Module 6 Flashcards

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1
Q

Explain how mutagens from electromagnetic radiation sources work.

A

Ionising radiation such as x-rays, γ rays, α particles and β particles, can damage DNA Directly; Ionisation of molecules in the DNA, resulting in the sugar-phosphate backbone breaking, or a nitrogenous base changing so that it no longer pairs with its complementary base; Or Indirectly; Ionising other molecules in the cell, sometimes producing free radicals which can interact with other molecules to form compounds (such as H2O2) which can damage DNA.

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2
Q

Explain how naturally occurring mutagens work.

A

Naturally occurring mutagens are spontaneous and cause DNA replication errors which are retained because the normal mechanism of DNA repair does not correct them. Examples of naturally occurring mutagens of biological origin include various toxins produced by living organisms, such as alkaloids produced by plants such a bracken ferns, and mycotoxins produced by fungi.

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3
Q

Explain how chemical mutagens work.

A

Chemical mutagens are chemicals that cause mutations if cells are exposed to them for a long period of time. They cause DNA change by altering the function of proteins and therefore impairing cellular processes. Examples include; Heavy metals - which can cause the sugar-phosphate backbone of DNA to break or inhibit enzymes which repair DNA and Deaminating agents like nitrous acid (converts C to U).

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4
Q

What causes a point mutation? What is the effect of a point mutation? Name the types of point mutations.

A

A point mutation is a change in a single nucleotide base pair in DNA or RNA and is an example of a small-scale gene mutation. They are spontaneous. They can be harmful, neutral or beneficial depending on the type of point mutation; Nonsense, missense or silent. Silent mutations will have no effect. A nonsense mutation can cause a genetic disease such as cystic fibrosis.

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5
Q

What causes a chromosomal mutation? What is the effect of a chromosomal mutation? Name the types of chromosomal mutations.

A

A chromosomal mutation is a large-scale alteration, being a structural and/or numerical change in the entire DNA strand. Some chromosomal mutations involve a change in chromosome number. Types of chromosomal mutations include; deletion, duplication, inversion and translocation.

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6
Q

Compare somatic and germline mutations in relation to their effect on an organism.

A

Similarities
- Both occur during cell replication

Somatic mutation

  • Occurs in non-reproductive/body cells
  • cannot be transferred to future gens
  • Occur during mitosis when DNA replication occurs
  • Affects all cells from original mutated cell
  • Can show harmful effects; damage caused to cells, cancerous growth, cell death.
  • May result in physiological changes
  • Mostly neutral, contribute to genetic diversity
  • Do not directly change allele frequency in gene pool

Germline mutations

  • Occurs in gametes during meiosis
  • Passed on to offspring
  • Resulting embryo will have mutation in every cell
  • Can change allele frequency in a gene pool, e.g DDT resistance in mosquitoes
  • Examples of inherited diseases include; cf, huntingtons, thalasssemia
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7
Q

What is a mutation?

A

A mutation is any change to the DNA of an organism, that is unpredictable and random. That is, it cannot be predicted which gene will be affected, and how it will be affected. Most mutations have no effect on the organism. Some result in a phenotypic change to the individual.

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8
Q

Why are ‘coding’ DNA segments significant in the process of mutation?

A

Exons or ‘coding’ DNA affect phenotype due to their direct effect on proteins.

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9
Q

What would you expect to happen to the translated DNA sequence if an intron was modified by a mutagen?

A

A mutation in an intron or non-coding DNA segment usually will have no phenotypic effect whatsoever on an organism, as introns are spliced out during RNA processing.

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10
Q

What would you expect to happen to the translated DNA sequence if an exon was modified by a mutagen?

A

A missense, non-sense or silent mutation would occur. Depending on which mutation resulted the effect would be different. A missense mutation is a mutation in which the wrong amino acid is encoded, therefore a change to the DNA results in a protein that is also changed. A nonsense mutation is a point mutation that creates a stop codon, therefore, the DNA sequence would be cut short. A silent mutation produces no change to the polypeptide encoded, because the genetic code is degenerate (or “redundant”).

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11
Q

How does fertilisation contribute to genetic variation?

