Mixed Flashcards
Biological molecules ✔ Cells
Endopeptidases and exopeptidases are involved in the hydrolysis of proteins.
Name the other type of enzyme required for the complete hydrolysis of proteins to amino acids.
Dipeptidase
Suggest and explain why the combined actions of endopeptidases and exopeptidases are more efficient than exopeptidases on their own.
Endopeptidase hydrolyse the peptide bonds in the middle of the protein.
Exopeptidase hydrolyse the peptide bonds at the end of the protein.
More efficient because their are more ends for the exopeptidase to hydrolyse.
figure 1 shows the co-transport mechanism for the absorption of amino acids into the blood by a cell lining the ileum. The addition of a respiratory inhibitor stops the absorption of amino acids.
Use Figure 1 to explain why.
A respiratory inhibitor will lead to less ATP produced this means no active transport. Therefore the sodium ions cannot be uptaken or leave the cell. This will lead to their being no concentration gradient for the sodium ions to be uptaken with amino acid. Therefore stopping absorption of amino acid.
The pieces of leaf tissue examined were very thin.
Explain why this was important.
The leaf tissue being very thin means there are less layers of cell therefore light can pass through
Give two reasons why it was important that the student counted the number of stomata in several parts of each piece of leaf tissue.
- This means the sample is representative
2. This means the mean of the results will be more reliable for comparison
What are the three ways a pathogen can damage hosts cells?
1) rupturing them to release nutrients inside them
2) breaking down nutrients inside the cell for their own use. This starves and eventually kills the cell.
3) replicating inside the cells and bursting them when they’re released
What are the two ways pathogens cause disease?
1) production of toxins
2) cell damage
What are the three surfaces of contact- where pathogens enter our body? and how do they get in?
1) gas-exchange system = if you breathe in air that contains pathogens, most of them will be trapped in mucus lining the lung epithelium. Some pathogens are able to reach the alveoli where they can invade cells and cause damage.
2) Skin = if you damage your skin, pathogens on the surface can enter your bloodstream. blood clots prevent pathogens from entering.
3) Digestive system = if you eat or drink food that contains pathogens. Some will survive from the acidic conditions of the stomach, and invade cells of the gut wall and cause disease.
Explain the process of phagocytosis.
1) A phagocyte recognises the antigens on a pathogen
2) The cytoplasm of the phagocyte moves round the pathogen, engulfing it.
3) The pathogen is now contained in a vacuole or a vesicle in the cytoplasm of the phagocyte.
4) A lysosome fuses with the phagocytic vacuole and the lytic enzymes break down with the pathogen
5) The phagocyte presents the pathogens antigens, it sticks the antigens on its surface to activate other immune system cells.
What is the cellular and humoral response?
Cellular = The T-cells and other immune system cells that they interact with e.g phagocytes , form the cellular response
Humoral - B cells and the production of antibodies form the humoral response.
Explain what is meant by a primary response.
The primary response is slow because there aren’t many B-cells that can make the antibody needed to bind to it.
The infected person will show symptoms of the disease while the body produces enough of the right antibody to overcome the infection.
T-cells and B-cells produce memory cells. Memory T-cells remember the specific antigen and will recognise it second time round. Memory B-cells record the specific antibodies needed to bind the antigen.
The body is now immune.
Explain what is meant by the secondary response.
If the same pathogen enters the body again, the immune system will produce a quicker, stronger immune response.
Memory B-cells divide into plasma cells that produce the right antibody to the antigen. Memory T-cells divide into the correct type of T cells to kill the cell carrying the antigen.
The secondary response often gets rid of the pathogen before you begin to show any symptoms.
Explain how monoclonal antibodies target cancer
1) Cancer cells have antigens called tumour markers that are not found on body cells.
2) Monoclonal antibodies can be made that will bind to the tumour markers.
3) You can also attach anti-cancer drugs to the antibodies
4) Antibodies come into contact with the cancer cells and bind to the tumour markers
5) This means the drug will acuumulate in the body where there are cancer cells.
6) side effects of an antibody based drug are lower than other drugs because they accumulate near specific cells
how do monoclonal cells work in pregnancy tests?
1) The application area contains antibodies for hCG bound to a coloured bead
2) when urine is applied to the application area any hCG will bind to the antibody on the beads, forming an antigen-antibody complex.
