oral_biology_theme_4-7_20150331151415 Flashcards
List some Gram positive species of bacteria found in the mouth
Streptococcus (S. oralis - up to 50% oral flora, anaerobes in abscesses)Staphylococcus (S. epidermidis)Actinomyces (A. naeslundii - dental plaque)Lactobacillus (L. Acidophilus - increase in carious lesions)Eubacterium (E. brachy - periodontal pockets)
What is Alpha haemolysis?
Green ring around bacteria produces hydrogen peroxide = oxidises haemoglobin to methaemoglobin
What is Beta haemolysis?
Lysis of red blood cells (clear ring around bacteria)
What is Gamma haemolysis?
No Haemolysis
Which oral bacteria are associated with Infective endocarditis?
Streptococcus OralisStreptococcus GordoniiStreptococcus SangiusStreptococcus Mitis
Which oral bacteria are associated with preterm low birthweight?
Fusobacterium nucleatum
Which has Lipopolysaccharide… Gram positive or gram negative bacteria?
Gram negative bacteria
List some gram negative species of bacteria found in the mouth
Neisseria (N. Subflava - early tooth coloniser)Veillonella (V. parvula - tongue and dental plaque)Haemophilus (H. Aphrophilus - saliva, mucosal surfaces & dental plaque)Eikenella (E. Corrodens - increase in gingivitis)Capnocytophaga (C. Gingivalis - in periodontal pockets)Aggregatubacter (A. Actinomycetemcomitans - localized aggressive periodontitis)Porphyromonas (P. gingivalis - periodonto pathogen, lots in sub gingival plaque)Prevotella (P. intermedia - high numbers in sub gingival plaque)Fusobacterium (F. Nucleatum - high numbers in sub gingival plaque)Spirochetes (Treponema denticola - periodontopathogen, high nubers in sub gingiva plaque = difficult to culture)
What is a biofilm?
A microbial community forming at a phase boundary (generally a liquid to solid interface)
Give some examples of where biofilms are found?
Catheters, Implants & dental plaque
What are the constituents of a biofilm? (7)
BacteriaFungiAlgaeProtozoa BacteriophagesEnvironmental DebrisHost components
Explain how biofilms accumulate (3)
- Molecular fouling = conditioning film2. Microfoulding = initial colonisation by bacteria followed by micro algae and fungi3. macrofouling = colonisation by complex molecules (macro algae & invertebrates) = DAMAGE TO UNDERLYING SURFACE
Is biofilm formation across a whole surface uniform or not?
No!
What is sessile growth?
Where cells are attached to a surface or a preformed biofilm
What is planktonic growth?
Where the bacteria grow in liquid suspension
Which changes occur in gene expression of bacteria between the planktonic and sessile phase (5)?
- Morphology- Motility (flagellum)- Growth rate (metabolic -> slows down/stops in biofilm)- Signalling (influences each others growth - still competes)- Antibiotic and disinfectant tolerance (slower metabolism)
Fermenter systems: what is a chemostat?
planktonic growth - can have surface suspended within (form biofilm on) or you can have a chemostat to a chemostat with surface
Fermenter systems: what is a constant depth film fermenter (CDFF)?
contains a biofilm disc and scraper -> can compare biofilms on different materials or can be removed at different times (Separate recesses)
Problems caused by biofilms (5):
- Equipment damage- Product contamination- Energy losses- Medical infections (catheter, contact lenses etc.)- not easy to treat or remove = COST
Explain the 3 methods of antimicrobial resistance within a biofilm:
- Transport limitations (neutralised by surface layer)2. Physiological limitations (slow growing state = less susceptible to antimicrobial challenges)3. Spread of resistance phenotype (up regulation. spreading through a variety of mechanisms)
What enzymes can resistant bacteria secrete to produce a bubble of protection around themselves?
Beta lactamases
List the advantages of microbial culture (2):
- can determine antibiotic resistance- Identify virulence factors
List the disadvantages of microbial culture (3):
- Slow- Identification is often difficult- Only 50% of the oral flora can be cultured
What are the advantages of the checkerboard (2)?
- Can complete a very large amount of analyses at the same time (40 probes & 40 plaque samples)- Quantitative
What are the disadvantages of the checkerboard (4)?
- Requires careful calibration- Lab based (difficult to adapt for clinical use)- Takes several days to complete- Need cultural organisms to make probes
What are the 10 suspected periodontal pathogens?
Aggregatibacter actinomycetemcomitansPorphyromonas gingivalisPrevotella intermediaTannerella forsythiaEikenella corrodensFusobacterium nucleatumParvimonas micraTreponema denticolaCampylobacter rectusStreptococcus intermedius
Why is the 16s rRNA DNA conserved and does not change between generations?
