Module 2 Flashcards
Cell structure, Biological molecules, Nucleotides, Enzymes, Plasma membrane, Cell division
What is a microscope?
Instrument that allows an object to be magnified
When was the first light microscope developed
16th to 17th century
When was the first cell observed, by who
1665, Robert Hooke
When was the first living cell observed
1674
When was the first nucleus observed, by who
1833, Robert Brown
When was the universal cell theory made, what is it
1873, “all living things are composed of cells and cell products
How does a light microscope work?
Two lenses, objective and eyepiece. Light passes through the specimen
What is magnification
How much bigger the image is then the actual object
What is resoloution
The ability to distinguish between two objects
What is magnification and resolution of a light microscope
Magnification up to 2000
Resolution of 200nm
What is the equation for magnification
AIM M = Image size/Actual size
What is the difference between dry and wet mounts, examples
Dry mount - thin small samples are placed on the slide with a coverslip on top. Eg hair/pollen
Wet mount - Specimens are suspended in liquid, coverslip is placed at an angle. Eg aquatic samples
What is a squash slide, example
Wet mount, a soft sample is squashed between two slides, creating a thin layer of cells. Eg Root tips
What is a smear slide, example
A wet mount, the edge of a different slide is used to smear a sample, creating a thin, even layer of cells. Eg blood
Why is it important to stain light microscope samples
increase contrast between organelles, by being absorbed more or less by different components
How to stain a slide
Sample is allowed to air dry, then passed through a flame, the specimen is now adhered to the slide, and will take up the stain
What are crystal violet and methylene blue attracted to?
Negatively charged materials in cytoplasm
What are Congo red and Nigrosin attracted to
Repelled by negatively charged cytosol, so dye stains outside of cells
What does differential staining do
Distinguishes between two types of organisms that would otherwise be harder to identify
What is the risks of staining
Many stains are an irritant
How should scientific drawing be drawn?
Title, magnification, sharp pencil, white unlined paper, big drawing, smooth continuous lines, no shading, clearly defined structures, proportions are correct, label lines do not cross and do not have arrow heads and are parallel tot the top of a page, with a ruler
What is an eyepiece graticule
Glass disk with a scale of 1 to 100, which has no units. The relative size of the divisions increase in magnification, but it remains unchanged
What is a stage micrometer
Microscope slide with a scale in micrometers
Explain how to calibrate a light microscope
Put the stage micrometer in place and the eyepiece graticule in the eyepiece, align them
See where the scales line up on both scales, calculate the graticule division (number of micrometres/number of graticule divisions)
How does an transmission electron microscope work
A beam of electrons passed through the specimen
What is the magnification/resolution of a TEM
x500,000, 3-10nm
How does a scanning electron microscope work
A beam of electrons is sent across surface of a specimen
What is the magnification/resolution of a SEM
x500,000, 3-10nm
Compare light microscopes and electron microscopes
Light
Small/portable
Simple sample prep
Up to x2000, 200nm
Specimens are living or dead
Electron
Expensive
Large
Complex sample prep, distorts material
Vacuum needed
Black and white images
x500,000,
Specimens are dead
How does a laser scanning confocal microscope work
moves a spot of focused light over a specimen, fluorescence from dyed areas, which are filtered through a pinhole aperture, Only light from close is sharp, from far away it is blurry, but these both have the same focal plane, so it is not blurry
What is the advantage of laser scanning
Non invasive, used in development of new drugs
What is a fluorescent tag? What is an advantage?
glowing under UV light. Allows for more precision
What is a cell?
Basic unit of all life
What is the difference between prokaryotic and eukaryotic
Prokaryotic - single celled organisms with no membrane bound organelle
Eukaryotic - multicellular organisms with membrane bound organelle
Cell structure:
Describe the structure of the nucleus.
● Surrounded by a nuclear envelope
● Nuclear pores allow substances to enter/exit.
● Dense nucleolus
Cell structure:
Describe the function of the nucleus.
● Contains DNA in the form of chromosomes.
