Nucleotides- week 1 Flashcards

1
Q

what’s the difference between a nucleotide and nucleoside

A

nucleotide has a phosphate group where as a nucleoside doesnt

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2
Q

Identify bonds within ATP that release energy upon hydrolysis, indicating which produce a greater amount of energy.

A

-hydrolysis of the each Anhydride residue yields about 30kJ/mol
-hydrolysis of each Ester linkage yields about 14kJ/mol
-hydrolysis of ATP releases about 470kj/mol of useful energy

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3
Q

Explain why ATP has a higher energy as ATP than the value of hydrolysing its chemical bonds

A

The high energy of ATP comes from the two high-energy phosphate bonds.

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4
Q

explain how Co-enzyme-A can be used as a co-factor for both transport and synthesis of fatty acids.

A

-Coenzyme A carries fatty acids through the oxidation process in the mitochondria and transfers acetyl groups during the elongation process of fatty acid synthesis in the cytosol.

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5
Q

Draw links between the processes of β-oxidation of fatty acids and oxidation of pyruvate to Acetyl Co-A.

A

Co-A is also used for esterification of fatty acids- they can be bound to Carnitine for transport, if bound they are destined for β-oxidation to make Acetyl- CoA which;
-increases production when glycolysis rates increase
-produced by oxidation of Fatty Acids

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6
Q

what are Co-enzymes- give examples

A

they are organic – carbon-based – CARRIER molecules, like:
* Electron Carriers (i.e NADH, it carries the electron/H+ for a enzyme) ● Acyl Carriers (like Co-enzyme A carries acyl groups instead)

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7
Q

what are co-factors- give a example

A

PARTICIPATE in enzymatic reactions like:
DNA Polymerase (DNA replications) uses Mg2+ to stabilise the negatively charged DNA molecule, its more involved with the in the catalysis

*DNA is very -vely charged due to all the phosphate groups around it

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8
Q

What do co-factors & co-enzymes do?

A

Molecules that help or facilitate certain enzymatic reactions;

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9
Q

What are our source of co-factors/co-enzymes and give examples of each

A

most co-enzymes and co-factors are vitamins and minerals that only come from your diet, as your body can make them from scratch.
-when talking about Vitamins we are talking about ORGANIC co-factors & co-enzymes
(examples of them are: vitamin B3(niacin)- is a precursor for NAD & Vitamin B5-is a precursor for CoA)
-Minerals are INORGANIC co-factors in our bodies (e.g. Mg2+ which DNA polymerase will use) not all minerals act as only cofactors- e.g. Ca2+ which is also used for teeth and bones

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10
Q

what are the non-genetic functions of nucleotide molecules (5 points)

A
  • Energy currency
  • Facilitators of enzymatic reactions (e.g. as co-factors)
  • Chemical links to external stimuli (signals)
  • Metabolic intermediates
  • Transmission of genetic information
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11
Q

Identify actions and structures involved in cellular signalling

A

Autocrine- a single cell releases a molecule which then gets attached to a different part of the same cell to elicit the response from itself (i.e hormones
Paracrine- essentially the same thing but the signalling is occurring between 2 different cells instead of the same cell
Endocrine- basically paracrine but it enters the circulatory system to get to another cell

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12
Q

what is the difference between endocrine and paracrine cell signalling

A

its the implication of the secondary system in the signalling molecule- endocrine molecules enter the circulatory system whereas paracrine doesn’t as the signalling happens locally

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13
Q

what are the classic nucleotide signalling molecules

A

cAMP/Cyclic AMP(adenine monophosphate) & cGMP/Cyclic GMP(Guanine monophosphate)- the nitrogenous bases are very important

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14
Q

Explain how nucleotide molecules can act as signalling factors through acting as a co-stimulatory molecule or through the transfer of a “useable” group.

A

-they act as intercellular signal transductions- so transferring into cells the effects of hormones(e.g glucagon & adrenaline)
-also act as regulators of ion channels (can be used to initiate vasodilation-where the cell needs more oxygen/ more energy or can initiate apoptosis-cell death)

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15
Q

Identify role of nucleotide molecules as intermediary metabolites and give an example of this

A

nucleotides can act as reservoirs/ sort of bins to take up waste material or can act of intermediates linking various molecules together
example- purine metabolism

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16
Q

Describe briefly role of nucleotides in nucleic acids DNA/RNA.

A

only source of genetic information
DNA and RNA are made up of monomers known as nucleotides. The nucleotides combine with each other to form a nucleic acid, DNA or RNA. Each nucleotide is made up of three components: a nitrogenous base, a pentose (five-carbon) sugar, and a phosphate group

17
Q

what are the similarities between DNA & RNA

A

-both nucleotides are bonded with phosphodiester bonds
-both have a lack of nucleotides at the 5’ and 3’: have a negatively charged phosphate group at the 5’ and a hydroxyl group at 3’

18
Q

what way are DNA & RNA molecules expressed directionally

A

from 5’ to 3’

19
Q

what are the 2 different bonds in a ATP molecule and explain where its located within that ATP molecule

A
  • Anhydride -formed between the 3 phosphate groups
  • Ester bond- formed between the ribose sugar and the 1st phosphate group