My ICS Flashcards
Deaths are referred to the coroner when:
Presumed natural, but unknown - not seen by doctor in last 14 days or longer
Presumed iatrogenic (from care during surgery and shortly after)
Presumed unnatural, from accidents, industry, suicide, unlawful killing etc
Which autopsies are performed by a histopathologist?
- Accidental deaths or suicide
- Natural deaths
- Drowning
- Suicide
- Accidents
- Road traffic deaths
- Fire deaths
- Industrial deaths
- Peri/postoperative death
Which autopsies are performed by a forensic pathologist?
- Deaths which may be deliberate/ criminal
- Homicide
- Death in custody
- Neglect
- Any from histopathologist list that may be due to the action of a third party
Stages of autopsy
- History/ scene investigation
- External examination; photography, microbiology
- Digital autopsy; CT scanning
- Maybe (50% ish) conventional dissection of parts including genetics and histology
- Rarely full body dissection
Describe external examination in autopsy
- Identification: sex, age, jewellery, body modification, clothing
- Evidence of disease and its treatment
- Evidence of injuries
- if suspicious, referred to forensic pathologist
Describe evisceration in autopsy
- Y-shaped incision (from behind ears down to clavicle the down to midline)
- Open all body cavities
- Examine organs in situ, then remove organs and examine them
- remove brain
Which organ system is typically avoided in autopsy and why?
Avoid the lower GI tract if possible - presents infection risk
Hypertrophy
Increase in the size of a tissue caused by increase in the size of constituent cells
Hyperplasia
Increase in size of tissue caused by increase in number of constituent cells
Atrophy
A decrease in size of tissue due to decrease in number of constituent cells, or decrease in size of cells.
Causes of atrophy
Disease state or in limb injury, in unused muscles.
Metaplasia
Change in differentiation of the cell from one fully-differentiated type to another.
Give an example of metaplasia
Damaged ciliated columnar epithelium can differentiate to squamous epithelium to resist further damage. This is due to basal reserve cells differentiating into squamous cells rather than ciliated cells as intended.
Dysplasia
(Imprecise term) Morphological changes seen in cells in the progression to becoming cancer.
Apoptosis
Programmed cell death
- Orderly event taking place in single cells
- Important process in normal cells turnover in the body, preventing cells with accumulated genetic damage from dividing and producing cells which could develop into cancer cells.
Protein involved in apoptosis
Protein p53 checking for DNA damage. If there is DNA damage the cell will trigger a series of proteins, leading to a release of enzymes within the cell which eventually autodigest the cell. Many of these enzymes are caspases, involved in a cascade of activated enzymes.
Necrosis
Traumatic cell death
Destruction of large numbers of cells by an external factor
Causes of necrosis
- Infarction due to loss of blood supply
- Frostbite
- Toxic venom from reptiles/ insects
- Pancreatitis - necrosis of pancreas can occur if the duct is blocked, and pancreatic enzymes can digest themselves
- Avascular necrosis of bone - eg scaphoid after falling on hand can lose blood supply and die.
What occurs following necrosis if tissue cannot regenerate?
After necrosis, macrophages phagocytose dead cells and typically the necrotic tissue is replaced by fibrous scar tissue. This is only if the tissue cannot regenerate.
Resolution
Initiating factor removed, and the tissue is undamaged or able to regenerate
Repair
Healing by fibrosis (scar formation) when there is substantial damage to the connective tissue framework and/or the tissue lacks the ability to regenerate specialised cells
Cells able to regenerate
- in the liver, hepatocytes can regenerate
- in the lungs, pneumocytes can regenerate, but alveolar walls cannot regenerate
- all blood cells can regenerate
- Osteocytes
- the gut epithelium and skin epithelium can regenerate
Inflammation
The body’s response to injury or infection using different types of cells and molecules.
Process of repair
- Dead tissues and acute inflammatory exudate are first removed from the damaged areas by macrophages
- the defect then becomes filled by the ingrowth of a specialised vascular connective tissue - granulation tissue
- the granulation tissue then gradually produces collagen to form a fibrous (collagenous) scar constituting the process of repair
Why can’t dividing cells divide forever?
Dividing cells eventually stop dividing due to the shortening of telomeres each time DNA divides. Eventually the telomeres are too short, and the cell is unable to divide.
Why do non-dividing cells die?
