Passive Transport Flashcards

1
Q

Define aquaporins

A

integral membrane proteins that contain channels that only allow the passage of water molecules through them

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2
Q

T or F: aquaporins let water and ions through their channels

A

FALSE

Aquaporins are specific to water

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3
Q

What kind of cells would have many aquaporins?

A

Ones that have to secrete or move a lot of fluid

such as

cells lining the ducts of exocrine glands (ex. sweat glands)

kidney cells

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4
Q

Describe the structure of aquaporins

A

The channel is made of alpha helices and has a narrow pore that is lined with POLAR amino acids allowing water to travel through SINGLE FILE

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5
Q

How does water move through an aquaporin?

A

the narrow pore in a channel is lined with polar amino acids

the water molecules form temporary hydrogen bonds with the polar amino acids to help move them along

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6
Q

What can happen as a chain of water molecules moves through an aquaporin?

A

Proton hopping

A free H+ at the bottom of the chain can bind to an H2O to form H3O+

An H+ from H3O+ will leave that H3O+ and bind with a different H2O further along the chain to form another H3O+

The proton will continue to hop through the H2Os in a transmembrane protein until it reaches the other side of the membrane

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7
Q

Why is proton hopping an issue?

A

It disrupts the chemical gradient

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8
Q

How is proton hopping prevented?

A

Two key polar residues hydrogen bond with a water molecule at the centre of the water chain, preventing it from being able to bind with the H+ and make H3O+

this stops the forward movement of the H+ proton and only H2O molecules will move to the other side of the membrane

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9
Q

What is an ion?

A

A charged molecule

aka an electrolyte

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10
Q

What two gradients does the movement of ions depend on?

A

the chemical gradient (concentration)

the electrical gradient (charge)

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11
Q

How do we refer to the differences in ion concentrations?

A

as an electrochemical gradient

it includes both chemical/concentration and electrical gradients

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12
Q

Describe membrane potential

A

a difference in charge created by the maintenance of electrical gradients across a membrane

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13
Q

How can the difference in charge needed for membrane potential arise?

A

from both passive and active movement of ions

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14
Q

What is a major contributor to the difference in charge that creates membrane potential?

A

the sodium-potassium pump that constantly moves 3 Na+ out of the cell for every 2 K+ into the cell

creating a net negative charge across the membrane (more positive outside than inside)

AND the facilitated diffusion of K+

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15
Q

What is the net charge across the membrane? why?

A

negative!!

because the Na+/K+ pump moves 3 Na+ out for every 2 K+ it moves in –> more positive outside the cell than inside

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16
Q

Describe the resting membrane potential?

A

When there is no net flux of ions

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17
Q

What is the resting membrane potential? Though how can it vary?

A

Usually around -70 mV

But can vary between -20 mV and -120 mV depending on cell type and organism

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18
Q

What is the driving force for ion movement?

A

electrochemical gradient

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19
Q

What conditions will allow ion movement inside the cell the best?

A

when the electrochemical gradient is aligned with a negative internal membrane potential

outside will be high concentration of +
inside will be low concentration of -
so the electrochemical gradient will pull the + from outside to the inside

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20
Q

What conditions will allow ion movement inside the cell the best?

A

when the electrochemical gradient is aligned with a negative internal membrane potential (positive outside, negative inside)

outside will be high concentration of +
inside will be low concentration of +
so the electrochemical gradient will pull the + from outside to the inside because of the - inside

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21
Q

T or F: the electrochemical gradient will not move ions into the cell without a membrane potential

A

FALSE

EG will still move ions without potential

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22
Q

How will the electrochemical gradient work if the membrane potential is positive inside?

A

if membrane is negative outside
positive inside

and there’s high concentration of + ions outside
low concentration of + ions inside

ions will move against their electrochemical gradient toward the + inside

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23
Q

T or F: transport proteins move solutes (such as ions) at a different rate than simple diffusion

A

true

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24
Q

Why is the speed of facilitated diffusion initially high and then plateaus at a maximum speed?

