Partridge L15-21 Flashcards

1
Q

What is the immune system?

A

Integrated system of cells and molecules that defends against disease. Reacts against infectious pathogens. Type of response is dependant on the pathogen.

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2
Q

What are the two types of immunity?

A

Innate and adaptive.

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3
Q

What is innate immunity?

A

The one you are born with. It is present in almost all organisms and has a broad specificity, not affected by prior contact and has a rapid response.

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4
Q

What is adaptive immunity?

A

The acquired one. It is highly specific, enhanced by prior contact and has a slower response. As adaptive requires previous contact, babies require the immunity from the mother either from milk or the placenta.

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5
Q

What does the innate immune system consist of?

A

Barrier. Leukocytes (Phagocytes, NK cells). Soluble proteins (Complement, Interferons). Local and system responses (Fever, inflammation).

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6
Q

How are barriers part of the innate immune system?

A

Keratinised skin is an effective barrier unless breached by wounds or cuts which are exploited by pathogens. Some pathogens explicitly infect the skin such as Papilloma.
Most infections are caused by infections of mucosal surfaces.

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7
Q

What are the mucosal surfaces that can be infected in the body?

A
  1. Gastro-Intestinal Tract (300m2). = Salmonella, Shigella, Listeria, E.coli, Campylobacter. Poliovirus, Rotavirus, Norovirus
  2. Respiratory Tract (100m2) = Strep pneumoniae, Haemophilus influenza, Neisseria meningitides, Mycobacterium tuberculosis, Adenoviridae, influenza virus, SARS-Cov-2
  3. Genito-urinary tract = small surface area, but close contact for transmission of pathogens. Urinary tract infections are caused by E.coli and others that enter the genito-urinary tract and travel to the kidneys. Sexually transmitted include Treponema pallidum, Neisseria gonorrhoeae, Chlamydia trachomatis, HIV, HSV.
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8
Q

How do leukocytes affect the innate immune system?

A

These are derived from pluripotent stem cells which give rise to two main lineages one for myeloid cells and one for lymphoid cells.
1. Phagocytes are particularly important in extracellular bacterial/fungal infections. Two main types: neutrophils, mononuclear phagocytes.
Neutrophils = Main phagocyte in blood. Short-lived, fast-moving. Specialised lysosomes release enzymes, H2O2 etc.
Mononuclear phagocytes = Long-lived (months). Help initiate adaptive responses. Brain - microglial cells. Lungs - alveolar macrophages. Liver - Kupfer cells. In the blood called monocytes in the tissues called macrophage.
2. NK cells are a type of lymphocyte. Distinct cytoplasmic granules. Kill infected host cells. Important in viral (e.g. Herpes) and certain intracellular bacterial (e.g. Listeria monocytogenes) and protozoal (e.g. Leishmania) infections. Help keep viral infections in check until adaptive immunity develops

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9
Q

What does soluble proteins consist of in the innate immune system?

A

Defensins = positively charged peptides made by neutrophils. Disrupt bacterial membranes causing lysis.
Interferons = important in viral infections
Complement = important in extracellular infections
INTERFERONS (IFNalpha and IFNbeta) induced by viral infection make several contributions to host defence.

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10
Q

What is complement?

A

20 serum proteins, normally inert but can be activated in response to pathogens by innate mechanisms or when antibody binds to antigen (classical pathway). C1, 4, 2, 3, 5, 6, 7, 8, 9 is the classical pathway. C3 is the most important part of the pathway. Many components have enzyme (protease) activity. Central event of complement activation is the cleavage of C3 protein to generate peptide fragments C3a + C3b by C3 convertase.

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11
Q

What are the three major biological activities of complement?

A
  1. Recruitment of inflammatory cells = C5a (C3a) chemo-attractants to induce inflammatory mediator release. S.aureus chemotaxis inhibitor protein (CHIPS) binds C5a receptor to combat complement action.
  2. Opsonisation = C3b increases binding and phagocytosis. Important in killing gram +ve bacteria. Some bacteria evade opsonisation by producing a thick capsule that envelopes C3b (S. pneumonia, N. meningitides).
  3. Cell lysis = Membrane attack complex (C5b – C9). C9 polymerises to form hollow cylinders creating pores in bacterial membranes. Important in defence against gram -ve bacteria (gram +ves are resistant to MAC killing)
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12
Q

How do local and systemic responses affect the innate immune system?