Non-dividing cells will die once they have accumulated a certain amount of damage to their cellular systems:
- DNA mutations
- Cross-linking of proteins
- Loss of calcium influx controls
- Accumulation of toxic by-products of metabolism
- Damage to mitochondrial DNA
- Loss of DNA repair mechanism
- Free-radical generation
- Activation of ageing and death genes
Congenital
Present at birth
Does not necessarily mean genetic, can be developmental eg foetal alcohol syndrome
Acquired
Caused by non-genetic environmental factors, can be congenital (eg foetal alcohol syndrome)
Mendelian inheritance types
Autosomal inheritance: on an autosome (non-sex)
- Autosomal dominant: only one copy of the gene needed to cause disease (DD or Dr)
- Autosomal recessive: both copies of the gene are required to cause the disease (rr)
- Autosomal co-dominant: eg blood type, combination of both inherited alleles (Dr)
Polygenic inheritance
- Many genes that each increase risk a small amount all together in one person can greatly increase risk.
- This can cause a family history without a single causative mutated gene.
Features of Inflammation
Redness (rubor): An acutely inflamed tissue appears red due to the dilation of small blood vessels within the damage area
Heat (calor): Increase in temperature is seen only in peripheral parts of the body, such as the skin. Due to increased blood flow (hyperaemia) through the region, resulting in vascular dilation and the delivery of warm blood to the area. Systemic fever, which results from some of the chemical mediators of inflammation, also contributes to the local temperature
Swelling (tumor): Swelling results from oedema - the accumulation of fluid in the extravascular space as part of the fluid exudate. Swelling also results from the physical mass of the inflammatory cells migrating into the area. As the inflammation response progresses, formation of new connective tissue contributes to the swelling
Pain (dolor): Results from the stretching and distortion of tissues due to inflammatory oedema and from pus under pressure in an abscess cavity. Some of the chemical mediators of acute inflammation, including bradykinin, the prostaglandins and serotonin, are known to induce pain.
Loss of function: Movement of an inflamed area is consciously and reflexively inhibited by pain. Severe swelling may physically immobilise the tissues.
Acute Inflammation
- Sudden onset
- Short duration - few hours to a few days
- Usually resolves - Resolution of damage, disappearance of leukocytes, full regeneration of tissue
Causes of acute inflammation
- Infection
- Corrosive chemicals
- Physical agents
- Hypersensitivity
- Bacterial toxins
- Tissue necrosis
Blood vessel changes in acute inflammation
- Blood vessels around the site dilate and leak a protein-rich fluid exudate
- Endothelial cells become sticky in areas of inflammation so that inflammatory cells adhere to them, and become porous to allow them to pass into tissue.
- The smooth muscle of arteriolar walls form precapillary sphincters which regulate blood flow into the capillary bed. in acute inflammation, these sphincters relax to increase the blood flow through the capillaries (adds redness and heat)
- When sphincters are Open, more fluid goes out into tissue (causes swelling), even at venous end of capillaries.
Which lymphocytes are involved in acute inflammation?
Neutrophil polymorphs and macrophages
What do neutrophils do in acute inflammation?
- The first cells that arrive at the site
- Adhere to the injured vascular endothelium - pavementing, due to interaction between paired adhesion molecules on leukocyte and Endothelial surfaces.
- Emigrate in through the walls of venules and small veins
- Phagocytose debris and bacteria, and contain lysosomes which kill and digest the bacteria.
- Form abscesses - large bundles
- Release chemicals to attract other inflammatory cells ie macrophages.
What do macrophages do in acute inflammation?
Macrophages arrive after neutrophils and phagocytose bacteria, debris, and dead neutrophils.
May present antigen to lymphocytes to induce a secondary immune reaction
Chronic Inflammation
- Slow onset
- Long duration
- May never resolve
Causes of chronic inflammation
- May be due to persistent causal agent of acute inflammation
- Alternatively, may represent a primary disease process:
- Resistance of an infective agent to phagocytosis/ intracellular killing
- Endogenous materials
- Exogenous materials
Sequence of Chronic Inflammation
- No or very few neutrophils
- Macrophages and lymphocytes, then usually fibroblasts
- Granulomas appear in some types of chronic inflammation - collection of macrophages attempting to kill bacteria, surrounded by lymphocytes. This may be seen around foreign material in tissue.
- Chronic inflammatory cells (especially macrophages) generate high levels of reactive oxygen and nitrogen species to fight Infection.
Describe the immune system
Made up of organs, tissues, cells including leukocytes, molecules and soluble factors.
Protects from microorganisms, removes toxins, promotes inflammation, destroys tumour cells.
Phagocytes
- Form a phagosome around pathogens
- Destroy some pathogens with cytoplasmic granules where granules fuse with phagosome and drop pH to kill the pathogen, or digest with lysosomes
- Oxidative burst: produce highly reactive oxygen eg H2O2 to Destroy pathogens
Antigen-presenting cells
Present antigens to T-cells following phagocytosis (MH class 2) or infection (MH class 1)
Granulocytes
- contain granules in cytoplasm
- all other than mast cells are polymorphonuclear
Which leukocytes are phagocytes?