A

Fertilisation increases genetic variation in the population as it creates a new gene combination through the mixing of maternal and paternal genetic material, therefore adding new gene combinations to the population.

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12
Q

How does meiosis contribute to genetic variation?

A

Meiosis contributes to genetic variation through the processes of independent assortment, crossing over of alleles and random segregation of chromatids, which allows different combinations of genetic material to be produced in gametes. These genetically unique gametes then combine with other genetically unique gametes to produce an embryo with its own unique set of genes during fertilisation, thus contributing to increasing genetic diversity in the population.

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13
Q

How do mutations contribute to genetic variation?

A

Mutations are a permanent change in the DNA, and they can be random. Mutations in somatic cells do not introduce genetic variation into a population. Mutations during meiosis lead to genetic diversity in a population as these mutations are inheritable, and cause changes in the phenotypes of offspring. Point mutations during DNA replication during meiosis contribute to genetic variation as they form new alleles. Mutations can also have no effect on variation at all.

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14
Q

Evaluate the effect of a mutation on the gene pool of a population.

A
  • A mutation can have no effect, however, it can also introduce new alleles due to changes in DNA.
  • Most are harmful, confer poor fitness and will be lost from a gene pool over a few generations.
  • Some are neutral and have no advantage, they provide variation that have no effect but may provide an advantage in the future in the environment changes suddenly.
  • Some improve fitness and will increase in frequency with each generation, at the expense of other alleles.
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15
Q

Evaluate the effect of gene flow on the gene pool of a population.

A
  • Gene flow occurs when genes are exchanged with other gene pools
  • It adds/takes away alleles from a population, thus changing allele frequencies.
  • Two-way movements may cancel each other out, resulting in no effect.
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16
Q

Evaluate the effect of genetic drift on the gene pool of a population.

A
  • Genetic drift occurs when chance events, e.g a natural disaster, cause allele frequencies of small populations to ‘drift’ from one generation to the next.
  • It tends to decrease the genetic diversity in a gene pool
    -There are two ways in which genetic drift can affect the gene pool of a population: (1) the founder effect
    and (2) a genetic bottleneck.
    1) The founder effect happens when a new population is formed from a small number of individuals from an existing parent population, but the genetic make-up of these ‘founding’ individuals is not representative of the existing population.
    2) A genetic bottleneck occurs when a population on the brink of extinction grows in numbers again, but the frequency of alleles is changed because the few individuals that survived give rise to the new population which is not representative of the genetic make-up of the original population.
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17
Q

Gene pool

A

The sum of a population’s genetic information at a particular time.

18
Q

Allele frequency

A

The relative frequency (fraction) of an allele at a particular gene locus in a population.

19
Q

Natural selection

A

A process by which some individuals have a phenotype that confers on it an increased chance of contributing to the gene pool.

20
Q

Biotechnology

A

The use of biological materials as tools, to fulfill human needs. For e.g, the use of biological materials; enzymes, antibiotics, stem cells, tissues and whole organisms.

21
Q

Provide an example of the use of biotechnology involving plants, and analyse its social implications and ethical uses.

A
  • Genetically modified crops
  • These provide more nutrients, use less farm-land, less water, pesticides, fertiliser and soil
  • Cross-pollination between GM and non-Gm may occur resulting in less genetic variation
    Social - GM can contaminate non-GM, prohibiting neighbouring farmer from labelling products as certified organic, limiting ability to earn income
    Ethical - Some foods are not labelled as GM therefore consumers cannot make an informed choice about buying and consuming products.
22
Q

Provide an example of the use of biotechnology involving animals, and analyse its social implications and ethical uses.

A

Genetically modified Salmon
- GM salmon is genetically engineered to grow to market size in half the usual time. It has a growth hormone gene from Chinook salmon plus gene regulators from an eel species - so it continually produces low levels of growth hormone.
Social implications - Lower food costs, alleviate hunger and improve health. Also, may promote allergic reactions, increased levels of growth hormone associated with different cancers,
Ethical issues - If released into the wild, these salmon will mate with wild type salmon having devastating effects on the food web.

23
Q

Provide some examples of future directions of the use of biotechnology.