● Controls cellular processes
Cell structure:
Describe the function of the nucleolus.
producing ribosomes, composed of proteins and RNA, which is used to made rRNA and combined with proteins to make ribosomes
Cell structure:
Describe the structure and function of the endoplasmic reticulum (ER).
● Cisternae: network of tubules & flattened sacs extends from cell membrane & connects to nuclear envelope:
● Rough ER: many ribosomes attached for protein synthesis & transport.
● Smooth ER: lipid synthesis.
Cell structure:
Describe the structure and function of the Golgi apparatus.
● Modifies & packages proteins for export.
● Synthesises glycoproteins.
Cell structure:
Describe the structure and function of ribosomes.
Formed of protein & rRNA.
Have large subunit which joins amino acids & small subunit with mRNA binding site.
Protein synthesis
Cell structure:
Describe the relationship between the organelles involved in the production and synthesis of proteins
The ribosomes that synthesise proteins are attached to the rER. Vesicles transport proteins to the cis side of the Golgi apparatus, which modifies proteins for secretion via (secretory) vesicles
Cell structure:
Describe the structure of a mitochondrion.
● Surrounded by double membrane.
● Folded inner membrane forms cristae
● Fluid matrix: contains mitochondrial DNA, respiratory enzymes, lipids, proteins.
Cell structure:
Describe the structure of a chloroplast.
● Double membrane.
● Thylakoids: flattened discs stack to form
grana, containing chlorophyll
● lamellae: tubes attach thylakoids in adjacent grana.
● Stroma: fluid-filled matrix.
Cell structure:
State the function of mitochondria and chloroplasts.
● Mitochondria: site of aerobic respiration to produce ATP.
● Chloroplasts: site of photosynthesis
to convert solar energy to chemical energy.
Cell structure:
Describe the structure and function of a lysosome.
Hydrolytic enzyme removes waste products
Cell structure:
Describe the structure and function of a plant cell wall.
● Made of cellulose (support plant)
● Plasmodesmata form pathway to allow molecules to pass between cells.
● Middle lamella separates adjacent cell walls.
Cell structure:
What are bacterial and fungal cell walls made of?
bacteria: peptidoglycan (murein)
fungi: chitin
Cell structure:
Describe the structure and function of centrioles.
● Spherical group of 9 microtubules arranged in a 9+2 arrangment
● Located in centrosomes.
● Migrate to opposite poles of cell during prophase & spindle fibres form between them.
Cell structure:
Describe the structure and function of flagella.
● made of the protein flagellin.
● Rotates to move (unicellular)
organism.
Cell structure:
Describe the structure and function of cilia.
● protrusions on eukaryotic cells.
● Move back and forth rhythmically to sweep foreign substances / movement.
Cell structure:
Why is the cytoskeleton important?
● Provides mechanical strength.
● Aids transport within cells.
● Enables cell movement.
Cell structure:
Compare eukaryotic and prokaryotic cells.
Both have:
● cell membrane
● cytoplasm
● ribosomes
Cell structure:
Contrast eukaryotic and prokaryotic cells.
Prokaryotic:
0.5-5µm
DNA is circular with no proteins, in the cytoplasm
Cell division occurs by binary fission - no spindle involved
70s ribosomes
No membrane bound organelles
Cell wall is made from peptidoglycan and murein
Eukaryotic
100µm
DNA is associated with proteins, and formed into proteins (linear)
Cell division occurs by mitosis or meiosis involves spindle fibres (Separate chromosomes)
80s ribosomes
Membrane bound organelles, and not membrane bound organelles
Cell wall is present in plants (cellulose), fungi (chitin)
Cell structure:
Describe the structure and function of the cell-surface plasma membrane.
‘Fluid mosaic’ phospholipid bilayer with extrinsic & intrinsic proteins embedded.
● Acts as a barrier
● Semi permeable
● Involved in cell signalling / cell recognition.
Cell structure:
Explain the role of cholesterol, glycoproteins & glycolipids in the cell- surface membrane.
● Cholesterol: steroid molecule connects phospholipids & reduces fluidity.