A

as the concentration of solute increases, facilitated diffusion will increase rapidly and plateau because the protein channels fill up/become saturated so adding more solute will not make a difference

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25
Q

T or F: as concentration increases, rate of simple diffusion will increase

A

true because it is only based on the concentration gradient

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26
Q

Describe depolarization

A

Positive membrane potential deviation from the resting membrane potential

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27
Q

Describe hyperpolarization

A

Negative membrane potential deviation from the resting membrane potential

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28
Q

Why do charged ions require facilitation by ion channels to cross the cell membrane?

A

because the core of the cell membrane is hydrophobic

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29
Q

Describe ion channels

A

transmembrane (integral) proteins that contain a polar aqueous pore

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30
Q

How do ions move through ion channels? Is this movement passive or active?

A

WITH their electrochemical gradient

PASSIVE

Rapidly

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31
Q

What do ions usually have to do in order to pass through the selectivity filter of the pore in the ion channel?

A

Dissociate from any water molecules

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32
Q

Describe a selectivity filter

A

a tight point in the pore of an ion channel that is VERY selective to which solutes can enter and how

it relates to the thickness or narrowness of channel

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33
Q

T or F: ions can move across membranes without facilitation

A

FALSE, they require facilitation because ions are charged solutes and the membrane has a hydrophobic core

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34
Q

How many ion types do selectivity filters of ion channels usually allow through?

A

one

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35
Q

What could happen if a single amino acid change occurred in the pore of an ion channel?

A

loss of ion selectivity

potentially cell death

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36
Q

What are the 2 types of ion channels?

A
  1. leak channels

2. gate channels

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37
Q

Describe leak channels

A

ion channels in which ions can move freely along their gradients at a specific rate

these are always open

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38
Q

Describe gate channels

A

ion channels that are closed to ion movement until a conformational charge opens the pore

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39
Q

What are the 4 types of gate channels?

A
  1. voltage gated
  2. pressure/mechanically gated
  3. ligand gated
  4. pH gated
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40
Q

What function do leak channels serve for the membrane?

A

Long with Na+/K+ pump, they help establish and maintain the resting membrane potential

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41
Q

How do leak channels help establish resting membrane potential?

A

as Na+/K+ pump actively moves 2 K+ into the cell and increases the K+ concentration inside

leak channel allows K+ to diffuse passively out of cell (from high to low K+)

each K+ that leaves, leaves an unbalanced - charge inside the cell = helps create the RMP

the negative RMP prevents further efflux of K+

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42
Q

How does creating a negative RMP prevent further efflux of K+ from a cell?

A

the influx of 2 K+ ions by the Na+/K+ pump establishes a high concentration of K+ inside the cell

the presence of leak channels for K+ will allow K+ to diffuse out because of the high concentration

but keeping the inside negative, as K+ ions diffuse out, will prevent too many K+ ions from leaving because attractive forces will keep the + ions inside the - environment

43
Q

When will the net efflux of K+ by leak channels stop? why?

A

when the membrane potential reaches -70 mV (RMP)

the electrical force that drives K+ back into the cell is balanced by the chemical force moving K+ out of the cell and the electrochemical gradient = 0

44
Q

Describe the basic structure of ion channels

A

a bundle of at least 4 transmembrane amphipathic alpha helices

each helix:

outer hydrophobic surface to be in the core of the membrane

inner hydrophilic surface to move charged solutes (ions)

45
Q

Give an example of a leak ion channel

A

Bacterial K+ channel

tetramer of 4 identical subunits

each subunit has 2 transmembrane helices

each has a short ‘pore helix’ in outer leaflet

central transmembrane helices are kinked to form a cone with narrow end facing inside

46
Q

What is the selectivity filter of an ion channel lined with?

A

carbonyl groups (C=O)

47
Q

How does the selectivity filter select for K+ but not Na+ even though they are very similar in size?

A

the filter strips away any water from the K+ and

the channel is just wide enough for K+ to be able to properly bind to the oxygen in the carbonyl group

Na+ would not be able to orientate itself in a way to bind properly with the O in the carbonyl

48
Q

Describe voltage gating ion channels

A

Ion channels that are gated/closed at the pore and will open or close based on the voltage

49
Q

What causes a voltage gated ion channel to open or close?

A

a change in the membrane potential

Deviation from the resting membrane potential

50
Q

What do multicellular organisms use voltage gated ion channels for?

A

To create nerve impulses

Regulate secretion

Regulate muscle contraction

Rapidly change cell volume

51
Q

How many different domains do voltage gated ion channels have?

