Old Exams Flashcards
Please choose the true statement:
a. Sickle cell anemia is a recessive autosomal mutation that results in forming fibers of myoglobin that deform the red blood cell
b. In aqueous solution, most proteins are surrounded by a hydration layer of water molecules that hydrogen bond with hydrophilic amino acids on the protein surface
c. Adult hemoglobin becomes the predominant hemoglobin in the body just prior to birth
d. Fetal hemoglobin has a higher affinity for 2,3 bisphosphoglycerate (2,3BPG) than does adult
b. In aqueous solution, most proteins are surrounded by a hydration layer of water molecules that hydrogen bond with hydrophilic amino acids on the protein surface
You are studying a protein that has an aspartate residue in the active site. Which of the following would be least likely to disrupt function of this protein?
a. Replacing this amino acid with glycine
b. Replacing this amino acid with glutamate
c. Replacing this amino acid with serine
d. Replacing this amino acid with proline
b. Replacing this amino acid with gluatmate
Please choose the false statement
a. Denaturants disrupt protein structure and cause a loss of normal function
b. Chaperone numbers increase during heat stress and are known as heat shock proteins
c. Change in pH can result in denaturing conditions and loss of enzyme function
d. Beta-mercaptoethanol works by ionizing amino acid side chains
d. Beta-mercaptoethanol works by ionizing amino acid side chains
What is the pH of solution of acetic acid, when [acetate] = 1 mM, [acetic acid] = 10 µM; the pKa = 5.6
a. 2.6
b. 4.6
c. 6.4
d. 7.6
e. None of the above
d. 7.6
Please select the true statement:
a. Ionic bonds are non-directional
b. The fatty acid tails of membrane lipids primarily associate through hydrogen bonding
c. In solving for the energy present in an ionic bond, positive values of E are attractive, whereas negative values for E are repulsive
d. Both a and c are true
a. Ionic bonds are non-directional
Which buffer is optimal for an enzymatic reaction if the enzyme optimal pH = 3.8
a. Acid A, with the following pKas: pKa1 = 2.2, pKa2 = 4.8, pKa3 = 3.8
b. Acid C with the following pKas: pKa1 = 6.1, pka2 = 7.8
c. Acid B with the following pKas: pKa1 = 4.1, pKa2 = 9.8
d. Acid D with the following pKas: pKa1 = 2.0, pKa2 = 5.0, pKa3 = 8.1
c. Acid B with the following pKas: pKa1 = 4.1, pKa2 = 9.8
Please select the true statement:
a. RNA is translated by RNA polymerase, which uses RNA as the template
b. DNA is used as a template during the translation of proteins
c. The polymerization of nucleic acids is driven forward by mass action through the loss of PPi
d. Replication uses deoxyribonucleotides only during the synthetic process
e. All the above are true
c. The polymerization of nucleic acids is driven forward by mass action through the loss of PPi
Which of the following is false?
a. Carbon dioxide produced in metabolically active cells is a substrate for carbonic anhydrase
b. The heme ring is an asymmetrical prosthetic group, as the portion that is buried in the global chain and the portion that contacts the aqueous solution are not the same
c. Carbonic anhydrase catalyzes the irreversible production of carbonic acid from CO2 and H2O
d. Hemoglobin in the tense state has a lower affinity for oxygen than hemoglobin in the relaxed state
c. Carbonic anhydrase catalyzes the irreversible production of carbonic acid from CO2 and H2O
What is the pH of a liter of 0.1 M NaOH?
a. 13
b. 12
c. Approximately 7
d. 2
e. 1
a. 13
Please select the true statement:
a. Fetal hemoglobin is a tetramer of two alpha-globing chains and two beta-globing chains
b. The secondary structure of myoglobin is primarily beta sheet loops and coils
c. Human myoglobin and the human hemoglobin are paralogs
d. Myoglobin functions as a tetramer and shows allosteric binding kinetics
c. Human myoglobin and the human hemoglobin are paralogs
Please choose the true statement:
a. At a pH greater than the pKa of an acid, the acid is present at higher concentration than its conjugate base
b. Buffers are weak acids that buffer most effectively at the pKa of the acid, but generally have buffering capacity within 1 pH unit above and 1 pH unit below the acid’s pKa
c. The bicarbonate buffer system is the primary cellular buffering system
d. Although they have ionizable groups, free amino acids cannot function as buffers
b. Buffers are weak acids that buffer most effectively at the pKa of the acid, but generally have buffering capacity within 1 pH unit above and 1 pH unit below the acid’s pKa
The normal 3-D structure of a single protein chain is called its tertiary structure.
a. True
b. False
a. True
Which of the following is true:
a. In peptide synthesis, the peptide bond forms between the alpha amino group of the amino acid already in the chain, and the alpha carboxy group of the incoming amino acid being added
b. In peptide synthesis, the peptide bond forms between the alpha-carboxy group of the amino acid already in the chain, and the alpha-amino group of the incoming amino acid being being added
c. In peptide synthesis, the peptide bond forms between the alpha-carbon of the amino acid already in the chain, and the alpha-amino group of the incoming amino acid being added
d. In peptide synthesis, the peptide bond forms between the alpha-amino group of the amino acid already in the chain, and the alpha-carbon of the incoming amino acid being added
b. In peptide synthesis, the peptide bond forms between the alpha-carboxy group of the amino acid already in the chain, and the alpha-amino group of the incoming amino acid being being added
In the lipid bilayer, lipids are held together by covalent bonds to form the lipid membrane.