● Glycoproteins: cell signalling, cell recognition (antigens) & binding cells together.
● Glycolipids: cell signalling & cell recognition.
Biological Molecules:
How do hydrogen bonds form between water molecules?
Water is polar Forms O 𝛿- (slightly negative) & H 𝛿+ (slightly positive).
There are intermolecular forces of attraction between a on O 𝛿- of one molecule & H 𝛿+ on an adjacent molecule.
Biological Molecules:
State 7 biologically important properties of water.
● reaches maximum density at 4℃
● high surface tension
● incompressible
● solvent for chemical reactions
● high specific heat capacity
● high latent heat of vaporisation
● cohesion between molecules
Biological Molecules:
Why is the incompressible nature of water important for organisms?
Provides turgidity to plant cells.
Provides hydrostatic skeleton for some small animals
Biological Molecules:
Explain why ice floats on water. Why is this important for organisms?
Ice is less dense than water because H-bonds hold molecules in fixed positions further away from each other.
Insulates water in arctic climates so aquatic organisms can survive
Biological Molecules:
Why is the high surface tension of water important for organisms?
Slows water loss due to transpiration in plants.
Water rises in narrow tubes, lowering demand on root pressure.
Some insects can ‘skim’ across the surface of water.
Biological Molecules:
Why is water an important solvent for organisms?
Polar universal solvent dissolves
Biological Molecules:
Why are the high specific heat capacity and latent of vapourisation of water important for organisms?
Cooling effect when water evaporates from skin surface as sweat/ from mouth when panting.
Biological Molecules:
Define monomer and polymer. Give some examples.
monomer: smaller units that join together to form larger molecule
● monosaccharides (glucose, fructose, galactose, ribose)
● amino acids
● nucleotides
polymer: molecules formed when many monomers join together
● polysaccharides
● proteins
● DNA/ RNA
Biological Molecules:
What happens in condensation and hydrolysis reactions?
Condensation: chemical bond forms between 2 molecules & a molecule of water is produced.
Hydrolysis: a water molecule is used to break a chemical bond between 2 molecules
Biological Molecules:
Name the elements found in carbohydrates, lipids, proteins and nucleic acids.
carbohydrates & lipids: C, H, O
proteins: C, H, O, N, S
nucleic acids: C, H, O, N, P
Biological Molecules:
Draw the structure of ⍺-glucose and 𝛽-glucose.
:)
Biological Molecules:
Describe the properties of 𝛼 glucose.
● Small & water soluble
Biological Molecules:
Draw the structure of ribose.
:)
Biological Molecules:
What type of bond forms when monosaccharides react?
(1,4 or 1,6) glycosidic bond
● 2 monomers = 1 chemical bond = disaccharide.
● Multiple monomers = many chemical bonds = polysaccharide.
Biological Molecules:
Describe how disaccharides form.
Name 3 disaccharides.
Molecular formula
Condensation reaction forms glycosidic bond between 2 monosaccharides.
● maltose: glucose + glucose
● sucrose: glucose + fructose
● lactose: glucose + galactose
all have molecular formula C12H22O11
Biological Molecules:
Describe the structure and functions of starch.
Storage polymer of 𝛼-glucose in plant cells:
● insoluble
● large
made from amylose:
● 1,4 glycosidic bonds
● helix
and amylopectin:
● 1,4 & 1,6 glycosidic bonds
● branched = many ends for hydrolysis into glucose
Biological Molecules:
Describe the structure and functions of glycogen.
Store of 𝛼-glucose
● 1,4 & 1,6 glycosidic bonds.
● Branched = many ends for hydrolysis.
● Insoluble
● Compact.
Biological Molecules:
Describe the structure and functions of cellulose.
Polymer of 𝛽-glucose gives rigidity to plant cell walls
● 1,4 glycosidic bonds.
● Straight-chain, unbranched molecule.
● Alternate glucose molecules are rotated 180°.
● H-bond crosslinks between parallel strands
Biological Molecules:
How do triglyglcerides form?