It is essential for life, any mutations would stop it working and the cell would die = would not pass on altered genome
What are the conserved regions of 16s rRNA used for (2)?
- sequence alignment- Universal primers fo PCR and sequencing
What are the variable regions of 16s rRNA used for (2)?
-phylogenetic analysis - detecting individua bacteria (species or strains specific PCR)
Which method does microarray use?
Ink spray method (spray specific probe onto specific region of chip)
Which two bacteria increase with orthodontic brackets?
T. denticolaS. gordonii
Why does plaque have different compositions in different areas?
Different environmental conditions (varying saliva flow, abrasive forces etc.)
What is a climax community?
A steady state appropriate for local environmental conditions (predominantly gram negative anaerobic rods)
How does dental plaque form? (4)
- Conditioning film (host glycoproteins)2. Linking film (streptococci -> link to other bacteria which can then bind to plaque)3. Coaggregation and conditioning film (actinomyces) = secondary colonisation4. Accumulation and shedding = dynamic and parts removed with saliva
What is the overall charge of enamel?
Negative (binds to positively charged molecules)
List the different types of bacterial adhesin: (5)
LectinsFimbriaePiliOther cell wall proteinsAnchorless adhesins (leave bacterial cell surface - binds to pellicle then rebinds bacteria)
What is atomic force microscopy and how does it work?
Records the force required to break the bonds of bacteria/protein to the probeElevate on end of the probe (measure angle of elevation and hence force with laser)3 points of attachment or bacteria to probe = repeated forces needed to break it off
Do different fimbrae exist?
Yes, different protein arrangements - bind different glycoproteins
Proline rich proteins:
Major component of the pellicle (readily adsorbs onto hydroxyapatite surfaces -> negatively charged region -> binds calcium)Lots of genetic variants (some glycosylated)Selectively mediate bacterial adhesionDegraded by proteasesTandem repeat of proline -> number of repeats determines which bacteria it preferentially binds (e.g. cariogenic streptococci or health associated bacteria)
Which protein is expressed on the surface of S. gordonii?
Amylase binding protein
What do secondary colonisers bind to?
Often to the primary colonisers
What are 3 types of interactions in plaque?
- cell-substratum adhesion2. Homotypic cell- cell adhesion (to same species)3. Heterotyic cell-cell adhesion (to different species) = complex
What is coaggregation?
Occurs in suspension -> most bacteria coaggregate with at least one partner type
What is coadhesion?
Occurs with pre-attached cell (to pellicle)
What are bacteriocins? Give two examples:
peptide antibioticse.g. Actinobaccilin & Mutacins
What is EPS?
Extracellularpolymeric substance
What % of total plaque volume does EPS make up?
35
What is the role of EPS (4)?
- Facilitates diffusion in and out of plaque- Structural integrity (consolidates attachment of cells)- Communication- Localises acid fermentation products)
What are the components of EPS (3)?
Proteins (oral fluids & microbes)Polysaccharides: Glucans (from diet = Linear/branched)Fructans (from diet = Linear)eDNA
How is colonisation resistance achieved?
- adherence to receptors/ligands for adhesion- compete for essential nutrients and co-factors- create microenvironment (e.g. acidic or no O2) = discourages growth of exogenous species- produce inhibitory substances (e.g. bacteriocins)
What is an essential nutrient?
Required in a specific channel form and cannot be synthesised in the body (must come from the diet)
Give some examples of an essential nutrient (5):
Amino acids (proteins) - adults have 9 essential, children have 12Fats (Mono & poly-unsaturated fats)Macrominerals -> support biochemical processesMicrominerals -> enzyme co-factors (need <100mg/day)Vitamins (enzyme co-facor precursors, hormone precursors, antioxidants)
What is a non essential nutrient?
Can be replaced by other nutrients or synthesised by other non-essential nutrients within the body
Give some examples of a non essential nutrient (3):
All carbohydratesMost fatsMost amino acids
What causes enamel hypoplasia?
Calcium deficiencyVitamin A & D deficiency (regulate calcium homeostasis)
What causes enamel fluoridosis?
Excess fluoride
At what age is an individual most susceptible to enamel fluoridosis?
6 Months to 4 years
In which 3 ways can form affect risk of caries?
- Retention in oral cavity = increased risk- Mastication -> stimulates saliva (decreased risk)- Combined with constituents of HPA -> counteracts the demineralisation by acid
What is acidogenic potential?
the ability of a carbohydrate to be broken down into acid
What is cariogenic potential?
the ability of a carbohydrate to be broken down by BACTERIA (fermentation) into acid
What are intrinsic sugars?
located naturally within the cellular structure of a product (e.g. whole fruit and veg) -> these are good for you!