A

at least 2

52
Q

Define domains

A

Regions of a tertiary protein that have distinct functions and usually are separated by a segment of unstructured protein

53
Q

Define subunit (just to remind yourself)

A

The polypeptides (other protein structures) that make up a quaternary protein

54
Q

What are the two domains in a voltage gated ion channel?

A

Pore domain

Voltage sensor domain

55
Q

Describe the pore domain of a voltage gated ion channel

A

Allows ions to move through in the direction of their electrochemical gradient

56
Q

Describe the voltage sensor domain of a voltage gated ion channel

A

The domain that reacts to the voltage differences in the membrane and changes conformation

57
Q

How many subunits do most voltage gated ion channels have?

A

4

Each with 6 transmembrane alpha helices

58
Q

Describe the structure of voltage gated ion channels

A

4 subunits

each subunit has 6 alpha helices

59
Q

What do helices S1-S4 of a voltage gated ion channel subunit do?

A

contribute to the voltage sensing domain

60
Q

What do helices S5-S6 of a voltage gated ion channel subunit do?

A

Contribute to the pore domain

61
Q

What do all the helices of the subunits of a voltage gated ion channel contribute to?

A

the selectivity filter

62
Q

What does each subunit of a voltage gated ion channel provide to the middle of the channel? What does this form?

A

Oxygen groups

forms a 3D ring

63
Q

Which helices in each subunit of a voltage gated ion channel line the pore? and what is their function?

A

Helices S6 line the pore

their conformation determines whether the channel is open or closed

gate is formed by the inside cytoplasmic ends of the helices

64
Q

Explain how the gate opens in voltage gate ion channels

A

S4 helix has positively charged side chains within the helix

membrane potential depolarizes (gets more +) on the inside

repulsion of positive charge

causes S4 helices to move outwards

indirectly causes movement in S6 helices that form the gate

65
Q

Explain how the gate closes in voltage gate ion channels

A

Hyperpolarization of the membrane potential (more - inside?) triggers

attraction of positive charge

causes S4 helix to move inwards

indirectly causes S6 helices to close gate

66
Q

What is the inactivation region? Where is it located?

A

One cytoplasmic domain in a voltage gated ion channel usually has this

globular piece of the protein automatically moves to block the pore after it has been open for a period fo time

67
Q

T or F: inactivation will occur even if the membrane is depolarized

A

True, it just depends on how much time the pore has been open

68
Q

What triggers the opening of a voltage gated ion channel?

A

depolarization

causes the membrane potential to become more positive and the positive charges repulse to push the S4 helices outwards, pulling the S6 gate helices with them

69
Q

What triggers the closing of a voltage gated ion channel?

A

Hyperpolarization

causes the membrane potential to become more negative and attracts positive charges, pulling the S4 helices inwards and pulling the S6 gate helices with them to close the gate

70
Q

What is a ligand?

A

A general term for a small molecule that binds to a protein

71
Q

What does ligand binding or dissociating cause?

A

conformational changes in proteins that can open or close a channel

72
Q

Describe ligand-gated ion channels

A

Ion channels open/close when ligands bind or dissociate causing the conformational changes of the transport proteins that open or close the channel

73
Q

What is an example of ligand bonding?

A

Acetylcholine-gated sodium channel

74
Q

Describe the acetylcholine-gated sodium channel

A

Location: plasma membrane of skeletal muscle cells and postsynaptic membranes of neurons

Binding of acetylcholine triggers the opening of the channel and allows sodium to flow into cell

75
Q

Describe the acetylcholine-gated sodium channel

A

has 5 subunits

2 Ach binding sites
resting conformation is closed

Gate is near middle of lipid bilayer - here hydrophobic leucine R groups project into pore to block the channel

76
Q

How is the acetylcholine-gated sodium channel gated?

A

Near the middle of the bilayer, hydrophobic leucine groups project into the pore to block the channel

77
Q

Describe the process of opening the acetylcholine-gated sodium channel

A

ACh binds to both of the two binding sites = conformation change

moves alpha helices with the leucines out of the way

78
Q

How come when the acetylcholine-gated sodium channel is open only positive ions can get through?