Condensation reaction between 1 molecule of glycerol &
3 fatty acids
forms ester bonds.
Biological Molecules:
Contrast saturated and unsaturated fatty acids.
Saturated:
● contain only single bonds
● straight-chain molecules
● higher melting point = solid at room temp
● found in animal fats
Unsaturated:
● contain C=C double bonds
● ‘kinked’ molecules
● lower melting point = liquid at room temp
● found in plant oils
Biological Molecules:
Relate the structure of triglycerides to their functions.
● High energy:mass ratio = energy storage
● Insoluble hydrocarbon chain = waterproof plants
● Slow conductor of heat = thermal insulation
● Less dense (floats) water = buoyancy of aquatic animals.
Biological Molecules:
Describe the structure and function of phospholipids.
glycerol attached to 2 hydrophobic fatty acid tails & 1 hydrophilic polar
phosphate head.
● Forms phospholipid bilayer in water = component of membranes.
● Tails can splay outwards = waterproofing
Biological Molecules:
Are phospholipids and triglycerides polymers?
No. They are macromolecules.
Biological Molecules:
Describe the structure and function of cholesterol.
Steroid structure of 4 hydrocarbon rings. Hydrocarbon tail on one side, hydroxyl group (-OH) on the other side.
Adds stability to cell surface phospholipid bilayer by connecting molecules & reducing fluidity.
Biological Molecules:
What is the general structure of an amino acid? Draw it
-COOH carboxyl group
-R variable side group
-NH2 amine group
Biological Molecules:
How do polypeptides form?
Condensation reactions between amino acids form peptide bonds
(-CONH-)
Biological Molecules:
Define ‘primary structure’ of a protein.
Primary: straight chain of amino acids, determined by sequence of codons on mRNA.
Biological Molecules:
Describe the 2 types of secondary protein structure.
α-helix:
● All N-H bonds on same side of protein chain.
● Spiral shape.
● H-bonds parallel to helical axis.
β-pleated sheet:
● N-H & C=O groups alternate from one side to the other.
● Pleated sheet
Biological Molecules:
Define ‘tertiary structure’ of a protein. Describe the bonds present.
3D structure formed by further folding
● Disulfide bonds: strong covalent S-S bonds (cysteine only)
● Ionic bonds: strong bonds between charged R groups
● Hydrogen bonds: numerous & easily broken.
Biological Molecules:
Define ‘quaternary structure’ of a protein.
● May consist of more than one polypeptide.
● Precise 3D structure held together by the same types of bond as tertiary structure.
● May involve addition of prosthetic groups
Biological Molecules:
Describe the structure and function of globular proteins.
● Spherical & compact.
● Hydrophilic R groups face outwards & hydrophobic R groups face inwards = water-soluble.
● Involved in metabolic processes (enzymes)
Biological Molecules:
Describe the structure of haemoglobin.
● Globular conjugated protein with prosthetic group.
● 2 𝛼-chains, 2 𝛽-chains, 4 prosthetic haem groups.
● Water-soluble
● Fe2+ haem group bonds with O2.
● Tertiary structure changes so it is easier for O2 to bond
Biological Molecules:
Describe the structure and function of fibrous proteins.
● Can form long chains or fibres.
● Insoluble in water.
● Useful for structure and suppor
Biological Molecules:
List the functions of collagen, elastin and keratin.
Collagen: component of bones, cartilage, tendons.
Elastin: provides elasticity to connective tissue, arteries, skin, lungs,
Keratin: structural component of hair, nails, hooves/ claws,
Biological Molecules:
Describe how to test for proteins in a sample.
Biuret test #
1. Add biurets regenat
3. Positive result: colour changes from blue to purple
Negative result: solution remains blue.
Biological Molecules:
Describe how to test for lipids in a sample.
- Dissolve solid samples in ethanol.
- Add an equal volume of water and shake.
- Positive result: milky white emulsion forms
Biological Molecules:
Describe how to test for reducing sugars.
- Add an equal volume of Benedict’s reagent to a sample.