Neutrophils
Eosinophils
Monocytes
Dendritic cells
Macrophages
Which leukocytes are granulocytes?
Basophils
Mast cells
Neutrophils
Eosinophils
Which leukocytes are antigen-presenting cells?
Monocytes
Dendritic cells
Macrophages
Lymphocytes
Basophils
- Bi-lobed nucleus obscured by the staining of cytoplasmic granules - stain purple
- Granules contain histamine, involved in the inflammatory response, and to prevent coagulation and agglutination
- Aid in fighting parasites - involved in inflammatory response
- Circulating form of mast cells, mature into mast cells
Mast cells
- Granulocytes, non-phagocytic - involved in the inflammatory response
- Contain histamine in granules - degranulate to release histamine
Neutrophils
- Most abundant white blood cell - 70%
- Last around one day so constantly produced
- Granulocytes, phagocytic
- Have a multi-lobed nucleus and a granular cytoplasm
- Release cytokines to reduce inflammation
- Circulate in blood and invade tissue spaces
Eosinophils
- Granulocytes, phagocytic
- Bi-lobed nucleus
- Stain with eosin- cytoplasm goes bright orange
- Distinctive large red cytoplasmic granules with crystalline inclusions
- Antagonistic in action to basophils and mast cells
- Neutralise histamine to restrict inflammation
- Contain lozenge-shaped granules with crystalline cores
Monocytes
- Immature cells which reside in the circulation
- Phagocytic
- Reniform (kidney bean shaped) mononuclear nucleus
- Differentiate into one of several cell types, found in many places
- Can differentiate into macrophages
- Some differentiate into antigen-presenting cells
- Have small cytoplasmic granules
Dendritic cells
- Phagocytes
- Typically ‘on patrol’ in epithelial tissues for non-cell
- Long tentacle arms (dendrites) to detect non-cell in tissues
- Antigen-presenting cells - present antigens to T cells
- Release cytokines to recruit other cells
- Consume large proteins
Macrophages
- Phagocytes, antigen-presenting cells
- Large and granular, lots of cytoplasm
- Release cytokines to recruit other cells
- Stay in connective tissue and lymphoid organs, not in the blood
Lymphocytes
B-cells: develop into plasma cells and secrete antibodies
T-cells: involved in immunity, many categories (T-regulator, T-helper, cytotoxic, natural killer cell)
Natural killer cells are involved in anti-tumour response
- Very few cytoplasmic inclusions resulting in a clear cytoplasm
- Both look the same with H+E
- Mononuclear
- Very little cytoplasm
Innate vs adaptive immunity
Innate Immunity is nonspecific and acts as the first line of defence. Adaptive Immunity is specific and has a response specific to the antigens present.
Innate immunity
- Fast response with no memory (remains unchanged)
- Starts with barriers, then inflammation, then microbial killing mechanisms
- Nonspecific cells: phagocytic cells, natural killer cells
- blood proteins eg complement system
How does the immune system detect microbes?
The innate immune system can recognise structures expressed by large groups of pathogens (pathogen-associated molecular patterns), and the common biologic consequences of infection (damage-associated molecular patterns). The cells recognise general patterns rather than very specific sequences of amino acids.
Which lymphocytes detect microbes in blood vs tissues?
In blood: monocytes and neutrophils
In tissues: macrophages and dendritic cells
Describe secreted and circulating pattern recognition receptors
- Antimicrobial peptides secreted by epithelia and phagocytes which activate complement
- Found within fluids lining epithelial cells eg in the lungs
How do secreted and circulating PRRs target bacteria?
Target bacteria by:
- damaging the cell membrane to burst the cell open
- invading into the cell and damaging from within
- bind to receptors to impair movement of ions
- bind to flag the bacterium for phagocytosis
What do PRRs on cell surfaces do?
Cell surface receptors typically detect bacteria, and induce the release of pro-inflammatory cytokines.
What do PRRs on organelles do?
Endosomal PRRs (on organelles) typically detect abnormal RNA and DNA, and induce release of type 1 interferons, which have antiviral effects
Why do these receptors dimerise?
Most receptors dimerise with themselves or other receptors, to expand the amount of ligands they can bind to.
