end
OSKAR protein translated
Binds NANOS RNA when it comes in
Sets up future posterior end of embryo
BICOID RNA in oocyte
After OSKAR stuff
BICOID RNA from nurse cell binds dyenin
Transported to and enriched at plus end
So is shunted back to minus end nearest nurse cells
Sets up future development of anterior end
Patterning AP of early embryo - ANTERIOR
BICOID rna is localised to this end
It is tethered by cytoskeleton components
Then at about 60mins after laid
Begins to be translated into bicoid protein
RNA tightly tethered but protein is not
Protein produced locally but can diffuse through syncytium common cytoplasm (has only been nuclear division)
This sets up a gradient of bicoid protein conc across ap axis
High conc at ant
Fades into background by about halfway along axis
-because bicoid protein is unstable
- it is produced locally at anterior
-diffusing away
-gradually breaks down as it moves away
-so get stable gradient of bicoid as go along axis
Bicoid properties
Protein is a TF
Controls set of genes
Maternal product TF
Need a lot of Bicoid to turn on Otd
So gradient causes Otd to turn on in anterior half of embryo
The. At lower bicoid conc hunchback is turned on partway through axis? Still in anterior half?
Is still a syncytium so these zygotic products can diffuse out and create gradients in common cytoplasm
Bicoid had consequences on spatial localisation of products
Turns on many targets along axis
This is beginnings of process that subdivides the ap axis of segment identity
Bicoid protein interaction w maternal RNA (caudal eg)
Is able to bind maternal RNA molecules
Maternal Caudal TF RNA binds to bicoid protein where bicoid protein is
And is degraded when it binds
So bicoid protein presence causes degradation of maternal caudal rna
So caudal can’t be present anteriorly
Only posterior?
Patterning embryo posterior - OSKAR and NANOS
OSKAR RNA localised to post of egg
OSKAR protein binds NANOS RNA
Localised NANOS RNA to the posterior
About an hour where NANOS protein is translated and diffuses from anterior
Binds posterior maternal hunchback and causes it’s degradation
Hunchback RNA IS DISTRIBUTED UNIFORMLY
But since NANOS protein in posterior
It is degraded there
Two hunchback RNA stages
Maternal hunchback RNA comes into oocyte and is degraded in posterior by NANOS protein
Then is turned on in anterior (zygotically) by Bicoid protein activity
Gradients in patterning - syncytium vs multicellular environment
In the syncytium
Eg with bicoid
Have bicoid maternal rna localised in anterior
Then protein is only produced in that localised area
Is unstable so diffuses out and breaks down as it moves ooht
Sets up a gradient in the anterior of the oocyte
Has consequences in transcription along the axis
Typically it is different in multicellular environments
Secretion of signal
Causes gradient in extracellular space across the cell surfaces
Different response thresholds in diff cells
So cells respond differently across the gradient
AP axis divisions
Segments
Repeated anatomical units, developmental modules
Simple way of building body complexity
Segments in larva not massively different
But in adult there are many
Segment grouping
Tagmata
Eg
Head
Thorax
Abdomen
Head segments fuse together in drosophila adult and lose a lot of distinct look
when is drosophila body plan determined?
in development of egg
already halfway through embryogenesis (~10hrs) embryo looks v segmented
so body plan already somewhat determined before this
adult structures origin basic
adult doesnt form directly from larva (ie larva doesnt just sprout legs/wings and many larval segments dont correspond to adult ones
adult built somewhat from scratch
larval
larval skin becomes pupa outside
parts of larval tissue in each segment bud off and retain fate becoming the imaginal discs
stay proliferating in larva until it pupates and become adult structures within the pupa
adult segments are given their identity during this stage (stage 13 11hrs in)
gap gene regulation basic
done by morphogen gradients
protein gradients in early embryo revision
bicoid rna anterior side of oocyte
posterior - nanos RNA
hunchback and caudal generally distributed
bicoid and nanos mRNA translated into protein at respective ends
proteins form gradients across AP axis
maternal caudal mRNA translation inhibited by bicoid protein in anterior - so gradient of nanos and caudal from posterior
other way around with hunchback - mRNA translation inhibited by nanos in posteior - forms gradient from anterior
these gradients give the nuclei in the syncytial blastoderm info about their position along the AP axis
act as morphogens and affect zygotic expression of nuclei differently across the AP axis
bicoid maternal gradients to zygotic gene activation revision
bicoid (in anterior) activates Otd and Hunchback zygotic expression (different from maternal hunchback from earlier)
Otd has a higher threshold so is expressed in nuclei only in the VERY anterior end
Hunchback has a lower threshold for bicoid levels so is activated further along the AP axis from anterior
now there is already a difference between very anterior and further less anterior (Otd+Hb and just Hb further down)
gap genes basic
their expression results in patterning of the embryo
from A to P
knirps
hb
giant
kruppel
knirps
giant
hb
tailless
gap gene expression in cells of embryo reflect their AP position “positional info”
gap gene mutants
mutating a gap gene causes a “gap” in the body plan along the AP axis - the gap gene domain is missing
kruppel necessity
is required for thorax segments
mutant gives gap in thorax - head stuck onto abdomen
knirps necessity
required for but further posterior - mutant gives large chunk of abdomen missing
Kruppel and hunchback interaction
kruppel inhibited at high Hb conc
is activated at a lower one
hence its expression in future thorax region
Knirps gap gene regulation
is activated by caudal coming from posterior
inhibited by hunchback from anterior
is active just behind kruppel
cant activate further posterior even tho caudal is higher there as - Tail-less inhibits its expression there
so only activates just where caudal is high enough but its repressors from posterior are low enough
gap gene refinement - cross-regulation
early on a lot of the gap gene domains overlap
but they cross regulate - try to inhibit each other
ends up with dynamic change from fuzzy broad domains to v precise domains of expression
gap gene summary basic
divide ap axis into domains
next step - gap gene products are TF factors that regulate
-segment formation
-segment identity
what genes do gap genes regulate?
pair-rule genes