3) the urine moves up the stick to the test strip, carrying any beads with it
4) the test strip contains antibodies to hCG that are stuck in place.
5) if there is hCG present the test strip turns blue because the immobilised antibody binds to any hCG. if no hCG is present, the beads will pass through the test area without binding to anything so it won’t go blue.
How do vaccines protect individuals and populations against disease?
Vaccines contain antigens that cause your body to produce memory cells against a particular pathogen, without the pathogen causing disease. This means you become immune without getting the symptoms.
Vaccines protect individuals because they reduce the occurance of the disease. Those not vaccinated are less likely to catch the diease because there are fewer people to catch it from - this is called herd immunity.
Explain the primary, secondary, tertiary and quaternary structure of a protein.
Primary structure = A sequence of amino acids in the polypeptide chain
Secondary structure = Hydrogen bonds form between the amino acids. This makes it coil or fold.
Tertiary structure = The coiled or folded chain is coiled or folded furthur. More bonds form between different parts of the polypeptide chain. For proteins made from a single polypeptide chain, It forms their final 3D structure
Quaternary structure = the way the polypeptide chains are assembled together. Several different polypeptide chains held together by bonds. For proteins made from more than one polypeptide chain this is their final 3D structure
Describe the test for proteins.
1) add sodium hydroxide solution
2) add a few drops of copper (II) sulfate solution
3) if theres protein = it will go purple
if theres no protein = it will stay blue
Describe three functions of proteins:
REMEMBER EAST:
Enzymes = break down large food molecules or help to synthesise large molecules
Antibodies = involved in the immune response, they have variable regions.
Structural proteins = physically strong. They consist of long polypeptide chains lying parallel to each other with cross links between them.
Transport proteins = transport ions and molecules across membranes
Describe the cause and symptoms of lactose intolerance
When you don’t have enough of the enzyme lactase, you can’t break down lactose in milk properly.
undigested lactose is fermented by bacteria and can cause a whole host of intestinal complaints such as stomach cramps, excessive flatulence and diarrhoea
Describe the test for reducing sugars
Add benedicts and heat
if the sample contains reducing sugars = will turn red
Describe the test for non-reducing sugars
1) boil with hydrocholric acid and neutralise with sodium hydrogencarbonate.
2) carry out the benedicts test as if you would for the reducing sugars test.
Describe the test for starch
1) Add iodine dissolved in potassium iodide solution
2) if there is starch = will turn a blue-black colour
Explain the effect of temperature on enzymes.
1) The rise in temperature makes the enzymes molecules vibrate more
2) If the temperature goes above a certain level, this vibration breaks some of the bonds that hold the enzyme in shape
3) The active site changes shape and the enzyme and subtrate no longer fit together
4) At this point, the enzyme in denatured
Explain the effect of PH on enzymes
1) All enzymes have an optimum PH value
2) Above and below the optimum PH, the H + and OH - ions can mess up the ionic and hydrogen bonds that hold the enzymes tertiary structure in place.
3) The active site changes shape, so the enzyme is denatured
Explain the effect of substrate concentration on enzymes.
1) the higher the substrate concentration, the faster the reaction.
2) More substrate molecules means a collision between substrate and enzyme is more likely
3) This only happens until the saturation point, when there are too many substrates, all active sites are full and adding more makes no difference
Explain What a competitive inhibitor is
1) Competitive inhibitors compete with the substrate to bind to the active site but no reaction takes place.
2) Instead they block the active site so that no subtrate molecule can fit in it
3) If theres a high concentration of the inhibitor, it’ll take up nearly all the active sites and hardly any of the substrate will get to the enzyme.
Explain what a non-competitive inhibitor is.
1) non-competitive inhibitor molecules bind to the enzyme away from its active site
2) This causes the active site to change shape so the substrate molecules can no longer bind to it.
3) They dont compete with the substrate molecules to bind to the active site because they are a different shape.
4) increasing the concentration wont make any difference - enzyme activity will still be inhibited.
Explain the function of the:
1) plasma membrane
2) nucleus
3) lysosome
4) ribosome
1) regulates the movement of substances in and out of the cell
2) The pores allow substances to move between the nucleus and cytoplasm, the nucleolus makes ribosomes.