- Heat the mixture in an electric water bath at 100℃ for 5 mins.
- Positive result: colour changes from blue to orange & brick-red precipitate forms.
Biological Molecules:
Describe the Benedict’s test for non-reducing sugars.
- Negative result: Benedict’s reagent remains blue.
- Add Hydrochloric acid
- Heat in a boiling water bath for 5 mins.
- Neutralise the mixture using sodium carbonate solution.
- Proceed with the Benedict’s test as usual - positive test means non-reducting sugar
Biological Molecules:
Describe the test for starch.
- Add iodine solution.
- Positive result: colour changes from orange to blue-black.
Negative - orange
Biological Molecules:
How can the concentration of a solution be measured quantitatively?
● Use colorimetry to measure absorbance/%transmission. use a calibration curve from solutions of known concentration.
Biological Molecules:
Outline the process of paper chromatography.
- spot solution onto pencil ‘start line’ (origin) 1 cm above bottom of paper.
- Place chromatography paper in solvent.
- Allow solvent to run until it almost touches other end of the paper.
Molecules in mixture move different distances based on relative solubility in solvent/attraction to paper.
Biological Molecules:
What are Rf values? How can they be calculated?
Ratios that allow comparison of how far molecules have moved in chromatograms.
Rf value = distance between origin / distance between origin and solvent front.
Biological Molecules:
What is ATP, what does it do
Adenosine triphosphate, nitrogenous base, pentose sugar, and 3 phosphate groups
Releases immediate energy, by breaking the bond between phosphate groups forming ADP, during a hydrolysis reaction
Biological Molecules:
What is the ATP reaction to release energy
ADP + water -> ADP + P + energy
Biological Molecules:
What is phosphorylation
ADP attaching to a phosphate group, during a condensation reaction
Biological Molecules:
What is some properties of ATP
Small - moves in and out of cells
Water soluble - happens in aqueous environments
Intermediate energy - used in cellular reactions
Releases is small quantities - not wasted as heat
Easily recharged
Biological Molecules:
What is semiconservative replication
Two new molecules of DNA are formed, each with one old strand of DNA
Biological Molecules:
Explain DNA replication
DNA helicase unzips two strands of DNA, free nucleotides in the nucleoplasm attach to their complementary base, DNA polymerase creates phosphodiester bonds between bases, Products are identical and contain one original strand
Biological Molecules:
How are Okazaki fragments formed
DNA polymerase can only bind to the 3’ side, so moves from 3’ 5’ direction. The 5’ to 3’ (lagging strand) strand DNA polymerase has to wait until another section has been unwound. (discontinuous replication)
Biological Molecules:
What happens to Okazaki Fragments
Ligase join Okazaki fragments on the lagging strands
Biological Molecules:
What is DNA mutation?
Errors (change in the sequence of bases) created randomly
Biological Molecules:
What is the Genetic code? What are 3 features about it?
DNA coding for an amino acid.
Triplet code - read in threes (codon)
Degenerate - Codons are not overlapping. amino acids can be coded for by many codons
Universal - genetic code is the same for most organisms
Biological Molecules:
What is a start codon?
Met - Codon that starts of DNA translation/transcription, signalling the start of a gene
Biological Molecules:
Put the order of Protein synthesis
Replication, Transcription, Translation
Biological Molecules:
What is the difference between coding and template strands
The strand we want to copy is called the coding strand, The template strand is the one we transcribe
Biological Molecules:
What are the 4 bases of RNA
Adenosine, Uracil, cytosine, Guanine
Biological Molecules:
Explain DNA transcription
Free RNA nucleotides pair with complementary bases on the template strand. Phosphodiester bonds form on the RNA nucleotides by the enzyme RNA polymerase. mRNA is formed, which is an exact copy of the Coding strand and complementary to the template strand, but with Uracil, instead of Thymine. MRNA detaches from the DNA, and leaves the nucleus through nuclear pores. Double Helix reforms
Nucleotides:
What is ribosomes split into, what does it contain
Small and large subunit, contains ribosomal RNA