October test Flashcards

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1
Q

what is a zoonatic disease?

A

a disease that originated in a non-human organism and

“splitover” into humans

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2
Q

How do Viruses replicate?

A
  1. Virions enter the host cell
  2. Reverse Transcriptase will make RNA into DNA
  3. Integrase splices viral DNA into host DNA
  4. Transcription/Translation
  5. New virions bud or burst out
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3
Q

Are viruses considered as a living organism?

A

Viruses are not really considered to be living organism because
1. They cannon reproduce on their own - they need a host cell
2. They have no energy metabolism
3. No response to stimuli
Only when they enter a host are they considered to be alive.

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4
Q

What are the three orgins of viruses?

A

Virus First: viruses evolved from complex proteins and nucleic acids before cells did. So viruses contributed to the rise of cellular life.

Reduction hypothesis: viruses were once smaller cells that acted as parasites and larger cells

Escape: viruses evolved from bits of DNA or RNA that escape from genes or larger organisms.

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5
Q

Why is it difficult to treat viruses?

A

It is hard to treat viruses without hurting the host cell.

Viruses has a rapid rate of mutation (due to reverse transcriptase) so random resistance mutations can occur. Then that resistance baryon will continue to reproduce and increase in frequency. Therefore decreasing the drug effectiveness.

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6
Q

Why are drug cocktails so helpful?

A

If the virus has the random mutation, using two drugs against it will work better than using just the one

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7
Q

What is reverse transcriptase?

A

an enzyme found in viruses that is error prone (which is why viruses are prone to mutations).

It mistakes AZT for the Thymidine base pair which is how it killed the virus. The AZT lacks the hydroxyl group in thymidine , therefore nothing else can join it, ending the reverse transcription.

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8
Q

Why is reverse transcriptase prone to so many mutations?

A

Because it does not have any proof reading capabilities. therefore its unable to go back and fix any mistakes it has made.

this is why many viruses have yearly vaccines. Because the influenza strain changed over time.

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9
Q

What is the theory of natural selection?

A

Heritable variations passed on selectively leading to a change in genotype of a population.
* A change in your genome that makes you more adaptive to you environment that is passed down to offspring.

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10
Q

what is the theory of evolution?

A

decent with modification from a common ancestor.
- A change in allele frequency from one generation to another.
- leads to speciation as the genes of each generation will be classified as their own species.
- Variational not Transformational
- often gradual
Proof: homologous structures - similarity suggests a common ancestor.

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11
Q

what is the difference between variational and tranformational?

A

Transformational - an organism can transform itself and propagate those traits onto future generations

variational - random mutations that occur in a population that increases an organisms fitness (ability to reach a reproductive age and reproduce) over generations.
*random occurrences that are beneficial to that species in its environment.

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12
Q

Which of the following best describes evolution by natural selection?

A

A. Environmental change causes some individuals to experience mutations. Mutation’s that improve survival or reproduction in the new environment will spread through the population.
B. Mutations are always occurring, regardless of environmental conditions. If a mutation improves survival or reproduction, it will spread through the population.
C. Mutations are alway arising, regardless of the environment conditions. If a mutation is not currently helpful, but is likely to be helpful in the future, it will increase in frequency.
D. Changes in the environment causes individuals to change their phenotype. This change is passed on to the next generation in the form of mutations to their genotype.

Answer: B

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13
Q

What is falsifiability?

A
  • An idea that can never be proven but can but can falsify to support the idea
  • what makes the idea scientific is if it can be proven wrong.
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14
Q

When is an idea normally NOT falsifiable?

A

They are not specific
They are opinions/ subjective
They cannot be measured

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15
Q

Which of the following is not falsifiable?

A

A. Pacific salmon cannot reproduce more than once in their lifetime.
B. Passenger pigeons never really went extinct: they have just become so rare that they are difficult to find.

Answer: A

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16
Q

what is the value of “n”

A

One set of an organisms nuclear chromosomes. It also represents the ploidy number. For example, in humans, one set of chromosomes is 23 of them. However humans are diploid, meaning we have two sets of chromosomes. Therefore we have 2n.

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17
Q

What is the value of “C”

A

The amount of DNA in one set of chromosomes. It should be the same number as the ploidy, and it will double in DNA synthesis as DNA is being replicated. Once the cells have split, it will return to normal. For example in the human cell there is 2C and 4C during division.

