Neurodegenerative Disease Flashcards

1
Q

Hallmarks of Ageing

A
  • genomic instability
  • telomere attrition
  • epigenetic alteration
  • loss of proteostasis
  • mitochondrial dsyfunction
  • stem cell exhaustion
  • cellular senescence
  • increase in disorder
  • electrical parameters decline in the nervous system
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2
Q

Healthy Ageing vs Dementia

A
  • in healthy ageing there is little or no neuronal loss but synaptic function changes
  • dementia is pathological ageing and neurological death
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3
Q

Dementia

A
  • progressive loss of cognitive and intellectual functions without impairment of consciousness
  • caused by structural brain disease
  • AD is a type of dementia
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4
Q

Alzheimers

A
  • occurs with age
  • leads to neuron death and failure of all brain systems
  • degeneration of fundamental circuits
  • myelin attacking, synapses dissolving, loss of brain volume
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5
Q

AD Discovery

A
  • Alois Alzheimer
  • sectioned a patients brain with symptoms of AD and stained with dyes
  • found plaques and tangles in the brain
  • ‘strange disease of the cerebral cortex’
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6
Q

Disease Pathology

A
  1. neuronal loss
  2. synaptic damage
  3. amyloid plaques: precipitate of fat/cholesterol/amyloid
  4. neurofibrillary tangles: helix of protein
    - not known which is first or how they’re related
    - can occur together or singly in types of dementia
    - Increased AB production facilitates neurofibrillary tangle formation
    o Tangles more present in mice with mutant APP
    - Removing tau gene from mice alleviates symptoms of APP overexpression
    o Some symptoms caused by AB may be mediated by dysregulation of tau
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7
Q

Amyloid Plaques

A
  • extracellular
  • formed of B-amyloid peptide and APOE
  • overproduction of B amyloid is involved in mutation
  • start in hippocampus
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8
Q

Neurofibrillary Tangles

A
  • intracellular (inside cells)
  • paired helical filaments
  • major component is the protein tau (hyperphosphorylated)
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9
Q

Familial AD mutations

A
  • cause early onset AD with autosomal-dominant mutation
  • 3 genes: APP, PS1, PS2 (amyloid precursor protein and presenilin protein)
  • also APOE4 allele: strongeset genetic risk factor for late onset AD
  • TREM2 allele is also a risk factor
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10
Q

Presenilin

A
  • proteases processing B-amyloid protein

- control rate of production of amyloid

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11
Q

Formation of AB Peptide

A
  1. B secretase cleaves APP
  2. y secretase (PS) cleaves APP
  3. assembly of AB into fibrils
  4. a secretease can also cleave
    - cleavage in the membrane is a biochemical challenge
    - proteases provide special environment to get water into the membrane via a passage and cleave the peptide bond
    - lateral movement of the substrate in between the TM domains 6/7 and cleavage
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12
Q

Amyloid Precursor Protein

A
  • no known function
  • no effect in knockout mice
  • overproduction = disease
  • found on the surface of all neurons cell body
  • cleavage releases fragments and one fragment is amyloid B peptide
  • AB is soluble but close to the crystal state so easily forms assemblies (seed) that can build into a plaque
  • happens constantly but older people have more
  • reach a clinical threshold of plaques that is toxic to system (toxicity not understood)
  • overproduction of deposited proteins leads to disease
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13
Q

Amyloid B

A
  • cleavage by B secretase generates N terminus and intramembranous cleavage by y secretase gives C terminus
  • a secretase cleavage precludes AB formation
  • AB is usually soluble and cleared from the brain constantly
  • duplication of the APP gene and missense mutations in the APP gene cause inherited AD
  • failure of clearance can also cause disease
    eg. missense mutation speeding up AP production
  • not clear why AB is toxic to neurons/their function (some have AB without disease)
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14
Q

What is amyloid?

A
  • amyloid state: elongated fibers with spines consisting of many stranded B sheets
  • amyloid fibers are unbranched usually extracellular and found in vivo
  • insoluble: 2 antiparallel B sheets with cross B fiber diffraction pattern
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15
Q

Tau

A
  • microtubule associated protein (MAP)
  • no confirmed function
  • expressed in all neurons
  • IDP with alternative splicing at N terminal exons and microtubule repeat domains
  • domains bind different molecules suggesting a central role in signaling pathways and cytoskeletal organisation
  • hyperphosphorylation of tay leads to microtubule destruction
  • abundant neurofibrillary tangles and neurophil threads comprised of pathological tau
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16
Q

Tau Effects

A
  • in a disease neuron there is a loss of Tau binding with microtubule dissociation
  • tau is sequestered in tangles
  • neuronal transport loss
  • new biochemical profile
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17
Q

Tau Mutations

A
  • there is a sequence of amino acids in the tau gene which when mutated slightly increase the possibility of phos.
  • overproduction of hyperphos. tau triggers pathology
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18
Q