Types of cell-surface PRRs
Lectin receptors
Toll-like receptors
Scavenger receptors
Lectin receptors
- expressed by macrophages and dendritic cells
- bind to certain foreign carbohydrates on microbes (Many types, Many microbes)
- use carbohydrate recognition domains (CRD)
Toll-like receptors
Many types - recognise different common foreign molecules on microbes eg flagella, foreign molecule DNA and RNA
Scavenger receptors
- large family of receptors
- mainly bind to foreign lipids and lipoproteins, but a variety of ligands
Types of endosomal PRRs
RIG-I-like receptors
NOD-like receptors
RIG-I-like receptors
- detect viral RNA in the cytoplasm
- some recognise short strands, some long strands
- cause production of interferons, which have anti-viral effects, and pro-inflammatory cytokines
NOD-like receptors
- detect cytoplasmic bacteria
- regulate inflammatory and cell death responses
- NOD1 + NOD2 recognise peptidoglycan in Bacterial cell walls
Damage associated molecular patterns
Endogenous molecules created by self cells to alert the host to tissue injury to initiate repair. eg molecules broken off from the cell, or internal molecules released in damage
The damage chain reaction
- in some cases, DAMPs can be harmful - tissue damage releases DAMPs, which attach to toll-like receptors and induce release of pro-inflammatory mediators
- pro-inflammatory mediators can cause tissue damage however, creating a vicious cycle of tissue damage
- high levels of DAMPs are associated with many inflammatory and autoimmune diseases
Stages of extravasation (diapedesis)
- Tethering: Neutrophil tethers to the surface of endothelial cells, slows down
- Firm adhesion: becomes static on the endothelium
- Transmigration: Passes through the gaps in the endothelial wall
- Locomotion: Moves along a chemokine gradient to the site of infection
Innate immunity responses to microbes
- Phagocytosis
- Release of free radicals
- Release of nitric oxide
- Release of enzymes eg lysozymes
- Proteins such as defensins
- pH changes
- Apoptosis
Adaptive Immunity
- Significantly slower than innate (the first time)
- highly specific cells with immunologic memory which circulate around tissues and lymph
Why is adaptive immunity needed?
- Microbes can evade innate immunity, eg with proteases and decoy proteins
- Intracellular viruses and bacteria can ‘hide’ from innate immunity
- The innate immune response is slower than the secondary adaptive response
Cell-mediated response
- Interlay between antigen presenting cells and T-cells, which requires intimate cell to cell contact
- T lymphocytes only respond to presented antigens, not soluble antigens
Typical use of MCH molecules
Typically, cells are constantly presenting self antigens on MHC molecules - all nucleated cells have MHC class 1 - but only antigen-presenting cells have MHC class 2.
When are antigens presented on MHC molecules?
- When Infection occurs, a microbe antigen is presented on the MHC molecule
- This is either in the case of a virus invading a cell (presented on MHC1), or following phagocytosis (presented on MHC2)
How do T-cells respond to each type of MHC presenting antigens?
- Typical cells, presenting on MHC class 1, will be killed by a cytotoxic T cell to kill the intracellular pathogens
- Antigen-presenting cells, with MHC2, will activate T-helper cells
What occurs when T-cells activate?
- Clonal expansion - cells replicate into millions of copies
- Differentiation, to make T cells more active and give them effector functions
- Induce B cells to make antibodies to the pathogen
- Form memory cells for faster secondary response
What do T-cell differentiate into depending on the environment?
MHC1 receptor detected: CD8 cytotoxic cells
MCH2 receptor detected: CD4 cells
High interleukin 12: CD4 -> TH1 cells
Low interleukin 12: CD4 -> TH2
Action of CD8 cells
- Naive cell finds its complementary antigen on a MHC1 receptor (infected cell)
- develops into cytotoxic T-cell
- finds infected host cells with the same antigen and uses perforin and granulysin to kill them
- releases interferon gamma which activates macrophages and causes them to increase phagocytosis
- recruits other inflammatory cells via chemotaxis
Action of TH1 cells
Secrete interferon gamma to help antigen-presenting cells phagocytose
Action of TH2 cells
TH2: humoral response - secretes interleukins 4,5,10, which help B-cells produce antibodies.
Humoral response
- B-cells express membrane-bound antibodies (IgM or IgD monomer) - each B cell can only make one antibody, which will only bind to one epitope on one antigen.
B-cells as antigen presenting cells
- B cells can also function as an antigen-presenting cell to TH2 cells via MHC2
- antigen binds to antibody on the surface of the B-cell
- the B-cell takes up the antigens
- presents antigens on MHC2 to activate T cell
TH2 cells activating B-cells
- B-cell displays an antigen on MHC2
- TH2 binds to peptide displayed by B-cell and causes secondary activation
- The TH2 cell sends signals to the B-cell to divide (clonal expansion)
Soluble factors
Complement, cytokines, chemokines, and antibodies. Make up the immune system alongside Leukocytes and lymphoid organs and tissues.