NOTE - C is never less then n and is usually a multiple pf n

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18
Q

What is prokaryote cell division

A

Simple and divide through binary fission

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19
Q

What is Eukaryote cell division

A

G1 - where the cell grows and prepares itself to divide. (2n&2C)
S Phase (synthesis) - where the DNA is doubled and replicated. DNA is only replicated here!! (2n & 4C until mitosis is complete)
G2 - The cell checks over everything and makes sure its ready for division before M-phase (mitosis)
Mitosis - Where the cell undergoes the process of splitting into two daughter cells

Note: through g1,S and g2 the proteins and molecules are continuously being synthesized in preparation for division and other normal cell functions.

Cells that never divide remain in the g2 stage. Whereas cells that divide rapidly may never enter the g2 stage.

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20
Q

What occurs at the G1 -S Checkpoint?

A

is the cell in the correct condition to replicate DNA? Is there cell damage? is it receiving signals to replicate?if they fail this checkpoint they will initiate cell arrest or enter g0

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21
Q

What occurs at the G2 Checkpoint?

A

Is the cell in the right condition to divide? Has DNA full been replicated in the S phase? is any DNA damaged? If at any of the checkpoints there is damage to the cell, it will try and fix itself. However if deemed irreversible, the cell will apoptose

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22
Q

What occurs at the Metaphase Checkpoint

A

Are the chromosomes ready to separate? Are they ligned up properly? Are they correctly attached to the mitotic spindle? If at any of the checkpoints there is damage to the cell, it will try and fix itself. However if deemed irreversible, the cell will apoptose

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23
Q

What are the stages of Mitosis

A

Prophase - chromosomes condense and become visible under a microscope. nuclear envelope begins to dissovle and the spindles begin to form.
Prometaphase - nuclear membrane completely dissolves, spindle fibers attach to now visible chromosomes
Metaphase - all chromosomes align along the metaphase plate (aka spindle mid-point)
Anaphase - the cohesion that holds together sister chromatids in the middle of the cell is cleaved and drawn to opposite poles of the cell. Each chromatid is now considered a chromosome (4n&4C)
Telophase & Cytokinesis - chromosomes begin to unfold and a nuclear envelope begins to form while the cell begins to divide into two due to cytokinesis.

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24
Q

Definition of Mitosis

A

The replication of genetic material. How organelles are replicated and split

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25
Q

which parts of the cell are independent and undergo binary fission rather then mitosis?

A

Mitochondria and Chloroplasts.

26
Q

What is a karyotype

A

a collection of an organism’s condensed chromosomes . To make a karyotype, a cell is frozen in metaphase. Therfore is shows 2n&4C

27
Q

When does DNA replication occur?

A

S-Phase

28
Q

DNA has a polarity at

A

5’ and 3’

29
Q

True or false:

The DNA double strand is antiparallel?

A

True

30
Q

What shape are prokaryote chromosomes? What shape or eukaryote chromosomes?

A

Prokaryotes - circular

eukaryotes - linear

31
Q

Which of the following breaks the covalent bonds of the sugar phosphate backbone?

A

A. Topoisomerase
B. DNA Polymerase I
C. Helicase
D. A&B

Answer: D
DNA Poly. 1 and Toiposomerase break the bonds of the sugar backbone. whereas helicase breaks the amino acid bonds.

32
Q

What is the problem found at the bottom right corner of the replication fork?

A

The blue primer cannot be refillied because there is no 3’ OH for polymerase to extend from. therefore chromosomes will get shorter and shorter with replication and genes will shorten as well.

33
Q

What is the solution to the replication fork problem?

A

Telomeres. They are repetitive sequences at the end of our chromosomes (TTTAGGG) that protect our genes from being shortened because they are shortened instead.

34
Q

What is telomerase and how does it work?

A

The enzyme that restores the shortened telomeres with an RNA template (that is created itself). It doesn’t prevent shortening it just restores what was lost. It also extends the DNA template for polymerase. After, primase can add the RNA primer that DNA polymerase will extened and ligase will then seal it to the backbone (the nyx).
Telomeres can run out which is the reason for the Hayflick limit which is the number of times a cell can divide before division stops. when it is reached cells undergo senescence aka irreversible cell cycle arrest.

35
Q

What is the Hayflick Limit?