Tau Structures

A
  • paired helical filament of tau protein
  • filaments make up protein inclusions
  • ind. tau proteins form C shapes stacking together to form filaments with antiparallel B sheets
  • twisting filaments of stacked hyperphos. Tau layers
  • core has C structures with antiparallel sheets surrounded by fuzzy coats : core is pathological
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19
Q

GWAS for AD

A
  • most cases of AD have no familial mutation

- GWAS showed APOE gene variations (cholesterol binding protein) was a risk factor

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20
Q

APOE

A
  • 4 versions of the APOE allele
  • unknown function
  • blood soluble
  • somehow gets into the brain and forms deposits around plaques
  • specific aa polymorphisms
  • if you are homozygotic for 4 version increases risk
    eg. only 20% of 4/4 carriers are unaffected at 75
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21
Q

APOE Pathology

A
  • cholesterol core surrounded by APOE protein of different varieties
  • AB is somehow associated with APOE: seeds plaques
  • not known why APOE is disease associated
  • monomers of AB form oligomers and nucleate insoluble seeds
  • fibrils and APOE form amyloid plaques
22
Q

TREM2

A
  • mutation increased risk of dementia
  • associated in plaques with APOE
  • loss of TREM2 function increases amyloid seeding but reduces plaque associated APOE
23
Q

Microglia

A
  • macrophage immune cell
  • resident macrophages in the brain provide defense
  • help with synaptic pruning, neuronal plasticity, phagocytosis, programmed cell death
  • can be pathologically over-activated and cause neuro-inflammation
  • causes excessive synaptic pruning/inflammation

o TREM2: subjects with one copy of a specific variant have higher AD risk
o TREM2 is expressed in immune cells like brain microglia that clear damaged cells (stimulate phagocytosis and suppress inflammation)
o CD33 is a antigen inhibiting microglia uptake of AB and CD33 mutant mice have reduced plaque levels

24
Q

TREM2 and microglia

A
  • TREM2 is a regulator of microglia functions upon AD associated neuroinflammation
  • TREM2 is on the surface of microglia
  • microglia have a receptor for amyloid/cholesterol to surround plaques
  • TREM2 binds cholesterol/AB is a sensor for microglia to detect amyloid plaques
  • TREM2 overexpression causes dense core plaque and knockout causes filamentous plaque
25
Q

AD Hypothesis

A
  • unknown trigger causes inflammatory shell ausing microglia to overact/digest neurons axons
  • triggers increased Tau phos./APP production (these are the agents of pathology)
  • aberrant processing of APP forms plaques
26
Q

Other Factors

A
  • age, genetics
  • vasculature
  • innate immunity
  • microbiome
  • more
27
Q

Sleep and Wake Cycles

A
  • AB increases in wake and decreases in sleep
  • cerebrospinal fluid analyzed for AB
  • soluble AB 1-42 builds up during day (maybe seeding more amyloid plaques) and sleep removes it
  • more hyperphos. Tau fragments after sleep restriction
  • sleep drives metabolite clearance from the brain
28
Q

Sleep Experiments

A
  • blood capillary has extracellular space between glia feet and capillary surface
  • space increases during sleep as glial cells (astrocytes) contract
  • waste fluid flows down outside of vessels with flow increasing during NREM sleep
29
Q

Therapies

A
  • no effective current treatments
  • acetylcholinesterase inhibitors and NMDA receptor antagonists increase cognitive performance transiently
  • AD develops 10-20 years prior to recognizable clinical signs so by the time it is recognized there are substantial symptoms
  • eventually clinical threshold is reached
30
Q

Aducanumab

A
  • monoclonal antibodies binding to amyloid fragments and clearing the brain
  • controversial and not recommended for approval due to side effects
  • clinical trials showed danger to patients
  • ideally want a biomarker screen for Tau/AB to take treatment for delaying onset
  • want early intervention treatment
31
Q

Development of AD Agents

A
  • secretase inhibitors: inhibit AB production
  • amyloid lowering antibodies: reduce amyloid burden
  • neurotrophic molecules: promote neuron survival
  • anti inflammatory drugs: brain inflammation reduced
  • phosphorylation inhibitors: tau hyperphosphorylation
  • nuclear hormone receptor modulators
32
Q

Origins of Parkinsons’ Disease

A
  • some genetic causes: a-synuclein, GBA, LRRK2
  • juvenile onset: detects in mitochondrial repair
  • toxic environment: insecticides, drugs
  • idiopathic: unknown cause
33
Q

Dopamine

A
  • neuromodulators
  • vulnerable to degeneration in PD
  • loss of dopamine signaling in the brain causes severe motor symptoms
  • only dopamine neurons die in the disease
34
Q

Dopamine Production

A
  1. L-DOPA: synthesized from L-tyrosine by tyrosine hydroxylase (expressed in substantia nigra)
  2. Dopamine: synthesized from L-DOPA by DOPA decarboxylase (found in brain)
35
Q