A

Inflammation: Vasoactive amines, complement. Includes dilation of blood vessels, increases capillary permeability and phagocytes to migrate into tissues. Causes heat, redness, swelling and pain.
Fever response: Cytokines, LPS. Induces synthesis of prostaglandin E2 acting on the hypothalamus.
Inflammation and the fever response are examples of integrated response to infection

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13
Q

How is pathogen recognition done by phagocytes?

A
  • Antibody bound to pathogen ( via Fc receptors)
  • Complement components bound to pathogen (via C3b receptors)
  • Innate mechanisms – Pattern recognition receptors (PRRs) recognise microbe associated molecular patterns (MAMPs).
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14
Q

What are pathogen recognition receptors?

A

Receptor binding may initiate phagocytosis, chemotaxis or signalling. Chemotactic receptors recognise chemo-attractants = C5a receptor binds C5a or f-met-leu-phe receptor recognises N formylated polypeptides (produced by bacteria). Toll like receptors or TLRs are sensors that signal the presence of microbes.
Toll like receptors are an ancient pathogen recognition system. There are 11 in humans, each recognising distinct MAMP. They can be cell surface receptors or endosomal. TLRs usually function as dimers. Signalling induces expression of inflammatory cytokines and interferons.

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15
Q

What are the mechanisms for phagocytosis?

A

Acidification, toxic nitrogen oxides, enzymes, competitors etc. These are short lived and contained in the phagosome.

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16
Q

How do neutrophils work?

A

They “throw” neutrophil extracellular traps (NETs) around bacteria. This occurs following NETosis. The net is a DNA (chromatin) impregnated with antimicrobial compounds.

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17
Q

How do NK cells work?

A

Natural Killer cells recognise “altered self.” Killing regulated by opposing activating or inhibitory receptors Inhibitory receptors recognise MHCI (“self”) proteins present on all nucleated cells Alterations in MHCI expression prevents inhibitory signalling.
Activated NK cells produce perforin, which inserts into the membrane of the target cell. Granule contents (“granzymes”) are released into the target cell. Target cells undergo apoptosis. A recently discovered granzyme can enter intracellular bacteria, killing them directly.

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18
Q

How do cytokines work?

A

These are the “hormones” of the immune system. They are a diverse group of small soluble proteins that bind to cytokine receptors on target cells, regulating their behaviour during immune responses. Regulate immune responses by changing cell behaviour or gene expression 5-20kD; >100 identified Most act locally, but can have systemic effects Can be produced by many cell types in response to immune activation Act on cells bearing specific cytokine receptors. Main groups of cytokines include:
- Interleukins (IL-1, IL-38?) – usually made by T cells
- Interferons (IFNs) viral infections e.g. IFNα, IFNβ; cell activation (IFN γ)
- Chemokines - cell movement or chemotaxis e.g. IL-8
- Tumour necrosis factors (TNFs) – pro-inflammatory, can kill some cells

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19
Q

What is humoral (adaptive) immunity?

A

B lymphocytes recognise antigen. Differentiates into plasma cells that secrete soluble antibody that labels antigen.

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20
Q

What is cell mediated (adaptive) immunity?

A

T lymphocytes recognise antigen. Differentiates into cytotoxic T cells that kill infected host cells or helper T cells that control immune response.

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21
Q

What is an antigen?

A

A molecule that induces production of antibodies. It is an ANTibody GENerating material. A single antibody molecule is specific in that it normally binds to only one antigen

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22
Q

Where do B and T cells acquire their specific antigen receptors?

A

In bone marrow and thymus respectively.

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23
Q

What is the structure of an antibody?

A

Light (L) chain = 25kD Heavy (H) chain = 50kD Immunoglobulin G = L2H2 = 150kD. Antigen recognition is at the top and the Fab part of the chain. Antigen elimination is at the bottom and the Fc part of the chain. Antibodies act as “adaptors.” Important in extracellular bacterial infections, but also activity against intracellular pathogens. Antibodies may be DIAGNOSTIC of infections.
Variable (V) regions bind to the antigen. These differ between antibodies with different specificities. Constant (C) regions are the same for antibodies of a given H chain class or L chain type. VARIABLE and CONSTANT regions are encoded by separate exons. Multiple V region exons in the genome can RECOMBINE during early B cell differentiation (SOMATIC RECOMBINATION).

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24
Q

What are the different immunoglobulin classes?

A
  • IgG = Main class in serum (blood) and tissues important in secondary responses
  • IgM = Important in primary responses
  • IgA = In serum and secretions protecting mucosal surfaces.
  • IgD = ?
  • IgE = Present at very low levels involved in allergy and protection against large parasites.
    There are also two light chain types: kappa (κ) and lambda (λ). These are not class restricted i.e. can have IgGκ or IgGλ antibodies.
25
Q

Where are each immunoglobulin classes distributed in the body?