3) Contains digestive enzymes. These are kept seperate from the cytoplasm by the surrounding membrane and can be used to digest invading cells or to break down worn out components of cell.
4) The site where proteins are made.
Explain the functions of:
1) endoplasmic recticlum
2) golgi apparatus
3) microvilli
4) mitochondrion
1) synthesises and processes lipids
2) Processes and packages lipids and proteins. it also makes lysosomes
3) They increase the surface area of the plasma membrane - found on cells involved in processes such as absorption
4) the site of aerobic respiration
Explain the process of cell fractionation
1) homogenisation = breaking up the cells = by vibrating the cells or grinding the cells, this breaks up the plasma membrane and releases the organelles into solution
2) filtration = getting rid of the big bits = by filtering through a gauze to seperate any large debris or tissue debris.
3) ultracentrifuguation = seperating the organelles = to seperate a particular organelle from all the others.
Explain the process of ultracentrifugation.
1) Cell fragments are poured into a tube. The tube is put in a centrifuge and is spun at low speed. The heaviest organelles get flung to the bottom of the tube by the centrifuge.
2) the supernatent (fluid above sediment) is drained off, poured into another tube and spun in the centrifuge at a higher speed. the heaviest organelles form a pellet at the bottom, the supernatant is drained and spun at a higher speed.
3) The process in repeated at higher speeds until all the organelles are seperated.
Explain what order organelles are seperated in ultracentrifugation
1) nuclei
2) mitochondria
3) lysosome
4) endoplasmic recticulum
5) ribosomes
Explain the two types of microscope - light and electron
light =
they have a lower resolution than electron microscopes
they use light
Electron microscopes =
They use electrons
they have a higher resolution so give a more detailed image
Explain the strengths and weaknesses of the transmission scanning microscope and the scanning electron microscope
TEM = good because they give high resolution images, but bad because they can only use thin specimens
SEM = good because they can be used on thick specimens but bad because they give a lower resolution
Explain what an aneurysm is
Aneurysm is a balloon-like swelling of the artery. Atheroma plaques damage and weaken arteries, they narrow arteries increasing blood pressure.
When blood travels through a weakened artery at high pressure, it may push inner layers through the outer elastic layer to form an aneurysm.
This may burst - causing a haemorrahage
Explain what thrombosis is.
Thrombosis is a formation of a blood clot.
An atheroma plaque can rupture the endothelium damaging the artery wall and leaving a rough surface
platelets and fibrin accumulate at the site of damage and form a blood clot
This blood clot can cause a complete blockage of the artery or it can become dislodged and block a blood vessel elsewhere in the body.
Debris from the rupture can cause another blood clot to form furthur down the artery.
Explain what atheroma is.
It blocks the lumen of the artery and restricts blood flow, which causes blood pressure to increase.
If damage occurs to the endothelium, white blood cells and lipids clump together to form fatty streaks.
over time, white blood cells, lipds and connective tissue builds up and hardens to form an atheroma - a fibrous plague.
Explain the process of the cardiac cycle.
1) The sino-atrial node (SAN) sends out impulses across atrial walls
2) This causes the right and left atria to contract at the same time / causes atrial systole
3) impulses can not cross to ventricles due to non conducting tissue
4) Waves of electrical activity are transferred from the SAN to the atrioventricular node (AVN)
5) new impulse travels down bundle of His
6) slight delay before the AVN reacts to make sure ventricles contract after atria empty
7) bundle of His conducts impulses to the purkyne fibres.
8) purkyne fibres carry the impulses to the muscular walls of the right and left ventricles causing ventricles to contract from bottom up.
Describe what happens in inspiration and expiration in the lungs.
1) the intercostal and diaphragm muscles contract.
2) this causes the ribcage to move upwards and downwards and the diaphragm to flatten increasing the volume of the throax
3) As the volume of the throax increases, the lung pressure decreases.
4) This causes air to flow into the lungs. Inspiration requires energy.Expiration_
1) The intercostal and diaphragm muscles relax
2) the ribcage moves downwards and inwards and the diaphragm becomes curved again
3) the thorax volume decreases, causing the air pressure to increase
4) air is forced out of the lungs. it doesnt require energy_
Explain what happens when someone gets cholera
1) The toxin causes chloride ion protein channels in the plasma membranes of the small intestine epithelial cells to open.
