Pathogenesis Flashcards

1
Q

Viral pathogenesis:

A

Viral pathogenesis
the mechanism by which viruses cause disease
series of events that occurs when a virus infects the host
Interplay of viral & host factors, which determines
the nature of infection,
whether disease occurs
the severity of disease

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2
Q

Intro:

A

Viruses are obligate parasites which must infect cells in order to replicate. This process may result in cell death and dysfunction. The host responds by attempting to rid itself of the virus and the infected cells. Both the viral infection and the host response may contribute to the disease process. The outcome of the infection depends on the balance between viral and host factors.

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3
Q

Viral Infection:

A

Viral Infection refers to the process by which viruses enter the body, spread to various tissues, localize to target organs, replicate themselves to high levels, and are then shed in order to infect a new host.

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4
Q

Fundamental questions of viral pathogenesis:

A

How does a virus enter the host?
What is the initial host response?
Where does primary replication occur?
How does the infection spread in the host?
What organs & tissues are infected?
Does it cause disease?
What is the mechanism of disease?
Is the infection cleared from the host or is a persistent infection established?
How is the virus transmitted to other hosts?

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5
Q

How does a virus enter the host?

A

The natural reservoir is the habitat in which an infectious agent is naturally found and replicates. Reservoirs include humans, animals, and the environment. The reservoir may or may not be the source from which an agent is transferred to a host.

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6
Q

Transmission routes:

A
  • A particular virus will have a specific site which is the preferred entry route, some viruses have >1 entry route
  • Viruses are able to enter the body at a particular site, only if the cells have receptors to which the virus can attach
  • Viral properties influence the way they are transmitted
  • Viruses may or may not cause disease at site of entry, may cause disease at a distant site
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7
Q

Notes on transmission routes:

A

Viruses need to be able to spread from one host to another in order to survive. Often, organisms use the same portal to enter a new host that they use to exit the source host. Some viruses such as rotavirus, hepatitis A and enteroviruses, secreted in human faeces, are very resistant and can survive for many weeks in the environment. Other viruses such as HIV and many paramyxoviruses are quickly inactivated by drying out and need close contact between humans to be transmitted. The second factor influencing transmission mode is the place where the virus replicates and the amount of virus in a specific compartment: HIV is found in blood and lymphoid tissue and genital secretions, whereas paramyxoviruses are found in respiratory secretions and droplets – thus explaining their different routes of transmission.

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8
Q

The different transmission routes:

A
Horizontal vs vertical
Direct vs indirect
Direct contact with infected secretions/lesions
Respiratory droplet – coughing, sneezing
Airborne 
Faecal-oral
Sexually transmitted
Arthropod vector – mosquitoes, ticks
Fomites – via inanimate objects
Blood borne – needle stick, blood transfusion
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9
Q

Notes:

A

Notes:
Horizontal transmission - modes of transmission from person to person. Vertical transmission - transfer of infection between parent and offspring (mother to child – transplacental, intrapartum, postnatal, germline). In direct transmission, there is essentially immediate transfer of the agent from a reservoir to a susceptible host by direct contact or droplet spread. Direct contact occurs through kissing, skin-to-skin contact, and sexual intercourse. Droplet spread refers to spray with relatively large, short-range aerosols produced by sneezing, coughing, or even talking. Droplet spread is classified as direct because transmission is by direct spray over a few feet, before the droplets fall to the ground. In indirect transmission, an agent is carried from a reservoir to a susceptible host by suspended air particles or by animate (vector) or inanimate (vehicle) intermediaries. Airborne transmission is by particles that are suspended in air. Droplet nuclei are the residue of dried droplets. The nuclei are less than 5 μ (microns) in size and may remain suspended in the air for long periods, may be blown over great distances, and are easily inhaled into the lungs and exhaled. The route of transmission of many enteric (intestinal) pathogenic agents is described as “faecal oral” because the organisms are shed in faeces, carried on inadequately washed hands, and then transferred through a vehicle (such as food, water, or cooking utensil) to the mouth of a new host. Most vectors are arthropods such as mosquitoes, fleas, and ticks. Viruses that are adapted for a part of their life cycle in a vertebrate host and another part in an arthropod are called arboviruses. These viruses replicate in both the arthropod host (usually in the salivary glands) and the vertebrate host with the arthropods (insects or arachnids such as ticks) transmitting these viruses from the one vertebrate host to the other. Vehicles that may indirectly transmit an agent include food, water, biologic products (blood), and fomites (inanimate objects such as handkerchiefs, bedding, or surgical scalpels).