What are extrinsic sugars?
added by the manufacturer, cook or consumer (e.g. fruit juices, honey & syrups) -> potentially harmful - should not exceed 10% of daily energy intake
How cariogenic is lactose?
It is the least cariogenic disaccharide (bacteria struggles to convert it into acid)
What is Casein?
A component of milk that helps with re-mineralisation (along side calcium & phosphate)
Name a caries inhibitor:How does it work?
Apigenin =a naturally occurring flavonoidInhibits S. mutans glucosyltransferases = less S. mutans biofilm formation (necessary for progression of dental caries)
What is Apigenin found in?
ParsleyOnionsApplesBasilCelery rootTeaPeasArtichokeFeverfewOrange juiceGrapefruit juiceAlfalfa
What is erosion?
The irreversible loss of dental hard tissue by acids in a process that does not involve bacteria
What are the features of erosion?
Smooth & shiny surfaceCupping and grooving on occlusal surfaces
Why is Citric acid worse at erosion than any other acid?
When the acid dissociates it produces a proton and a citrate anionCitrate anion = Calcium chelator = remineralisation no possible because insufficient calcium in saliva
What does vitamin C usually do?
A co-factor in collagen synthesis
What are the features (2) of an individual with vitamin C deficiency?
Weakened tissues (soft, swollen and bleeding gums & weakened periodontal ligament)Capillary fragility (bruising)
What are the features of Vitamin B deficiencies?
Angular chelitis (deep cracks at corned of mouth & shallow ulcers) = B2, 3 & 12Glossitis (inflamed, painful tongue) = B2, 3, 6 & 12
Which health problem is associated with an excess in Sugars?
Oral fungal disease
Which health problem is associated with an excess in Vitamin A?
Lung cancer (smokers)
Which health problem is associated with an excess in Zinc?
Reduced immune function
Which health problem is associated with an excess in Manganese?
Muscle/nerve disorders (elderly)
Which minerals compete for absorption?
Calcium competes with Iron (too much calcium in diet = iron deficiency)Iron competes with zinc
What are the potential effects of alcohol on oral cancer?
- acts as a solvent for other carcinogens- metabolised => Acetaldehyde = DNA damage (inhibits DNA synthesis and repair)- Abuse is associated with a poor diet
Which foods are associated with oral cancer?
- Areca nut (chewed in betel quid leaves)- Raw/uncooked foods contaminated with microbial metabolites (e.g. Peanuts can be contaminated with Aspergillus favus = Aflatoxin B1 = cancer risk)
Anticancer agent:
- Non-starchy fruits and vegetables (e.g. citrus, raw fruits & carotenoids = Beta carotene & lycopene) High intake decreases risk by 40-80%
What is the critical pH? What happens below this pH?
pH 5.5.Disrupts equilibrium between demineralisation & remineralisation (more demineralisation occurs)
What is dental caries?
An infection of bacterial origin that causes demineralisation of the hard tissues and destruction of the organic matter of the tooth
What is plaque?
A complex bacterial community embedded within EPS
What is plaque fluid?
The aqueous component of EPS
How is plaque fluid different to saliva?
It contains Potassium and Ammonium (product of metabolism from microbe within the plaque)Rich in Calcium & phosphate (close proximity to tooth surface)
What does the Stephan curve show?
It detects the carcinogenicity of a product
How is the Stephan curve constructed in vitro?
- Operator takes 6-7 plaque samples from different sites2. Plaque is homogenised with distilled water3. pH is measured using a micro pH electrode4. This is repeated 5-6 times over a time period
What are the pros of the in vitro method?
- Cheap- Requires little specialised equipment
What are the cons of the in vitro method?
- Requires great skill to obtain reproducible results (collect same amount of plaque each time)- Volunteer must allow for sufficient plaque to accumulate
How is the Stephan curve constructed in vivo?
- Construct a special bridge incorporating a pH electrode2. Place bridge in volunteers mouth3. Allow plaque to accumulate over the surface of the electrode and monitor the pH
What are the pros of the in vivo method?
- Produces large amounts of real time data- Monitering possible over long time periods- Plaque is not disturbed so can be tested against multiple challenges
What are the cons of the in vivo method?
- Equipment is expensive- Sample size is small (due to cost)- Volunteers must have dentition allowing for the placement of a bridge
At which pH does plaque buffer?
pH 4.0
Which (4) factors determine the lowest pH the plaque reaches?