a. True
b. Flase
b. False
Please select the true statement:
a. The proximal histidine of hemoglobin acts to limit access to the central iron ion, and prevent superoxide release
b. When oxygen leaves hemoglobin oxygen-binding site as superoxide, the resultant oxidation state of that iron in the heme molecule is 3+
c. The primary function of myoglobin is to carry oxygen in the blood
d. The iron in methemoglobin is at the 2+ oxidation state
b. When oxygen leaves hemoglobin oxygen-binding site as superoxide, the resultant oxidation state of that iron in the heme molecule is 3+
In aqueous solution, polar amin acids are most commonly on the outside of a protein, while non-polar amino acids are generally buried inside the proton, away from the aqueous solution.
a. True
b. False
a. True
Please select the false answer:
a. The four elements at the highest mole percent in humans are H, C, N, O
b. Chiral amino acids that comprise proteins are in the D-configuration with respect to the chirality of the alpha-carbon substituents
c. A covalent bond between two carbon atoms has a higher bond energy than the van der Waals interactions between two carbon atoms
d. Hydrogen bonds are linear interactions
b. Chiral amino acids that comprise proteins are in the D-configuration with respect to the chirality of the alpha-carbon substituents
Please select the true statement:
a. Prolines tend to kink the peptide backbone, and are commonly found in the middle of an alpha helix
b. Free aniline has a positive charge of zero in aqueous solution at physiologic pH
c. Glycine is one of the most commonly substituted amino acids in proteins because it is so small
d. Disulfide bonds form between two cysteine residues under reducing conditions
b. Free aniline has a positive charge of zero in aqueous solution at physiologic pH
Select the false statement:
a. Alpha helices are held in position by hydrogen bonds parallel to the axis of the helix
b. Hydrogen bonds that stabilize alpha helices form between main chain atoms 3-4 amino acids apart
c. Peptide bonds show partial double bond characteristics
d. Beta-strands are held together in a beta-sheet by hydrogen bonds that form between R groups
e. Amino acid R’ groups project outward from the alpha helices
d. Beta-strands are held together in a beta-sheet by hydrogen bonds that form between R groups
Alpha helices are helical structures that are hallow at the center of the helix
a. True
b. Flase
b. Flase
The amino acid sequence of a yeast protein is 80% identical to its human homolog, but the DNA sequences of the gene that encode these two proteins are only 65% identical. How can this be?
a. Changes in amino acid sequence are tolerated more easily than changes in DNA sequence
b. Changes in amino acid sequence rarely result in loss of function, while changes in DNA coding sequence generally does result in a change in the function of the coded protein
c. Mutations leading to differences in DNA sequence might not lead to differences in amino acid sequences because the genetic code is degenerate
d. RNA is often mutated, while DNA is more stable and this accounts for the difference
e. All the above are true
f. Only a, c, and d are true
c. Mutations leading to differences in DNA sequence might not lead to differences in amino acid sequences because the genetic code is degenerate
The approximate energy (E) of an electrostatic interaction formed between two ions, both with a charge of -1, which are 1.0 Angstroms apart in a solution with a dielectric constant of 2 will have a positive value.
a. True
b. False
a. True
Which amino acids have side chains that can form an ionic bond (salt bridge) with one another at physiologic pH?
a. Ala and Arg
b. Asp and Arg
c. Lys and Arg
d. Cys and Asp
e. Aso and Leu
b. Asp and Arg
Of the 20 amino acids found in proteins, those classified as acidic have a full formal negative charge at physiologic pH.
a. True
b. False
a. True
Please choose the true statement:
a. Catabolic pathways are divergent, oxidizing and release energy
b. Lysine is a zwitterion at physiologic pH
c. Alanine has a positive charge at pH 12
d. The side chains of Cys and Met can make disulfide bonds with one another
a. Catabolic pathways are divergent, oxidizing and release energy
The nitrogenous bases in DNA are cytosine, guanine, adenine, and uracil.