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10
Q

What is the initial host response? {Where does primary replication occur?
How does the infection spread in the host?
What organs and tissues are infected?}

A

Local infection:
Localised infection - virus infects the cells at the site of entry & replicates there, spreading to neighbouring cells, but not into the blood, does not spread to the rest of the body
No viraemia occurs, few or no antibodies are detected in the blood
Respiratory & intestinal infections - rapid replication, short incubation period

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11
Q

Local infection examples:

A

Viral respiratory tract infections eg. rhinovirus, influenza
Viral conjunctivitis eg. adenovirus, enterovirus
Viral gastroenteritis eg. rotavirus, norovirus
Viral skin infection eg. HPV, molluscum contagiosum

Examples of localised infection include rhinovirus infection, which replicates locally in the respiratory tract, but not systemically.

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12
Q

Systemic infection:

A

The virus usually replicates locally (usually in the mucous membranes) for several days, then drains into the local lymph nodes via the lymphatic system
In the lymph node it replicates again, then released into the blood – primary viraemia
Spreads throughout the body & replicates in permissive organs & tissues - high concentration of virus produced, which then enters the blood - secondary viraemia
Spreads to target organs (eg. the skin in the case of varicella) - in this period the typical clinical picture of the disease usually presents
Secondary viraemia elicits a significant immune response to control the infection

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13
Q

Notes on systemic infection:

A

The period when the virus is still replicating in the local mucosae is also known as the eclipse period, or the viral eclipse. In the case of mumps and rubella, immune response usually effective; in the case of HIV, the immune system does not eliminate the virus from the body.

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14
Q

Local vs Systemic infection:

A

The initial entry into the bloodstream is known as the primary viremia. Once in the bloodstream, the virus is then able to reach various organs primarily RES eg liver, lung and kidneys. The virus replicates further in these organs and re-enters the bloodstream at a much higher level. This is known as the secondary viremia. The virus at high levels is then able to infect the target organ. The virus is shed so that it may infect a new host.

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15
Q

Systemic infection:

A

Faecal oral transmission and respiratory droplet transmission. The initial sites of virus replication include both the pharynx and intestine. Spread to lymph nodes then primary viremia. Replication in organs such as liver/spleen gives rise to secondary viremia with spread to target organs such as CNS for polio.

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16
Q
Does it cause disease?
Which factors are associated with the development of disease 
following viral infection?
Viral factors
Host factors
A

Host Factors:
Major role in viral pathogenesis
affect host susceptibility, example
Genetic factors, age, gender, medical history, current infections, behaviour, environmental factors
Affect severity and risk pf complications, example:
Age – very young & very old at higher risk
Immunodeficiency
Primary
Certain congenital immunodeficiency states that affect T-cells &/ antibody production eg. severe combined immunodeficiency (SCID) - ↑ susceptibility to certain viral infections
Secondary
Pregnancy

17
Q

Notes on susceptibility:

A

people are not equally susceptible to a particular infection. Some people have inborn genetic conditions that make them susceptible to a wide range of conditions. This is referred to as congenital immunodeficiency.

18
Q

Host factors:

A

Acquired causes of immunodeficiency
infective (eg. HIV, HTLV – chronic immunodeficiency, measles – temporary immunodeficiency)
non-infective (eg. pregnancy diabetes, malignancy, immunosuppressive therapy, malnutrition)
Genetic factors
Example: Resistance to specific infections eg. people who are homozygous for a certain polymorphism in the CCR5 receptor (a co-receptor used by HIV), Δ32 deletion - highly resistant to HIV infection

19
Q

Viral factors:

A

Virulence - capacity of a virus to cause disease
Virulent viruses cause disease in a greater proportion of infected hosts & cause more severe disease than viruses of lower virulence
Virulence comes in many forms – rapid death (eg. Ebola), cancer which takes years to develop (eg. HPV), organ failure (eg. cirrhosis from hepatitis B & C)
Cannot compare virulence of different viruses
Virulence determinants – replication efficiency, tropism, host response, interactions between virus & host
Major goal of virology is to identify viral & host genes that determine virulence
Viral virulence genes - determine tropism, invasiveness, replication, viral spread, immune modulators (interfere with antigen presentation pathway, inhibit apoptosis, inhibit antiviral response)

