multifactorial Flashcards
exam 1
distinct variant of a phenotype characteristics that may be inherited
trait
results from the influence of only one gene
monogenic trait
results from the combined influence of multiple genes
polygenic trait
results from the combined influence of multiple genes and environmental factors
multifactorial trait
combined contribution of genes and environmental factors in the causation of a particular disease or trait
multifactorial inheritance
(2) multifactorial traits
(1) Quantitative
(2) threshold
continuous range of measurement, numerical scale, follows a normal or bell-shaped distribution in populations
Quantitative
examples of quantitative traits
height, weight, blood pressure, intelligence
trait is either present or absent
threshold
liability follows a bell-shaped distribution, and those individuals exceeding the threshold on the liability scale will express the trait
threshold
examples of threshold traits
club foot, diabetes, cleft lip and palate, pyloric stenosis
total genetic and environmental factors that contribute to development of a trait
liability
amount of liability required to exhibit the trait
threshold
true or false: liability may be different for males and females
true
m?f for cleft lip and palate
m>f
m?f for congenital hip dysplasia
f>m
m?f for pyloric stenosis
m>f
m?f for autism
m>f
signs of multifactorial inheritance (4)
(1) familial concentration of a disease or trait without a clear mendelian pattern of inheritance
(2) absence of clear biochemical defects resulting from a single abnormal gene
(3) considerable variation in severity and expression of the phenotype
(4) gender difference in the frequency of occurrence
____ ____ are less clear in multifactorial traits than for those that follow mendelian inheritance
recurrence risks
_____ is obtained by observation in family or population studies
data
5 recurrence risk rules
- the greater the severity of the proband, the greater the recurrence risk
- recurrence risk is greater if the proband is of the less commonly affected sex
- recurrence risk is higher if more than one family is affected
- recurrence risk decreases rapidly in more distantly related individuals
- recurrence risk for first degree relatives is approx. the square root of the population incidence of the trait
true or false:
the lesser the severity, the higher the recurrence risk
false–> higher severity, higher risk
is the trait due to genes, environment, or both?
estimate heritability
can we locate the causal genes for this trait?
perform linkage analysis ‘family studies’
can we identify the specific risk alleles for this trait?
perform association studies “ population-based studies”
measure of the proportion of the total phenotypic variance of a trait in a population that is due to genetics
heritability
the value of heritability is always a fraction between ___ and ___
between 0 and 1
h2 of 1= entirely genetic –> phenotypic variance=
genetic variance
estimated from the incidence of a trait among relatives of a known degree of relatdness
heritability
twin studies, observations of familial aggregation
heritability
heritability of a trait is estimated from concordance rates for monozygotic versus dizygotic twins
twin studies
Monozygotic twins share ____% of their genetic information while dizygotic twins share ___% of their genetic information
100% MZ
50% DZ
true or false: if DZ twins share a trait more often than MZ twins, then this suggests that the trait is influenced by genetic factors
false, if DZ share a trait more than it is influenced y genetics
used to determine whether the inheritance of a genetic marker is associated with a particular disease/ trait in a family
linkage analysis
goal for linkage analysis
to identify a region of the genome which cosegregates with the disease
historically, it was used to identify genetic regions where a ____ _____ gene could be found
candidate disease
most effective for regions with a _____ ____. Less effective in locating regions which play a role in _____ _____
large effect and less effective in multifactorial traits
two genetic markers are located close enough together on a chromosome to be inherited together. a recombination is even is unlikely to occur between them
linkage
a statistical measure of how likely it is for two genetic marker to be linked. based on recombination frequency
LOD score
LOD>3
statistically significant evidence of linkage
LOD
statistically significant evidence against linkage
goal of association studies
to identify marker alleles for a particular disease/trait within an already designated region or across the genome
based on the hypothesis that a particular allele occurs more frequently in individuals with the disease than in controls
association studies s
uses SNPs
association studies
___ ___ ___ changes in the DNA which occur throughout the genome
single base pair
association studies can identify genes with a ___ ____ ___ which may play a role multi factorial disease
small overall effect
(2) limitations of association studies
(1) association of a SNP allele with a phenotype does not prove that once causes the other(correlation does not equal causation)
(2) a larger number of markers are needed because the marker allele needs to be closely linked to the disease locus
GWAS
genome wide association studies
variant with ____ frequency in cases than controls in GWAS
higher
true or false: risk of developing Alzheimer’s disease doubles in individuals with an affected first degree relative
Alzheimer’s disease
which apolipoprotein has been studied extensively as a risk factor in Alzheimer’s disease
APOE
follows a bell-shaped curve in the general population
liability
fragile x syndrome follows which type of inheritance?
non-mendelian
Cleft palate follows which type of inheritance
threshold
marfan follows which type of inheritance?
mendelian
height follows which type of inheritance?
quantitative
who has higher liability for a condition that is more common in males and has the condition?
- female
- male
female
multifactorials traits > or < 100% concordance of monozygotic twin
less than
dizygotic concordance is > or < than monozygotic concordance
less than
limitations with GWAS
reproducibility
population based study
GWAS
Family based study
Linkage analysis
In general, the recurrence risk for most isolated birth defects is approximately ____
4%
Concordance rate = (formula_
Concordance rate= # of all concordant pairs / # of all twin pairs
Heritability (h^2) = (formula)
H^2= (MZ concordance - DZ concordance) x 2
If a trait has 100% genetic concordance MZ=_ and DZ=+,
MZ=1 and DZ=0.5