NEUR3002 SAQs Flashcards

1
Q

Explain synapse formation

A

Synapse formation is the intricate process through which neurons establish specialized connections for communication. During development, axons extend toward their target cells, guided by molecular cues. Upon reaching their targets, presynaptic terminals form at axon endings. These terminals contain synaptic vesicles filled with neurotransmitters. On the postsynaptic side, specialized regions called dendritic spines or postsynaptic densities develop to receive signals.

The synapse is a nanoscale structure where neurotransmitters are released from the presynaptic terminal into the synaptic cleft. These neurotransmitters bind to receptors on the postsynaptic membrane, causing ion channels to open or close. This generates postsynaptic potentials, transmitting information between neurons. Synapse formation is crucial for neural circuitry, learning, and memory.

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2
Q

explain chemical synapses

A

Chemical Synapses:
Chemical synapses involve the release of neurotransmitter molecules from the presynaptic neuron’s axon terminal into the synaptic cleft. These neurotransmitters bind to receptors on the postsynaptic neuron’s membrane, leading to changes in membrane potential and generating postsynaptic potentials. This process enables the transfer of information between neurons with a brief time delay. Chemical synapses are unidirectional and allow for complex signal integration and modulation.

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3
Q

explain electrical synapses

A

Electrical synapses, also called gap junctions, involve direct physical connections between the cytoplasm of adjacent neurons. Connexin proteins form gap junctions, creating channels that permit the flow of ions and small molecules. This allows for rapid and bidirectional communication between cells. Electrical synapses are less common than chemical synapses and are often found in specific brain regions requiring rapid synchronization, such as the cardiac conduction system.

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4
Q

explain chemical vs electrical synapses

A

In summary, chemical synapses involve the release and binding of neurotransmitters to transmit signals with synaptic delay, while electrical synapses provide rapid and direct communication through gap junctions. Each synapse type has distinct properties suited to different functional requirements in neural circuits.

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5
Q

explain pathways controlling axon pathfinding

A

Guidance Cues: Axons follow gradients of guidance cues, such as netrins, semaphorins, and ephrins. These cues are expressed in specific patterns along the pathway and at target areas.

Receptors: Axonal growth cones possess receptors that detect guidance cues. These include netrin receptors (DCC, UNC5), semaphorin receptors (neuropilins, plexins), and ephrin receptors (Eph kinases).

Attractive and Repulsive Signals: Guidance cues can be attractive or repulsive. Attractive cues attract axons toward their target, while repulsive cues steer axons away from inappropriate paths.

Cytoskeletal Dynamics: Signaling from guidance cues influences the cytoskeleton of axonal growth cones, altering actin and microtubule dynamics. This affects growth cone motility and axon extension.

Synaptic Specificity: Axons are guided to specific synaptic targets by recognition molecules, ensuring precise connections in neural circuits.

In essence, axon pathfinding involves a dynamic interplay between guidance cues, their receptors, and cytoskeletal changes, leading to the intricate wiring of the nervous system.

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6
Q

explain axon pathfinding and the growth cone

A

Axon pathfinding involves the growth cone, a dynamic structure at the tip of extending axons during development.

Growth Cone Function: The growth cone is responsible for sensing its environment and guiding the axon’s direction. It integrates information from guidance cues, allowing the axon to navigate toward its target.

Molecular Sensing: Growth cones possess receptors that detect attractive and repulsive guidance cues. These cues are expressed along the pathway and at target areas.

Cytoskeletal Dynamics: Guidance cues trigger changes in the growth cone’s cytoskeleton, specifically actin and microtubules. Actin-driven protrusions enable exploratory movement, while microtubules extend axon length.

Turning Responses: Attractive cues enhance growth cone movement toward the target, while repulsive cues induce turning or retraction, redirecting axon trajectory.

Synaptic Formation: Once the growth cone reaches its target, it transforms into a presynaptic terminal, establishing functional connections.

In summary, the growth cone is a specialized structure that directs axon pathfinding. It responds to molecular cues, orchestrates cytoskeletal changes, and guides axons to their precise targets, crucial for establishing neural circuits.

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7
Q

explain bipolar neurons

A

Bipolar neurons have two distinct processes extending from their cell body—an axon and a dendrite. They are commonly found in specialized sensory organs like the retina of the eye and the olfactory epithelium.

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8
Q

Explain unipolar neurons

A

Unipolar neurons have a single process extending from their cell body, which then branches into two distinct processes. One branch functions as an axon and the other as a dendrite-like structure. Unipolar neurons are often sensory neurons transmitting information from sensory receptors to the CNS.

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9
Q

Explain multipolar neurons

A

Multipolar neurons have multiple processes extending from their cell body—typically one axon and multiple dendrites. These neurons are the most common type and are found in the central nervous system (CNS) as interneurons and motor neurons.

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10
Q

explain Neuronal morphology

A

Neuronal morphology refers to the diverse shapes and structures of nerve cells (neurons) that allow them to perform their specialized functions in the nervous system.