A
  • Biotechnology research has the potential to make revolutionary advances in the fields of medicine, agriculture and the environment, with applications such as new vaccines and pest-resistant crops.
  • Pharmacogenomics, nanotechnology and gene therapy are providing potential for improved disease protection and treatment.
  • GM crop technology aims to increase the nutritional value of foods and improve crop productivity.
  • Green biotechnology offers potential solutions to decrease greenhouse gases and therefore mitigate climate change.

Revise table

24
Q

Evaluate 3 potential benefits for society of research using genetic technologies.

A

Benefit: GM crop technology can be used to increase food production and quality to alleviate food shortages and dietary deficiencies.
Evaluation: May increase human population, the increased food supplies need to be equitably distributed, may have an impact on the current obesity epidemic in developed nations.
Benefit: Crop biotechnology reduces agriculture’s greenhouse gas emissions by helping farmers adopt more sustainable practices such as reduced tillage, which decreases the burning of fossil fuels and retains more carbon in the soil.
Evaluation: consumers may be hesitant about purchasing GM crops for religious/ethical reasons, this benefit may not be enough to encourage the switch to GM.
Benefit: Gene editing using CRISPR-Cas9 in species de-extinction. Adding genes from an extinct species to the genome of the most closely related living organism could in theory recreate these lost species.
Evaluation: There are risks for the species which the genes will be inserted into, bringing back a species may be disruptive and harmful.

25
Q

Biodiversity

A

Biodiversity essentially refers to the total variety and variability between & within all classes of species as well as the ecosystems in which they reside.

26
Q

What are the three categories of biodiversity?

A

Genetic Diversity – refers to the total variety of genes (allele frequency) within a species.
Species Diversity – refers to the total variety or types of species living on Earth.
Ecosystem Diversity – refers to the total variety of ecosystems (habitats) and the biotic components interacting within an ecosystem (e.g. components such as water, air soil) on Earth.

27
Q

Evaluate the changes to the Earths biodiversity due to genetic techniques.

A

Transgenic species
- Creation of transgenic species by introducing new gene combinations in a population increases genetic and species biodiversity in the short term, but not through natural evolution.
- When these GM species are selectively bred and even cloned for agricultural purposes, they have the potential to decrease biodiversity in the long term and therefore increase the risk of populations being wiped out in response to disease and sudden changes in the environment.
- May cause an increase in the rate of extinction of some wild type species that cannot compete with genetically engineered organisms in the natural environment or if GM organisms are farmed instead of the wild type species.
Cross-pollination
- between GM and non-GM crops is another potential threat to biodiversity, it decreases genetic diversity.

28
Q

Provide 3 examples of genetic technologies that induce genetic change and describe their uses and advantages. (bacteria, plants and animals)

A

• Use of transformed bacteria
- to produce drugs, hormones and enzymes.
- to make organic compounds, e.g. Aspartame (NutraSweet®)
• Use of transgenic plants
- to make proteins, e.g. transgenic corn is used to make antibodies.
- Genetic modification of plants to increase yield, improve colour or prevent fruit ripening.
• Genetic modification of animals
- to increase disease resistance, growth rate, wool quality or lean muscle mass, e.g. transgenic salmon grow twice as fast as wild type salmon.

29
Q

Compare artificial insemination and artificial pollination.

A

Similarities: Both give breeders greater control over phenotypes of offspring.

Artificial insemination
Process - Semen collected from male with desirable traits > divided into straws > chilled and frozen in liquid N2 for long term storage and transport > thawed and inserted into females vagina, sperm deposited.
Outcomes - Can alter genetic composition of a populatio because more offspring can be bred from a prized animal than in traditional mating.
- Sperm can be transported overseas for breeding = new genes in a different part of the world
- Can ˅ genetic diversity because 1 animal may be used to ‘sire’ hundreds of offspring therefore having a ^ % of its genes in the population
- Undesirable genes can also be spread
- Unkept pedigree records = inbreeding = ^ chance of recessive characteristics being expressed which may be undesirable or lethal
- Genes that would have been eliminated in natural populationc can remain part of the population
- Sperm banks = breeders can select desirable characteristics = ^ proportion of genes in a population.