A
  1. IgG – Present in blood (serum), extracellular fluid and can cross the placenta
  2. IgM – Usually restricted to blood
  3. IgA monomer – Blood and extracellular fluid
  4. IgA dimer – Mucosal secretions, tears, saliva and breast milk
  5. IgE – Mainly associated with mast cells beneath epithelial surfaces (respiratory tract, GI tract and skin).
26
Q

How can B cells switch from IgM to IgG, IgA or IgE?

A

After antigen stimulation. The same V region gene recombines with different C region genes. This allows the same antigen specificity to be linked to different Fc functions/locations.

27
Q

What are the effects of immunoglobulins on pathogens?

A
  • Block adherence (IgM, IgG, IgA)
  • Neutralise toxins (IgG, IgA)
  • Agglutination of bacteria, inhibits movement (IgM, dimeric IgA)
  • Block uptake of nutrients (IgG)
  • Complement mediated lysis (bacteria and enveloped viruses)
  • Enhancement of phagocytosis (opsonization)
  • Enhanced killing of infected cells by NK cells
28
Q

How can antibodies act as opsonins?

A

They bind to Fc receptors on phagocytes. This is primarily done by IgG and monomer IgA. Bacterial Fc receptors bind IgG.
Infected host cells may express foreign proteins on their cell surface (e.g. virus envelope proteins). Allows specific recognition by cells such as NK cells with appropriate Fc receptors.
Killing of infected host cells by this route is known as antibody dependent cell-mediated cytotoxicity (ADCC).

29
Q

What are thymus independent antigens?

A

Some microbial antigens can induce B cell responses in the absence of T cells ( TI antigens). B cell responses to most protein antigens require T cell help (thymus-dependent or TD antigens). Class switching and somatic hyper-mutation usually require T cell help.

30
Q

What are the two types of T lymphocytes?

A

T helper cells (CD4+ve) and T cytotoxic cells (CD8+ve).

31
Q

What is the role of T helper cells?

A

Help B cells make antibodies. Activate macrophage and natural killer cells. Help development of cytotoxic T cells.

32
Q

What is the role of T cytotoxic cells?

A

Recognise and kill infected host cells. Act like natural killer cells just with more specificity and so will only kill host cells that are infected and not normal ones.

33
Q

How were the proteins CD4 and CD8 found on T cells?

A

Through the use of monoclonal antibodies.

34
Q

What is the structure of a T cell receptor?

A

Very similar to the Fab arm of an antibody. V and C regions are encoded by separate exons. V domain recognises the antigen. Multiple V regions recombine during early T cell differentiation called somatic recombination. Only ever found in cell membrane of T cell.

35
Q

How do T cells recognise infected host cells?

A

T cell receptor recognises cell associated processed antigens. Major histocompatibility proteins (MHC) transport processed antigens - peptides to the surface of host cells.

36
Q

What are the two types of major histocompatibility proteins?

A

MHCI and MHCII

37
Q

What is MHCI?

A

MHCI is expressed by all nucleated cells and display endogenous antigen to CD8 +ve (cytotoxic) T cells. Endogenous is a protein that has been synthesised by an antigen presenting cells in the cytoplasm.

38
Q

What is MHCII?

A

MHCII is expressed by macrophage, dendritic cells and B cells and display exogenous antigen to CD4 +ve (helper) T cells. Exogenous is a protein that has been taken up from the environment by the antigen presenting cell.

39
Q

How does CD8 interact with MHCI?

A

Cytotoxic T cell receptor recognises peptide bound to MHCI. Virus infected cell -> viral proteins, some are broken down in cytosol (proteasomes) -> peptides transported to ER, bind MHCI -> cell surface. Activated cytotoxic T cells kill the infected cell by inducing apoptosis.

40
Q

How does CD4 interact with MHCII?

A

Helper T cell receptor recognises peptide bound to MHCII. Macrophage / dendritic cell / B cell internalises and breaks down foreign material -> peptide bind to MHCII in endosomes -> cell surface. Activated T helper cells help B cells make antibody, produce cytokines that activate/regulate other leukocytes.

41
Q

What is the role of T helper cells (TH0)?

A

Develop into different subsets that differ in the cytokines they produce. Induced by different types of pathogen and orchestrate different immune functions, to generate pathogen appropriate responses.

42
Q

What are the five subsets of T helper cells?

A

TH1 CD4. TH2 CD4. TH17 CD4. TFH CD4. Treg CD4.