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11
Q

explain electron microscopy for mapping neurological connections

A

Electron microscopy is a powerful technique used to visualize the ultrastructural details of neural connections at the nanoscale level. In the context of mapping neurological connections, electron microscopy allows researchers to observe the intricate morphology of synapses, dendrites, and axons, providing insights into the precise organization of neural circuits. This method involves fixing, embedding, and sectioning neural tissue, followed by staining and imaging using electron microscopes. The high resolution of electron microscopy enables the identification of synaptic vesicles, receptor densities, and other subcellular components, facilitating the detailed analysis of neural connectivity within the brain.

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12
Q

explain fluorescent dye labelling (Dil, DiO, LY, biocytin) for mapping neurological connections

A

Fluorescent dye labeling is a technique used to trace and visualize neural connections in biological tissues. Different dyes, such as Dil, DiO, LY, and biocytin, are employed for this purpose.

Process: Neurons are filled with or exposed to the fluorescent dye, which becomes incorporated into their membranes or cytoplasm. The dye emits fluorescence when exposed to specific wavelengths of light.

Labeling Specificity: Different dyes target different components. For example, Dil and DiO integrate into cell membranes, allowing visualization of axons and dendrites. LY (Lucifer Yellow) is often used for tracing dye-coupled neurons in intact tissue. Biocytin is used for whole-cell patch-clamp recording, revealing detailed morphologies of neurons.

Imaging: Fluorescently labeled neurons are imaged using fluorescence microscopy. Exciting the dye with specific wavelengths of light causes it to fluoresce, revealing the shape, trajectory, and connections of labeled neurons.

Applications: Fluorescent dye labeling helps researchers map neural circuits, identify connections, and understand the spatial organization of neurons within tissues.

In summary, fluorescent dye labeling involves incorporating dyes into neurons to visualize their structures and connections using fluorescence microscopy. Different dyes serve specific purposes in mapping neurological connections.

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13
Q

explain antibody labelling for mapping neurological connections

A

Antibody labeling is a technique that utilizes specific antibodies to target and visualize proteins or antigens within neural tissues, aiding in the mapping of neurological connections.

Process: Specific antibodies are designed to bind to particular proteins or antigens present in neurons or their components. These antibodies are often conjugated with fluorescent or other detectable markers.

Labeling Specificity: By targeting specific proteins, antibody labeling reveals the distribution and localization of these molecules within neurons, axons, dendrites, and synapses.

Imaging: After applying the labeled antibodies to tissue sections or cultured neurons, fluorescence microscopy or other imaging methods are used to visualize the labeled structures.

Applications: Antibody labeling helps researchers identify neural populations, study synaptic proteins, and map connections within brain regions.

In summary, antibody labeling involves using antibodies that specifically bind to proteins or antigens within neural tissues to visualize their distribution and connections, contributing to the understanding of neural circuitry.

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14
Q

explain genetically encoded labelling for mapping neurological connections

A

Genetically encoded labeling involves introducing genes that produce fluorescent or other markers into neurons, allowing visualization of neural connections in a targeted manner.

Process: Genes coding for fluorescent proteins (e.g., GFP) or other markers are introduced into neurons using viral vectors or transgenic techniques.

Labeling Specificity: Neurons expressing the introduced genes will produce the marker proteins, enabling visualization of their morphology and connections.

Imaging: Fluorescence microscopy or other imaging methods are used to visualize the labeled neurons and their connections.

Applications: Genetically encoded labeling provides precise control over which neurons are labeled, making it useful for tracing specific neural circuits and understanding connectivity patterns.

In summary, genetically encoded labeling involves introducing genes that produce markers into neurons, enabling visualization of their connections and aiding in the study of neural circuits.

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15
Q

explain trans-synaptic labelling for mapping neurological connections

A

Trans-synaptic labeling is a technique used to trace neural connections by exploiting the transfer of a labeled molecule from one neuron to another through synapses.

Process: A modified virus is used to deliver a genetically encoded marker, such as a fluorescent protein, into a specific target neuron. This marker is then transferred to connected neurons through synapses.

Labeling Specificity: As the marker spreads from the initially labeled neuron to its connected partners, it highlights the interconnected neural circuit.

Imaging: Fluorescence microscopy or other imaging methods are employed to visualize the labeled neurons and their connections.

Applications: Trans-synaptic labeling allows researchers to map neural circuits and identify connected regions within the brain.

In summary, trans-synaptic labeling involves the use of viral vectors to introduce markers into neurons, which are then transmitted through synapses to label connected neurons, aiding in the mapping of neural connections.

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16
Q

explain connectivity flow (ascending/descending tracts) for mapping neurological connections

A

Connectivity flow refers to the directional pathways along which neural signals travel, either ascending (from lower to higher brain centers) or descending (from higher to lower brain centers) through the nervous system’s tracts or pathways.