20
Q

Notes on virulence:

A

To avoid biases inherent in comparing different types of disease, virulence is properly used to compare the disease-inducing capacity of related viruses, such as different strains of the same virus. For example, Ebola Reston, which is not associated with human disease, is less virulent in humans than Ebola Zaire. Virulence is determined by the capacity of a virus to grow, be invasive, infect vulnerable cells, evade the immune system, subvert cellular processes, and cause tissue damage. These capacities are encoded in the viral genome, by alleles of individual virulence genes.

21
Q

Viral factors - Tropism:

A

Tropism - capacity of a virus to infect or damage specific cells, tissues, or species
The spectrum of tissues infected by a virus eg. hepatotropic, neurotropic
Virus will infect a cell only if :
- cells have receptors for that virus
- cells are permissive for replication of that virus

It is a fundamentally important contributor to viral pathogenesis and virulence, as the capacity to induce disease depends on the cell and tissue infected. For example, a neurotropic virus such as rabies or polio can cause encephalitis or paralysis, whereas a virus with tropism for CD4 T cells such as HIV causes immunodeficiency.

22
Q

Viral diversity and variation:

A

*Higher error rate with RNA viruses – lack of proofreading eg. HIV
Mutations, recombination, re-assortment

  • Viral quasispecies - mixture of viruses present in the host at a given time
  • Some mutant viruses may have a survival or fitness advantage
  • The nature of the selective pressures & the pathogenic potential of the selected mutant viruses - important determinants of viral pathogenesis
23
Q

What is the mechanism of disease?

A

Disease Pathogenesis:
Disease - harmful pathologic consequence of infection
In many cases - infection harmless to the host & does not result in disease
Disease is the result of damage to the host cell by two mechanisms - by the virus itself (cytolytic viral replication, cell dysfunction/death) or by immune mediated mechanisms (immunopathology)

24
Q

Direct viral damage:

A

Viral replication can damage & kill the cell directly
Viral cytopathic effects
= characteristic changes in cells induced by viruses e.g. ballooning, inclusion bodies, syncytia
Direct killing of cells by viruses
viral subversion of cell metabolism for replication
cell-intrinsic programmed cell death pathways eg. necrosis, apoptosis
Eg. rabies virus kills neurons in the absence of extensive inflammation

25
Q

Notes on viral inhibition:

A

Viral inhibition of host protein and RNA synthesis, leads to loss of membrane integrity, leakage of enzymes from lysosomes, cytoplasmic degradation.

26
Q

Immune mediated clinical manifestations:

A

The Immune response is an essential part of the pathogenesis of many viral infections
Infiltration of leucocytes & macrophages with release of cytokines & inflammation
Common signs eg. fever, erythema, lymphadenopathy, rash, arthropathy commonly immune mediated
In some viral diseases, the cardinal manifestations are due to the immune response
E.g. respiratory viral infections with cytokine storm like influenza/rhinovirus,
E.g. parvovirus B19
E.g. erythema infectiosum,
E.g. liver inflammation in viral hepatitis

27
Q

Virus - induced immunopathology:

A

T-cell mediated tissue damage
cytotoxic T cells attack virus-infected cells
eg. acute hepatitis B clearance is associated with liver damage
Antibody binding to infected cells
attracts NK cells &/ triggers complement-mediated cell lysis
Antigen-antibody complexes deposited in small vessels in skin, joints, kidney etc., causing an inflammatory reaction
eg. extrahepatic manifestation of glomerulonephritis in chronic hepatitis B & C
Autoimmunity
virus antigens elicit an immune response to self proteins due to cross-reactivity or molecular mimicry
eg. postinfectious encephalomyelitis, Guillain-Barre syndrome, viral myocarditis

28
Q

Note on Virus - induced immunopathology:

A

Whereas the immune response can be beneficial without harming host cells, in other cases, the more harmful face of the immune system is prominent & tissue injury is associated with immune mediated clearance of infection

29
Q

Notes on Virus - induced immunopathology: Auto - immunity

A

For post-infectious encephalomyelitis, the disease is due to immunopathology thus the virus that triggered the disease would not be present in CSF.