43
Q

What is the role of TH1 CD4 cells?

A

Produce interferon-y (important in activating cells), IL-2 (develops cytotoxic cells) and TNF (activates cells). These activate macrophages and cause inflammation, induce B cells to make IgG (opsonising) antibodies and induce production of cytotoxic (CD8 +ve) T cells. This affects extracellular bacteria, microbes that persist in macrophage vesicles (e.g. mycobacteria, Leishmania donovani), viruses.

44
Q

What are TH2 CD4 cells?

A

Not as numerous as TH1 cells with a ratio of 60:40. Produce IL-4, IL-5 and IL-13. Activate mast cells, eosinophils. Induce B cells to make IgE. Affects helminths and allergens.

45
Q

What is the role of TH17 CD4 cells?

A

Produce IL-17 and IL-22. Activates epithelial cells e.g. to make antimicrobial peptides in epithelial cells, recruits neutrophils. Pro-inflammatory, especially at mucosal surfaces. Affects extracellular bacteria (e.g. Klebsiella pneumonia), fungi (e.g. Candida albicans).

46
Q

What is the role of TFH CD4 cells?

A

Produce IL-21. Induce B cell differentiation, class switching and affinity maturation (somatic hyper-mutation). Affects most microbes. Found close to B cells in lymph nodes.

47
Q

What is the role of Treg CD4 cells?

A

Produce IL-10 and TGF-beta (Transforming growth factor). Heterogenous group that suppress inflammation by acting on other T cell subsets, B cells etc. Down-regulates immune responses once infection dealt with. Affects self and microbiome-derived antigens.

48
Q

What is the function of CD8+ve cytotoxic cells?

A

Once activated, cytotoxic T cells bind specifically to infected target cells, create perforin and induce the target cell to undergo apoptosis by perforating the cell membrane secreting granzymes into the affected cell.
Granzymes (proteases) from cytotoxic T cell enter target cell via perforin channel causing a caspade cascade. Extremely efficient as a single cytotoxic T cells can kill 100s of infected targets and extremely specific. During apoptosis the cell contents are not released and the cell body can be cleaned up by a cell such as a macrophage.

49
Q

What are the goals of vaccination?

A

Generation of long lasting, protective immunity. Aims to eradicate disease and reduce incidence/transmission of disease.

50
Q

What were the factors that led to the elimination of small pox?

A

Disease limited to human. No long term carrier state. Few unrecognised clinical cases. One or few serotypes. Stable, cheap and effective vaccine available. Eradication programme is cost effective.

51
Q

What is herd immunity?

A

Where the majority of the population is vaccinated so the disease can’t spread.

52
Q

What are the three types of vaccine?

A

Attenuated pathogen - Virulence reduced so causes mild infection. More effective as it mimics an infection more closely. Killed pathogen - Unable to replicate. Subunit pathogen - Molecular component(s) of pathogen.

53
Q

What are attenuated live vaccines?

A

Generally more effecting - “real” infection at appropriate body site, inducing immune response. Methods of attenuation:
- serial passage through cell culture in vitro (viruses)
- serial passage in vitro (bacteria)
- adaptation to low temps
- genetic manipulation

54
Q

What are killed vaccines?

A

Inactivated so unable to replicate. Safer but some side effects possible.

55
Q

What are sub-unit vaccines?

A

“Safer”, fewer side-effects, but require adjuvants, multiple injections, immunity may be shorter-lived. Toxoid – chemically inactivated toxin e.g. diphtheria, tetanus. This was one of the first vaccines introduced. Subcellular fractions – e.g. polysaccharide capsules of pneumococci. Conjugate vaccines – polysaccharide linked to carrier protein (stimulates B and T cell immunity) e.g. N. meningitides C vaccine. Recombinant protein e.g. Hepatitis B antigen (expressed in yeast), Novavax (modified SARS-CoV-2 spike protein, expressed in baculovirus).

56
Q

What are recombinant vector vaccines?

A

Genetically engineered and use vector (virus) to express pathogen antigen in host cells.

57
Q

What are DNA/RNA vaccines?

A

Use DNA or RNA to transiently express pathogens antigen in host cells. mRNA is most commonly used. DNA can be injected into muscles whereas RNA has to be injected using a nanoparticle.

58
Q

What barriers are there for vaccines?

A
  • Complex life cycle of the pathogen
  • T cell immunity needed
  • High mutation rates
  • Many types of pathogen
  • Expensive
  • Lack of appropriate medical infrastructure
  • Patient compliance
  • Personal / religious objections
  • “Fake news”