Complement
Group of around 20 serum proteins secreted (in an inactive form) by the liver that need to be activated to be functional
Complement cascade
One complement molecule gets activated and is converted to an enzyme, which activates another complement protein, process repeats
Models of action of complement proteins
- Direct lysis
- Chemotaxis: attract more leukocytes to the site of Infection
- Opsonisation: Coat the invading organism
How can complement be activated? (3)
- Classical: antibody bound to a antigen on a microbe
- Alternative: complement itself binds to the microbe
- Lectin: Lectin binds to a microbe, and activates complement
C3A + C5A action
Complement proteins which bind to receptors on leukocytes to draw them to sites of infection
C3B action
Opsonisation: Inserts itself into the membrane of bacteria, to attract white blood cells to bind to the bacteria.
MAC action
Four complement proteins which form pores in the membrane of pathogens, leading to osmolysis.
Cytokines
- proteins secreted by immune and non-immune cells
- regulate immune response
- can be pro-inflammatory and anti-inflammatory
Types of cytokines
- interferons
- Interleukins
- Colony stimulating factors
- Tumour necrosis factors
- Chemokines
Interferons
- induce a state of antiviral resistance in uninfected cells and limit the spread of viral infection
- interferon alpha and beta are produced by virus infected cells
- interferon gamma is released by activated macrophages and T-helper 1 cells
Interleukins
- produced by many cells, over 30 types
- can be pro-inflammatory (eg IL1) or anti-inflammatory (eg IL10).
- Can cause cells to divide, differentiate and secrete factors.
Colony stimulating factors
- involved in directing the division and differentiation on bone marrow stem cells in haematopoiesis
- can drive production of different types of immune cells depending on the type of Infection
Tumour necrosis factors
- not just involved in tumour necrosis!!
- mainly a pro-inflammatory molecule (eg TNF alpha and beta)
- mediate inflammation and cytotoxic reactions
Chemokines
- Chemotactic cytokines
- Group of around 40 proteins that direct the movement of leukocytes from the bloodstream into the tissues or lymph organs by binding to specific receptors on cells.
- Like magnets, drawing cells to the site of infection
- Different types attract different types of leukocytes - depends on type of infection or injury
Antibodies
- bind specifically to antigens - soluble - secreted - some bind to antibody receptors on the surface of immune cells - bind to an epitope on an antigen with high affinity
Classes of antibodies
- IgG
- IgA
- IgM
- IgE
- IgD
IgG
- Most abundant antibody - around 70%
- Constant region Fc binds to receptors on the surface of white blood cells (docking site)
- Fab region binds to non-cell elements, 2 binding sites
- 4 subclasses, IgG1-4
- Held together with disulphide bonds between heavy and light chains
IgM
- Around 10% of Igs in serum
- Pentamer
- Mainly found in blood as it is too large to cross endothelium (+ blood-brain barrier)
- Responsible for the primary immune response, initial contact with antigen, IgG comes in after
- Can have a monomeric form mIgM, used as an antigen-specific receptor on B-cells
IgA
- Around 15% of Igs in serum
- 80% of serum IgA is as a monomer
- Main antibody in bodily mucous secretions eg saliva, genitourinary, bronchial, milk, colostrum as a dimer - secretory IgA or sIgA
- 2 subclasses , IgA1+2
IgD
- Only 1% of Ig in serum
- Can be bound as a monomeric form to mature B cells as mIgD, similar to mIgM
IgE
- Only 0.05% of Ig in serum
- Mainly membrane-bound on mast cells
- Basophils and mast cells express IgE specific receptors with high affinity for IgE
- Binding to antigen causes release (degranulation) of histamine by these cells
- Involved in allergy response
Hypersensitivity
The recognition of foreign antigen by the immune system causing tissue damage alongside destruction of the antigen. Overreaction to exogenous antigens leads to allergy, overreaction to endogenous antigens causes autoimmunity.
Types of hypersensitivity
Four main types:
- Type I: Immediate hypersensitivity due to activation of IgE antibody on mast cells or basophils
- Type II: antibody to cell-bound antigen
- Type III: immune complex reactions
- Type IV: delayed hypersensitivity mediated by T-cells.
Type I hypersensitivity
Type I hypersensitivity is an immediate reaction to environmental antigens mediated via IgE antibodies.
Allergens
Allergens are antigens which trigger allergic reactions, with the ability to induce a strong IgE response.