A

there are negatively charged side chains at either end of the pore

so negatively charged ions will not be able to enter due to repulsion

79
Q

How do we study ion channels?

A

By evaluating the movement of an ion (a current) through a single channel as it opens and closes

80
Q

Describe a technique for studying ion channels

A

Patch clamping

Micropipette-electrodes made of polished glass are placed on the outer cell surface and sealed to the membrane by suction and the membrane is pulled away to get only a patch

81
Q

What is the ideal result of patch clamping?

A

to get a small number of channels in the membrane patch isolated

82
Q

What is the benefit of patch clamping?

A

you can control what is in the solution in the micropipette (EC side of cell) and the surrounding solution (Cytoplasmic side of cell)

ex. you can add Ach or Na+ ligand to surrounding solution

83
Q

How does studying voltage gated channels differ from ligand gated channels?

A

Both use patch clamps

but for voltage, we can ‘clamp’ (maintain) the voltage across a membrane at a consistent voltage where the channel is closed

then the adjust voltage so channel opens and monitor current that way

84
Q

What does it mean if the graph from a voltage patch clamp shows current levels?

A

ions are moving across the isolated membrane patch

85
Q

Define transporters

A

integral membrane proteins that allow for the diffusion of larger, polar solutes (ex. amino acids/sugars)

86
Q

What kind of molecules can transporters move? Give examples

A

large, polar

ex. amino acids, sugars

87
Q

What are the main differences between transporters and ion channels?

A

Transporters:

  • move large, polar solutes
  • slower
  • quickly become saturated

Channels:

  • small molecules (water, ions)
  • faster
88
Q

Describe the basic mechanism of transporters

A

Ligand binds to protein transporter on side of membrane (very high affinity = very tight bond)

conformational change triggered in transporter protein

new conformation brings ligand to other side of membrane where binding affinity for ligand is low

ligand dissociates

89
Q

What causes the conformational change in transporter proteins required to move solutes?

A

ligand binding to the transporter protein on one side of the membrane

90
Q

Which direction can transporters move solutes?

A

always down the concentration gradient = passive

91
Q

What determines the direction of transport in transporter proteins?

A

the ligand concentration gradient

92
Q

Give an example of a transporter

A

the glucose transporter

93
Q

Describe the structure of the glucose transporter

A

One peptide chain with 12 transmembrane alpha helices

94
Q

Briefly describe how the glucose transporter works

A

glucose binds on one side –>

changes conformation of transporter protein –>

glucose is released on other side of membrane –>

glucose is phosphorylated and cannot leave cell

95
Q

What happens to glucose as soon as it enters the cytoplasm?

A

it is phosphorylated

96
Q

Why is glucose phosphorylated as soon as it enters the cytoplasm?

A

to keep glucose concentration in the cell low to maintain the facilitated diffusion of glucose into the cell

97
Q

Why can’t glucose that has entered the cell leave the cell through the glucose transporter?

A

because it has been phosphorylated and is no longer just glucose

98
Q

Why is the glucose transporter and the phosphorylation of glucose necessary?

A

the phosphorylation of glucose keeps the concentration of glucose in the cell low

which ensures the constant diffusion of glucose into the cell

Cells need a constant supply of glucose to function

99
Q

Define isoforms

A

structurally similar proteins with the same function that are produced by slightly different genes or different mRNA’s from the same gene

100
Q

How many isoforms does the glucose transporter have for facilitated diffusion? What are they?

A

5

GLUT1-GLUT5

101
Q

Why are there 5 isoforms of the glucose transporter?

A

They are all slightly different because they are found in different tissues of the body

they need to have different levels of activity and different mechanisms of activation depending on where they are in the body

102
Q

Give an example of a glucose transporter in the human body

A

when blood glucose levels are high, insulin is released by the pancreas into the blood

103
Q

Describe the mechanism of the blood-glucose transporter

A

high blood-glucose levels in body triggers release of insulin by pancreas

insulin binds to the insulin receptor on a cell’s membrane

GLUT4 transporters are embedded in the cytoplasmic vesicles of most cells waiting for the signal

when insulin binds to receptor, a signal cascade tells vesicles to move to surface and fuse with plasma membrane

GLUT4 transporters bind glucose and move it into cell to lower blood-glucose levels