Ascending Tracts: Ascending tracts carry sensory information from sensory receptors to higher brain centers. They convey details about touch, temperature, pain, and other sensory modalities. Examples include the spinothalamic tract for pain and temperature sensations and the dorsal column-medial lemniscus pathway for fine touch and proprioception.

Descending Tracts: Descending tracts transmit motor commands and regulatory signals from the brain to lower spinal levels. They control voluntary and involuntary movements, reflexes, and autonomic functions. Examples include the corticospinal tract, which controls voluntary motor movements, and the reticulospinal tract, which regulates autonomic functions.

Mapping Connections: Understanding the connectivity flow of these tracts helps researchers map the neural circuits involved in sensory perception, motor control, and various cognitive functions.

In summary, connectivity flow involves the directional transmission of neural signals through ascending and descending tracts, enabling sensory perception and motor control across the nervous system.

17
Q

explain confocal microscopy for mapping neurological connections

A

Confocal microscopy is a technique used to visualize and map neurological connections with improved optical resolution and depth focus.

Principle: Confocal microscopy employs a focused laser beam to illuminate a specific plane of the sample. A pinhole aperture blocks out-of-focus light, allowing only the in-focus light from the illuminated plane to enter the detector.

Optical Sectioning: By eliminating out-of-focus light, confocal microscopy provides sharp images of thin sections within complex neural tissues, enhancing clarity and reducing blur.

Fluorescence Imaging: Fluorescent dyes or proteins are often used to label neural structures, allowing researchers to specifically visualize axons, dendrites, and synapses.

3D Reconstruction: Confocal microscopy can capture serial optical sections at different depths, facilitating the reconstruction of 3D structures within neural tissues.

Applications: Confocal microscopy is valuable for mapping neuronal morphology, connections, and synapses, aiding in the understanding of neural circuitry.

In summary, confocal microscopy enhances the visualization of neurological connections by providing improved optical sectioning, fluorescence imaging, and 3D reconstruction capabilities, enabling detailed mapping of neural structures.

18
Q

explain two-photon microscopy for mapping neurological connections

A

Two-photon microscopy is a specialized imaging technique used to visualize and map neurological connections with enhanced resolution and reduced photodamage.

Principle: Two-photon microscopy uses two photons of lower energy each to excite fluorescent molecules within a focused spot. This occurs only at the focal point, allowing deeper tissue penetration and minimizing photodamage.

Deep Imaging: Because the excitation occurs only at the focal point, two-photon microscopy can penetrate deeper into thick tissues, enabling visualization of structures within intact neural circuits.

Fluorescent Labeling: Fluorescent dyes or proteins are used to label neural elements, such as axons, dendrites, and synapses, enabling specific visualization of these structures.

Reduced Photodamage: The lower-energy photons used in two-photon microscopy cause less photodamage to biological specimens, making it suitable for prolonged imaging sessions.

Applications: Two-photon microscopy is valuable for mapping connections within deep neural tissues, providing insights into neural circuitry and plasticity.

In summary, two-photon microscopy offers enhanced imaging depth and reduced photodamage, making it a powerful tool for mapping neurological connections and understanding intricate neural networks.

19
Q

explain light-sheet microscopy for mapping neurological connections

A

Light-sheet microscopy is an imaging technique used to map neurological connections by providing high-resolution imaging with minimal photodamage and photobleaching.

Principle: Light-sheet microscopy illuminates a sample with a thin sheet of laser light perpendicular to the imaging plane. This minimizes light exposure outside the focal plane, reducing photodamage and improving imaging depth.

Fast Imaging: Light-sheet microscopy captures images rapidly, reducing the risk of photobleaching and enabling the visualization of dynamic neural processes.

3D Imaging: By capturing multiple 2D slices, light-sheet microscopy facilitates the reconstruction of 3D structures within neural tissues, aiding in the understanding of complex connections.

Fluorescent Labeling: Fluorescent dyes or proteins are used to label neural structures, allowing specific visualization of axons, dendrites, and synapses.

Applications: Light-sheet microscopy is advantageous for mapping large volumes of neural tissue, enabling the investigation of neural circuitry and developmental processes.

In summary, light-sheet microscopy offers rapid, high-resolution 3D imaging with reduced photodamage, making it a valuable tool for mapping neurological connections and studying neural dynamics.

20
Q

explain clearing the brain to improve imaging

A

Clearing the brain involves removing light-scattering molecules and lipids from neural tissue, enhancing transparency and allowing better imaging of internal structures.

Principle: Chemical agents are used to dissolve lipid and protein molecules that scatter light, causing opacity in brain tissue.

Transparency: Clearing methods render brain tissue transparent, allowing deeper light penetration and better visualization of internal structures.

Fluorescence Retention: Clearing preserves fluorescent labels, enabling visualization of labeled neurons, axons, and synapses within the transparent brain.

3D Imaging: Transparent brain tissue facilitates 3D imaging, as light can pass through and capture details deep within the tissue.

Applications: Clearing techniques enhance the study of neural connections, circuitry, and brain organization by enabling clearer and deeper imaging.

21
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