Dopamine Neurons

A
  • found in the substantia nigra and ventral tegmental area
  • neurons send axons into all brain releasing dopamine nonspecifically from varicosities
  • dopamine influences domain of brain circuitry
36
Q

Volume Transmission

A
  • broadcast transmission affecting lots of neurons simultaneously
  • G1-5 GPCR: excite/inhibit AC triggered by dopamine
  • second messenger affected by dopamine
  • affects long term plasticity of gene expression
  • changes potassium leak channel opening/closing
37
Q

Dopamine Pathways

A
  • control flow of blood through the brain: oxygen supply to circuits in brain based on activity
  • motor control: plans and executes actions
  • behavioural control
  • dopamine is the motivational chemical working on glutamate synapses to modulate excitability
  • shortage causes inability to initiate movement
38
Q

L-DOPA Treatment

A
  • temporary treatment

- rescues Parkinson rabbits

39
Q

Neural Enzembles

A
  • a thought is a neural group firing together from overlapping cells
40
Q

Dopamine Hypothesis

A
  • dopamine hypothesis
  • membrane resting potential can slightly oscillate
  • at -65 there is a higher likelihood of being depolarisation by neighbour
  • dopamine via G protein dephosphorylate leak K channels and depolarize the membrane by a few mV
  • dopamine can arrange for a neural group to toggle more towards being depolarized : higher probability of the group activating together and initiating a movement
  • without dopamine we can’t initiate anything/no neural ensembles can be selected
41
Q

a-synuclein

A
  • found in Lewy bodies (precipitates of insoluble aSYN clusters inside neurons)
  • pathology of aSYN originates in a small number of nerve cells and spread in a prion like fashion
  • no known function/no specific structure and soluble in all neurons
  • certain dominant mutations in SNCA gene cause pathology
  • eg. mutations genetically linked to familial autosomal dominant Parkinson’s disease: chromosome duplication raises likelihood
42
Q

Pathological aSYN

A
  • conversion of aSYN to toxic structure containing B sheets/cross B structure
  • B sheet structure within a stack of polypeptide chains
  • in studies of soluble recombinant protein, certain conc. in salt produces precipitates forming fibrils out of solution
  • monomers form monomers/oligomers that then can produce toxic oligomers
43
Q

Stages of Pathology

A
  • spreading of aSYN inclusions appears in a predictable order of brain locations
  • spread throughout brain regions
  • non motor systems appear before motor dsyfunction
44
Q

Gut and PD

A
  • aSYN deposits could form first in the enteric nervous system then move to the CNS
  • large intestine presence of aSYN may be a biomarker
45
Q

Prion

A
  • prions that acquire alternative conformations that become self-propogating
  • PrPc gene: unknown function. soluble and abundant in neurons
  • PrPsc: infectious form of PrP. Can copy itself/turn PrPc into infectious form. Different shape that shuts down protein synthesis
46
Q

Prion Fold

A
  • prions are defined as alternatively folded highly stable propagating protein conformers
  • normal PrPc has a helices (3) while PrPsc has B sheets
    (catalytic conversion)
  • toxic form is not fibrils - is soluble
  • toxic prions have B sheets but not insoluble fibrils
47
Q

Unifying mechanism of Neurodegeneration

A
  • proteins like pTau/aSYN involved in neuro diseases are prion like
  • depending on the prion type the spread is different
  • different ‘strains’ of proteins like tau or syn lead to different pathologies
  • each prion like precipitate causes selective vulnerability of neural populations
  • predictable spread in PD and AD
  • transfer mechanism not known yet
  • therapeutic possibilities
48
Q

Alzheimer’s AB prions

A
  • artificial amyloid fragments injected into mouse predisposed to plaques (overproduction)
  • plaques then spread from injection point through the brain (prion like)
  • hypothesis of plaques spreading across synapses
49
Q

AB seeds in growth hormone vials

A
  • growth deficient kids given growth hormone from pituitary glands of others
  • some developed early onset dementia
  • misfolded peptide is stable and can be transferred to new patients
50
Q

Prion Fold

A
  • novel folds = novel pathology
  • stereotype B sheet but different
  • disease specific folds in ordered cores of filaments
  • diagnostic capabilities
51
Q

Protein Synthesis

A
  • unfolded protein response in neurodegenerative disorders
  • therapeutic modulation of the PERK pathway
  • PERK and other pathways are protective responses of the cell
  • cells can detect misfolded proteins in the ER
  • PERK kinase autophosphorylates to phos. eLF2: less amenable to helping ribosome translate
  • prion activates the pathway and shuts down the synthesis of proteins : toxic to cells
  • administering a drug inhibiting the misfolded protein response via PERK inhibition allowed more neurons to survive with higher prion loads but with severe side effects
52
Q

Parkinson’s Causes

A
  • Familial mutation provokes aggregation or over production provokes aggregation
  • Dopamine neurons not the first to have Lewy bodies but are the most vulnerable
  • a- synuclein spreads from neuron to neuron: endogenous synuclein recruited between neurons (pathogenic protein spread)