Artificial pollination
Process - Pollen from stamens of 1 plant is dusted by hand onto stigmas of the same/different flower.
Outcomes - Gives breeder ^ degree of control over the breeding process.
- Enables production of offspring with specific favourable traits, e.g disease resistant fruit, higher yield
- Can create new hybrid species = ^ genetic variation
- Plants grown in crop ‘monocultures’ (identical plants) are less genetically diverse = vulnurable to new pathogens.

30
Q

Assess the effectiveness of whole organism cloning.

A

Cloning plants - A few cells from an organism (cuttings and graftings) are grown in a culture medium to produce mature organisms that are genetically identical, no seeds are needed.
Negative impacts - no genetic diversity = susceptibility to disease.
Cloning of animals - DNA needs to be extracted from an adult animal, for e.g through a somatic cell nuclear transfer, e.g Dolly the sheep.
Negative impacts - Cloned animals are expensive to buy due to technology involved.
- Health problems and mortality rates are ^ than normal populations
- Reduces genetic diversity (clones are identical) = natural gene combinations will disappear = pop is less likely to survive sudden env changes.

Ethical issues

  • Concern for animal welfare
  • Techniques could be used for humans
  • Religious argument - humans acting as God
  • Unforeseen health risks for cloned animals
31
Q

Assess the effectiveness of gene cloning.

A
  • Gene is cut from the source organism using restriction enzymes > gene pasted into a vector DNA or plasmid by a process known as ligation (ligase enzymes used to join fragments of DNA) > plasmid is introduced to a host cell by transformation process > host cell can now make copies of the vector DNA when it replicates its own DNA.
    Ethical issues - Concern for animal welfare (source organism and organism receiving gene)
  • Expensive process
32
Q

Describe an agricultural application of recombinant DNA technology.

A

Creation of transgenic species:
Agricultural example - Bt cotton
- Gene from Bacillus thuringiensis inserted into DNA of a cotton plant > produces protein that kills caterpillars (protection against pests) > harmless to humans and other animals.
- This ^ crop yield = ^ profits
- ˅ use of pesticides = better for env and ˅ development of pesticide resistance in caterpillars
- ˅ biodiversity and genetic variation
- Contamination of other species

33
Q

Describe a medical application of recombinant DNA technology.

A

Creation of transgenic species:
Medical example - Transgenic Sheep
- Take human gene for clotting factor VIII > place into DNA of sheep egg cell (by enzymes) and fertilise it > implant egg > lamb born to produce human factor VIII in milk. Used to treat patients with haemophilia or people with clotting disorders, therefore, beneficial to human health.
- ˅ pressure on blood donors
- Human gene can be passed onto offspring
- Animal welfare is a concern
- Ethics of ‘tampering’ with nature.

34
Q

Evaluate the benefits of using genetic technologies in agriculture. Provide examples.

A

For producers, the use of transgenic organisms provides an opportunity to increase the productivity of marginalised land and reduce harvest losses.
For e.g
Bt cotton - Bt cotton produces proteins that are toxic to the specific Helicoverpa spp. pest when it eats the plant, thus providing resistance to the pest. Benefits of this include; more yield of cotton, as it is unaffected by the pest, reduced use of pesticides, making it an effective use of the genetic technology.
Golden rice - genetically modified in order to produce beta carotene, which is not normally produced in rice, created using two beta-carotene biosynthesis genes: psy (phytoene synthase) from daffodil (Narcissus pseudonarcissus) crtI (phytoene desaturase) from the soil bacterium Erwinia uredovora. Beta carotene is converted into Vitamin A when metabolized by the human body. Vitamin A is beneficial to humans for healthier skin, immune systems, and vision.

35
Q

Evaluate the benefits of using genetic technologies in medicine. Provide examples.

A

An example of a genetic technology used in medicine, in pharmacology specifically, is the production of human insulin, through recombinant DNA technology.

