Molecular Structure and Spectra Flashcards
What three functional groups are found in IR at 3300 cm-1
- Vinyllic hydrogen to a triple bond
- N-H bond
- O-H bond

What two functional groups are found in IR at 3100 cm-1?
- Vinyllic hydrogen to a double bond
- Carboxylic Acid
What functional group is found in IR at 2900 cm-1?
Alkane
What functional group is found in IR at 2800 cm-1?
Aldehydes.
What functional group is found in IR at 2200 cm-1?
Alkyne
What functional group is found in IR at 1700 cm-1?
Carbonyl bond
What functional group is found in IR at 1600 cm-1?
Alkane
Describe intramolecular vibrations and rotations and which is measured in IR?
- Vibrations: bonds can stretch, compress and bend like a spring. It is this vibration that is measured in IR-spec.
- Rotations: molecules can rotate. Rotations produce waves mainly in the microwave region. However, part of the rotation spectra does overlap with the vibration spectra.
Is the frequency of vibration higher or lower in the left peaks of IR?
Peaks toward the left have higher frequency of vibration.
Hydrogen bonds cause (broad/sharp) peaks?
Broad peaks are due to hydrogen bonding
Anything above 3000 cm-1 in IR involves what type of bond:
Anything around 3000 cm-1 involves a hydrogen atom, be it O-H, N-H, or C-H.
Anything around 2000 cm-1 and below does not involve what type of bond?
Anything around 2000 cm-1 and below does not involve hydrogen, be it C=O, C=C, C-C, or C-O.
Rate from least sharp to most sharp in IR: O-H, N-H, or alkyne C-H
OH is the broadest. N-H is slightly sharper. Alkyne C-H is very sharp.
H-indicator <–> H+ + Indicator-
Describe what happens at high pH, low pH, and neutral pH
- At low pH, high [H+], H-indicator and its color will predominate.
- At high pH, low [H+], indicator- and its color will predominate.
- At neutral pH, both H-indicator and indicator- will co-exist in an equilibrium, so the color will be a mixture of the two.
Colors of the universal indicator and acidity
- Red: very acidic
- Orange: acidic
- Yellow: weakly acidic
- Green: neutral
- Blue: basic
- Purple: very basic
*
Why do double bonds absorb UV light?
Double bonds absorb UV because the pi electrons transition from the bonding and non-bonding molecular orbitals to the anti-bonding orbitals
What do conjugated systems do to to energy and wavelength?
- Conjugated systems decreases the energy of electromagnetic radiation that is absorbed.
- The more conjugated double bonds there are, the longer the wavelengths of absorbed radiation.
- If there are enough conjugated double bonds, the molecule will start to absorb in the visible region.
What happens during mass spectrometry?
Mass spec is when you bombard a molecule with electrons.
What if electrons miss the molecule in MS?
Your molecule is neither fragmented nor ionized. Uncharged molecules are not detected and are not included in the mass spectra.
What if the electrons do not break apart your molecule, but merely ionizes it? (MS)
this “molecular ion” will be detected as the parent peak, also called the molecular ion peak.
What if the electrons not only ionize but also fragment your molecule? (MS)
all the fragmented ions will be detected and plotted in the mass spectra.
The more fragmentation, the (smaller/larger) the molecular ion peak?
The more fragmentation, the smaller the molecular ion peak.
What do peaks clustered close together in a mass spectrometer indicate?
Peaks clustered really close to one another depicts isotopes.
What does the base peak show?
The base peak is the tallest peak (most abundant species).
What is mass spec. useful for?
- Measuring the molecular weight of a molecule.
- Identify the molecule by fragmentation patterns.
- Identity heteroatoms by their characteristic isotope ratios.
What is the HNMR ppm value for a carboxylic acid?
10-12 ppm
What is the HNMR ppm for an aldehyde?
10 ppm
What is the HNMR ppm for a phenyl group or an amide?
7ish ppm.
What is the HNMR ppm for an alkene?
5
What is the HNMR ppm for an alkyl halide?
4
What is the HNMR ppm for an alkyne, alcohol, or amine?
3
What is the HNMR ppm for an alkane?
0-2
When things are deshielded, what happens to the magnetic field, the chemical shift, and the field?
LARGER magnetic field, LARGER chemical shifts, and DOWNFIELD (to the left)
What determines the number of peaks in a HNMR spectra?
It’s the number of neighboring hydrogens plus 1.