30
Q

Is the infection cleared from the host or
is a persistent infection established?
Notes on the patterns of infection:

A

Acute infection virus infects a susceptible host and is cleared or eliminated by the host immune response.
Chronic or persistent infection is the continuation of infection beyond the time when the immune system might be expected to clear acute infection.
The process of re-initiating a productive infection cycle from latency is termed reactivation.

31
Q

Acute primary infection:

A

Occurs when a virus 1st infects a susceptible host
Initially innate immune response & then adaptive immune response (cellular & humoral) responsible for viral clearance
IgM appears 1st, usually disappears after the acute infection
IgG appears after IgM, persists for long periods, most lifelong
Symptoms usually coincide with the period of viral replication, usually subside after virus cleared
Example: measles, mumps, rubella

32
Q

Acute secondary infection:

A

When re-infection occurs with the same virus - immune system able to rapidly respond due to immune memory
Viral replication suppressed more quickly than with a primary infection
Symptoms often absent/milder than with a primary infection

33
Q

Notes on acute secondary infection:

A

It should be noted that with some acute infections, such as influenza, one strain may not provide optimal immunity against another strain, and re-infections may present in the way primary infections do. The extent to which the immune response to one virus is protective against a related virus and the extent to which immune memory is able to prevent symptoms with a re-infection both depend on the virus in question. In some cases, re-infection with a related strain leads to worsening of symptoms, or different symptomatology, such as with Dengue virus infection, where immunity to one strain enables the replication of other strains via uptake into monocytes; the virus therefore replicates by antibody mediated enhancement of infection.

34
Q

Chronic infection:

A

Viruses have various strategies to evade the immune response
Some viruses cause chronic infection in all hosts eg. herpesviruses, HIV
In some individuals the host immune response is inadequate in clearing the infection eg. higher risk of chronic hepatitis B in neonates & children than adults
2 primary mechanisms for establishment of chronic infection - continuous replication, establishment of latency
Continuous replication – eg. chronic hepatitis B & C
Latency – absence of replication during inactive periods with periods of reactivation - herpesviruses (eg. HSV, VZV, CMV, EBV), polyomaviruses (eg. JC, BK virus)
Latency & continuous replication – eg. HIV

35
Q

What is the important variable in viral pathogenesis?

A

A fundamentally important variable in viral pathogenesis is whether the immune system can clear a virus from the body.

36
Q

Notes on chronic infection:

A

To succeed via continuous replication, a virus must generate new infectious virions despite ongoing innate and adaptive immune responses. In cases where viral infection becomes chronic (Fig. 3) viral levels may vary and the degree to which symptoms are experienced may vary. Hepatitis B virus, for instance, may have occasional flareups of infection in addition to progressive liver damage, while HIV exhibits a slow disease progression.
Some individuals are unable to clear viruses that most people can clear, for instance rare cases of chronic poliovirus excretion or rubella virus in congenitally infected infants.

37
Q

Discuss what happens during latent viral infection.

A

During latent viral infection, the virus has a genomic and transcriptional strategy, often involving restricted viral gene expression, which allows the genome to survive even when lytic replication is not occurring. Examples include the proviral form of retroviruses or the circular episomal form with selective expression of viral genes observed for herpesviruses such as Epstein-Barr virus (EBV) and herpes simplex virus (HSV).
Often, latently infected cells express no viral proteins, making latency immunologically silent. This is the ultimate form of immune evasion, as the host has no known mechanisms for sensing the presence of the virus. To survive and spread from the latently infected cell, the virus must be able reactivate and reinitiate the lytic cycle of gene expression, potentially generating antigens that the immune system can respond to.

38
Q

Latency:

A

Virus able to persist indefinitely in the host
Genome persists but no virus particles are made
Limited expression of non structural genes:
- Shut down host genes
- Maintain latent state
- Replicate genome or immortalise the cell
Intermittent reactivation & replication required to maintain latency & to spread from host to host

39
Q

Quote on viruses:

A

“An efficient virus kills its host.
A clever virus stays with it.”
James Lovelock