  • Process occurs by the insulin producing gene (humulin) being cut out of the DNA of a human cell > recombinant plasmid is formed by this gene being inserted into a bacterial plasmid > inserted into the bacteria, which reproduces producing copies of this gene.
  • The use of this technology is effective and useful as it can be produced more quickly and efficiently, and is better tolerated by diabetics than insulin from cows and pigs which was previously used as treatment. Another example; use of monoclonal antibodies (MABs) in cancer research.
  • MABs use genetic technology to artificially clone antibody-producing cells that target specific antigens.
  • This technology is effective and valuable as the MABs can be used to target cancer cells, and can be produced to treat specific forms of cancer, thus increasing their effectiveness.
36
Q

Evaluate the benefits of using genetic technologies in industry. Provide examples.

A

Research is occurring into the use of genetically modified plants and bacteria for use in industry.
For e.g:
CSIRO has been working on potato plants that produce a type of starch that can be used to produce a range of products such as paper and textiles.
- useful as it is a more sustainable source for the production of these.

Researchers have also been working on developing genetically engineered plants and bacteria (E. coli) that can absorb heavy metals, such as mercury from contaminated sites.
- Beneficial in reducing environmental effects of these contaminations, by aiding in the remediation of mine sites and other heavily polluted areas, reducing harm to local ecosystems.

37
Q

How does the use of biotechnology in agriculture impact biodiversity?

A
  • Biotechnology may ^ or ˅ genetic diversity
    For e.g selective breeding
  • In short term, introduced genes broaden gene pool in a population
  • In the long term, derived traits become more common in the gene pool.
  • ˅ genetic variation when pure-bred species and animals that are highly pedigreed have been selectively bred for certain desirable traits.
38
Q

How can social context influence the use and development of biotechnologies?

A

Social context is the physical and social setting we live in. The biotechnologies that are available to a society are dictated by:

  • the specific needs of that society (For e.g in some countries, DNA fingerprinting techniques are used extensively in forensic science and paternity testing)
  • the choices made by the government (DNA analysis techniques such as STR are time consuming and costly and may not be available in all parts of the world.)
  • the wealth of individuals
  • the economic status of the country
  • There is also potential for discrimination, ownership and privacy issues, and there is the possibility of the biotechnologies being used inappropriately.
39
Q

How can economic context influence the use and development of biotechnologies?

A

Economic context can be shaped actively by the city and influences businesses to make investments or create jobs. It therefore influences a city’s economic structure and its attractiveness as a location. In relation to the impacts of biotechnology on the economics of a country:

  • It needs to be able to make farmers a profit as well as being affordable for consumers
  • Patenting can have an impact as it means a company owns the biotechnology and thus controls factors such as affordability
  • It can affect the economy by giving large corporations monopoly
  • Biotechnologies may not be affordable to all nations (e.g small scale farmers in developing countries may not be able to afford GM seeds for crops, thus the country does not have accessibility to these crops - inequality due to economic status)
  • Biotechnologies such as GM foods can be beneficial to the economy as they can be produced in greater volumes for equal or lower costs. (for e.g this occurs with GM Atlantic salmon, meaning the consumer can buy for less and the atlantic salmon farmers can make more profit.)
40
Q

How can cultural context influence the use and development of biotechnologies?

A

Cultural context is dependent on the shared meanings, ideas, beliefs and characteristics of the people who make up a society. These factors will influence the openness of certain communities towards the use of biotechnologies.

  • Some countries may be further developed or more behind in relation to technology, because of the influence of culture and the lack of openness or interest towards the use of biotechnologies.
  • There are questions about the introduction of biotechnologies and what impact it may have on certain cultures in certain countries, for e.g. Who mobilizes in reaction to these new technologies? How do they become informed about the technology and develop their position in relation to it? To what extent do they join forces in new or existing organizations, and how do they attempt to influence the policy-making process?
  • There may be backlash from some communities if biotechnologies begin to be used/promoted without regard for their opinions/beliefs.
41
Q

Outline one process used to produce a transgenic species.

A

Genetically modified (GM) soy is made using recombinant DNA techniques. Genes from the bacterium Agrobacterium tumefaciens are extracted and inserted into a bacterial plasmid. A gene gun is used to insert this plasmid into the nuclei of soy plant cells.