A

The number of times a cell can divide before division stops. when it is reached cells undergo senescence aka irreversible cell cycle arrest.

36
Q

what is senescence?

A

irreversable cell cycle arrest (cell dies)

37
Q

which cells to not have telomerase?

A

Stem cells, cancer cells, and germline cells

38
Q

why might we have so much ‘junk’ in our DNA?

A

maybe increase variation which can then lead to evolution.

39
Q

what are the two types of DNA Damage?

A

Endogenous - inside of the cell

Exogenous - outside of the cell

40
Q

how do we fix DNA Damage?

A

DNA Poly III rarely make mistakes, but when they do they can fix it using their own proof reading mechanism. Through is 3’ -> 5’ exonuclease activity DNA Poly III can remove the mismatch base and insert the correct one.

41
Q

what happens when DNA proof reading fails?

A

Excision repair.

  1. the repair enzymes come in and detect the distortion
  2. endonuclease activity cut out the backbone
  3. DNA Poly fills in the gap
  4. Ligase seals to nick
42
Q

What happens if both Proofreading and Excision repair fail?

A

A mutation occurs once the DNA is replicated and increases variation.

43
Q

what are thymine dimers?

A

a type of DNA damage that occurs when adjacent thymines are exposed to uv light. These are problematic because DNA polymerase cannot synthesize past them. To fix them we need to use excision repair because we dont have photolyase.

44
Q

What is non-homologous end join ing?

A

It repairs double stranded breaks by joining blunt ends without using a template. This is a sloppy process and can results in mutations because you can lose nucleotides.

45
Q

what are the 3 mechanisms to ensure the inheritance of sameness?

A

Semi conservative replication
complementary base pairing
Proofreading.

if we dont have these, we can have so much variation and your kids will not look like you

46
Q

what order shows enzymes working in the correct order?

A

telomerase>Primase>DNA Polymerase III>Ligase

47
Q

Polymers grow by extending the 3’OH on a previously

paired base. Which of the following enzymes adds a DNA base to the 3’OH of a previously paired RNA base?

A
  1. Primase
  2. telomerase
  3. DNA Polymerase I
  4. DNA Polymerase III

Answer: 4

Primase- adds RNA to the already existing DNA strand
Telomerase - adds DNA bases that are complementary to RNA but they add to the strand opposite to the RNA and add bases to the 3’OH of DNA
DNA Poly I - removes the RNA Primer and adds DNA to the 3’ OH of DNA

48
Q

What is the difference between a Mutation and DNA Damage?

A

A mutation is a change in the double stranded DNA sequence (variation reveres to mutation not damage)
DNA Damage is any change made to DNA that is not double stranded.

Note: a mutation can occur after a round of replication of a damaged DNA

49
Q

what are the three mechanisms of variation?

A

Substitution, InDel and inversions

50
Q

What is a SNP?

A

Single Nucleotide Polymorphism “in pairs”

  • most common type of genetic variation
  • we can determine a lot about a person via SNPs
51
Q

What is Insertion Slippage?

A

Insertion slippage is due to backwards slippage in the synthesis (new ) strand. (IBS)

52
Q

What is deletion slippage?

A

Deletion slippage is due to forward slippage in the template strand. (DFT)

53
Q

When is slippage more common?

A

In the regions of DNA that are highly repetative.

54
Q

True or False:

Tautomeric shifts are spontaneous (happen at random)

A

True

55
Q

True or False:

Tautomeric Shifts are mismatches

A

False. It is not recognized as a mismatch by the cell, it represents a change in preferential base pairing.

56
Q

which bases are typically found in keto form?

A

Thymine and guanine

57
Q

What does thymine base pair with when in Keto? what does it base pair with in enol?

A
keto = adenine (amino)
enol= guanine (keto)
58
Q

which base pairs are in amino form?

A

adenine and cytosine

59
Q

what does cytosine base pair with when in amino? what does it base pair with in imino?

A
amino= guanine (keto)
imino = adenine (amino)
60
Q

what is a base analog?

A

anything that looks similar to a base and can be mistakenly taken by the enzyme instead of the actual base.

61
Q

what are transposable elements

A

they are often reffered to as jumping genes
they are biological mutagens
consist of a region that can code for an enzyme that allows it to cut/copy itslef and paste it somewhere else in your genome.
It is a reason why are genes are so large and so full of junk. bc they are just copying and pasting themselves in our genome