- Microbial composition (aciduric or acidogenic)- Plaque density (saliva accessibility & diffusion rate)- Location (e.g. molar fissures sheltered from natural salivary flow & difficult to fully remove plaque from deepest regions of fissures )- Nature of the fermentable carbohydrate (complex sugars must initially be broken down by salivary amylase before it can be fermented by bacteria = slower metabolism and less acid produced)
What are the 5 methods of caries prevention?
- Dietary control (e.g. sugar substances -> xylitol = taken up by S. mutans but cannot be metabolised & sorbitol)2. Stimulation of salivary flow3. Reduce plaque build up4. Inhibit demineralisation5. Fluoride
Which group of bacteria is predominant in health?
Gram +ve Facultativee.g. S. sanguis, S. gordonii, Actinomyces spp, Haemophilus Neisseria
Which group of bacteria is predominant in caries (excess sugars in diet)?
Gram +veFacultativee.g. S. mutans, S sobrinus, Actinomyces spp, Lactobacillus spp, S. wiggsiae, Bifidobacteria
Which group of bacteria is predominant in periodontal disease (lack of oral hygiene & immune dysfunction)?
Gram -veAnaerobic rodse.g. Porphomonas gingivalis, tannerella forsynthia, treponema denticola, aggregatibacter actinomycetemcomitans
Is caries genetic or microbiological (transmissible)?
Bit of bothMainly infectious (hamster experiment)
Which microbiota is found in primary enamel caries?
S. mutans & S. sabrinus
Which microbiota is found in secondary enamel caries?
Actinomyces spp. & lactobacillus spp.
Which microbiota is found in primary root caries?
Actinomyces spp. ( in older people with receding gums)
Which microbiota is found in secondary root caries?
Lactobacillus spp, S. mutans & S. sabrinus
Which microbiota are associated with early childhood caries?
S. mutansScardovia wiggsiae
How does S. mutans contribute to carcinogenicity?
Sugar transport systems:Efficient even at low pH!1. Sugar ABC transport systems (uses ATP to transport maltose into cell -> glycolysis = energy)2. Phosphoeonolpyruvate phosphotransferase systems (sugar phosphorylated from 2B protein -> enters glycolytic pathway to phosphopyruvate = pyruvate)
What is aciduricity?
Tolerance to acid (cells are able to survive, metabolise & grow even at low pH -> outcompete other bacteria at low pH)
Which enzyme synthesises Glucans?
Glucosyltransferases
Are water soluble Glucans linear or branched?
Linear
Where are water soluble Glucans produced?
Both inside & outside cells
What are water soluble Glucans used for?
Short term energy store
Are water insoluble Glucans linear or branched?
Branched
Where are water insoluble Glucans produced?
Outside the cell only
What are water insoluble Glucans used for?
Long term energy store
What are the other two functions of water insoluble Glucans in the oral cavity?
- Sticky & hard -> acts as cement- Promotes accumulation of plaque
What is a Glucan?
Chains of glucose residues
What us a Fructan?
Chains of fructose residues
Which enzyme synthesises Fructans?
Fructosyltransferases
Are Fructans linear or branched?
Often linear
What are Fructans used for?
Rapid energy store (fructose metabolism is even faster than glucose -> 1 step less in glycolysis)
Give an example of a Glucan binding protein:Which bacteria express them?
LectinsS. mutans & other streptococci
What is the role of Glucan binding proteins?
Cementing agents
What is attrition?
loss of tooth substance due to tooth-to-tooth contact (Bruxism)Does not involve -> incisal edge, occlusal surfaces & bacteria
What is abrasion?
loss of tooth substance due to friction of foreign body independent of occlusion(E.g tooth brushing and pipe smokers)
What is erosion?
loss of tooth substance due to chemical processes (does not involve bacteria)Can be dietary, occupational (lead acid battery atmospheric pollution) & regurgitation of the stomach contents (bulimia)
In which two ways are caries classified?
- site (e.g. pit/fissure, smooth surface/interproximal & root)- rate of progression (e.g. rampant - rapid, affects many teeth and often on normally resistant surfaces; chronic - slowly, defence reaction in pulpodentinal complex, most common in adults & arrested caries - become static)
What are the different zones in early enamel caries (4)?
- Translucent zone2. Dark zone3. Body of lesion4. Surface zone
What are the different zones in caries of dentine (5)?
- Sclerosis2. Demineralisation3. Bacterial invasion4. Destruction5. Reactionary dentine
What are the two types of abnormal calcification that can occur in the teeth?
- Pulp stones (denticles : True = tubular structure, False = calcified but no tubular structure & Fixed/Free)- Dystrophic
In which 3 ways is pulpits managed?
- Pulp capping- Pulp extirpation & endnotes treatment- Tooth extraction
What is 1ppm equal to?
1 mg/L