a. True
b. False
b. False
Oxygen has a lower affinity for hemoglobin, and tends to be released, under which of the following conditions:
a. High pH and High CO2
b. Low pH and Low CO2
c. High pH and Low CO2
d. Low pH and High CO2
d. Low pH and High CO2
Please choose the true statement:
a. One codon can correspond to more than one amino acid
b. All amino acids are encoded by two or more codons
c. Each of the 64 codons encodes an amino acid
d. Only c and d are true
e. None of the above statements are true
e. None of the above statements are true
Please choose the true statement:
a. The covalent bonds that link nucleotides together in DNA or RNA are phosphoanhydride bonds
b. 6 M urea is a denaturant used to to disrupt covalent peptide bonds in proteins
c. The 4 classes of macromolecules are carbohydrates, proteins, lipids, and nucleotides
d. Amyloid fibers are readily accessible to cellular protease digestion, as their structure is abnormal
c. The 4 classes of macromolecules are carbohydrates, proteins, lipids, and nucleotides
Please select the false statement:
a. Alpha helices in most proteins are right-handed
b. The total entropy of a system must increase for a reaction to be favorable
c. A beta-turn is a secondary structural element representing a sharp turn that changes the direction of a peptide strand
d. Motifs are super-secondary structures formed by secondary structural elements that are positioned in a specific order, one right after another, to form a distinctly typical pattern that is the hallmark of that motif
b. The total entropy of a system must increase for a reaction to be favorable
Please select the false statement:
a. Glycogen is a storage form of glucose polymer that is found in animal tissues
b. Hydrogen bonding is greater in glycogen and starch than it is in cellulose and chitin
c. The bonds linking sugars together to form carbohydrate polymers are called glycosdisic bonds
d. Cellulose and starch are both glucose polymers
e. Glycogen is more highly branched than starch
b. Hydrogen bonding is greater in glycogen and starch than it is in cellulose and chitin
Please select the true statement:
a. Interactions between amino acid side chains determine whether any two given amino acid residues will form a peptide bond
b. Valine and methionine are hydrophobic, branched chain amino acids
c. Tryptophan, tyrosin and phenylalanine are aromatic amino acids
d. There are no true answers here.
c. Tryptophan, tyrosin and phenylalanine are aromatic amino acids
Glycine, alanine, and leucine are hydrophobic amino acid.
a. True
b. False
b. False
Please choose the trues statement:
a. Cysteine is a conservative substitution for methionine
b. Tryptophan is a conservative substitution for alanine
c. Leucine is a conservative substitution for valine
d. All of the above are true
e. Only a and c are true
c. Leucine is a conservative substitution for valine
Transcription factors in archaea are more similar to transcription factors in humans than to transcription factors in E. coli
a. True
b. False
a. True
What is the ΔG when ΔS = 100 J/molK, ΔH = 10 kJ/mol, and T = 298 K?
a. 7.02 kJ/mol
b. -7.02 kJ/mol
c. 12.98 kJ/mol
d. -12.98 kJ/mol
e. 19.8 kJ/mol
f. -19.8 kJ/mol
g. 39.8 kJ/mol
h. -39.8 kJ/mol
f. -19.8 kJ/mol
Please select the true statement:
a. Our bodies represent closed systems
b. The energy described by: Esystem + Esurroundings is always a number greater than zero
c. The pI of a protein is the pH at which each amino acid in the protein has no charge
d. Some proteins need the assistance of chaperones to fold correctly
e. Only c and d are true
d. Some proteins need the assistance of chaperones to fold correctly
The second law of thermodynamics says that: the entropy of the system never decreases.
a. True
b. False
b. False
Please select the true statement regarding heme synthesis:
a. The first reaction of heme synthesis is a condensation reaction between the TCA cycle intermediate succinyl CoA and the amino acid glycine.
b. The first reaction in heme synthesis forms delta-aminolevulinate.
c. Propionate side chains are hydrophobic and help to anchor the heme ring into the hydrophobic pocket of the globin peptide chain.
d. All the above are true
e. Only a and b are true.
e. Only a and b are true.
For a reaction in the presence of a competitive inhibitor, Vmax > Vmaxapp.
a. True
b. False
b. False
Forming lactic acid from pyruvate is an oxidation reaction, with NAD+ as the electron acceptor, and lactate plus NADH and H+ as the products.
a. True
b. False
b. False
Two identical reactions one of which has an enzyme added, are allowed to reach equilibrium. Will there be a significant difference in these two reactions?
a. The ratio of products to reactants will be more in the non-catalyzed reaction.
b. The ratio of products to reactants will be less in the non-catalyzed reaction.
c. The ratio of products to reactants will be the same in the both reactions
c. The ratio of products to reactants will be the same in the both reactions
When glucose levels are low, the activity of the glycolytic pathway is increased.
a. True
b. False
b. False
Please select the true statement:
a. Pyruvate carboxylase is a cytoplasmic enzyme.
b. Pyruvate carboxylase requires coenzyme A to activate pyruvate.
c. Pyruvate carboxylase requires a biotin cofactor to transfer electrons to pyruvate to form lactate.
d. None of these statements is true.
d. None of these statements is true.
How many molecules of delta-aminolevulinate does it take to form a heme ring?
a. 2
b. 4
c. 8
d. 16
c. 8
Glucagon response in the liver results in which of the following?
a. Inhibition of gluconeogenesis
b. Inhibition of phosphofructokinase 2 (PFK2)
c. Activation of hexokinase. (HK)
d. Activation of phosphofructokinase 1. (PFK1)
b. Inhibition of phosphofructokinase 2 (PFK2)
Which of the metabolites below has a lower phosphoryl transfer potential than ATP?
a. Creatine phosphate
b. 1,3-bisphosphoglycerate (1,3-BPG)
c. Glycerol 3-phosphate
d. Phosphoenolpyruvate. (PEP)
c. Glycerol 3-phosphate