2) chloride ions move into the small intestine lumen. The build up of chloride ions lowers the water potential of the lumen.
3) water moves out of the blood across the epithelial cells and into the small intestine lumen by osmosis.
4) the increase in water secretion in intestine leads to diarrhoea causing the body to become dehydrated.
Describe the chemical reactions involved in the conversion of polymers to monomers and monomers to polymers.
Give two named examples of polymers and their associated monomers to illustrate your answer (5 marks)
- A condensation reaction joins monomers together and forms a (chemical) bond and releases water
- A hydrolysis reaction breaks the (chemical) bond between monomers and uses water
- A suitable example of polymers and monomers from which they are made
- A second suitable example of polymers and the monomers from which they are made
- Reference to a correct bond within a named polymer
Suitable Example =
Amino Acids –> Polypeptide/Protein/Enzyme/Antibody
Nucleotides –> Polynucleotide/DNA/RNA
Alpha Glucose –> Starch/Glycogen
Beta Glucose –> Cellulose
Describe how the structures of starch and cellulose molecules are related to their functions. (5 marks)
Starch (max 3)
- Helical/spiral shape so compact;
- Molecule is insoluble so osmotically inactive (does not affect water potential)
- Branched so glucose is easily accessible by enzymes to break down for respiration;
- Large molecule so cannot leave cell/cross cell-surface
membrane
Cellulose (max 3)
- Long, straight & unbranched chains of β glucose;
- Joined by hydrogen bonding, to form (micro/macro) fibrils
- These provide rigidity/strength;
Describe the structure of a cellulose molecule and explain how cellulose is adapted for its function in cells (6 marks)
- made from β-glucose;
- joined by condensation to form glycosidic bond;
- 1 : 4 link described;
- “flipping over” of alternate molecules;
- hydrogen bonds linking long straight chains;
- cellulose makes cell walls strong;
- can resist turgor pressure/osmotic pressure;
- bond difficult to break;
- resists action of enzymes
Describe the structure of proteins (5 marks)
- Polymer of amino acids;
- Joined by peptide bonds;
- That are formed by condensation;
- Primary structure is the order of amino acids;
- Secondary structure is folding of polypeptide chain due to hydrogen bonding;
- Tertiary structure is 3-D folding due to hydrogen bonding and ionic / disulfide
bonds; - Quaternary structure is two or more polypeptide chains
ATP is useful in many biological processes. Explain why (4 marks)
- Releases energy in small & easily manageable amounts;
- Broken down in a one step reaction which makes sure energy is available rapidly;
- Phosphorylates substances to make them more reactive
- Reformed/made again rapidly
Describe the biochemical tests you would use to confirm the presence of lipid, non-reducing sugar and amylase in a sample (5 marks)
LIPID
- Add ethanol/alcohol then add water and shake/mix
- White/Milky emulsion
NON-REDUCING SUGAR
- Do Benedict’s Test and stays blue/negative
- Boil with acid then neutralises with alkali
- Heat with Benedict’s and becomes red/orange (precipitate)
AMYLASE
- Add biuret (reagent) and becomes purple/vioelt/mauve/lilac
- Add starch, (leave for time), test for reducing sugar/absence of starch
Haemoglobins are chemically similar molecules found in many different species. Differences
in the primary structure of haemoglobin molecules can provide evidence of phylogenetic
(evolutionary) relationships between species.
Explain how. (5 marks)
- Mutations change base / nucleotide (sequence);
- (Causing) change in amino acid sequence;
- Mutations build up over time;
4.More mutations / more differences (in amino acid/ base / nucleotide sequence / primary
structure) between distantly related species;
OR
Few(er) mutations / differences (in amino acid / base / nucleotide sequence / primary structure) in
closely related species;
5.Distantly related species have earlier common ancestor;
OR
Closely related species have recent common ancestor;
Describe the roles of iron ions, sodium ions and phosphate ions in cells (5 marks)
IRON IONS
1. Haemoglobin binds/associates with oxygen
SODIUM IONS
- Co-transport of glucose/amino acids (into cells)
- (Because) sodium moved out by active transport/sodium potassium pump
- Creates a sodium ion concentration/diffusion gradient
- Affects osmosis/water potential
PHOSPHATE IONS
- Affects osmosis/water potential
- Joins nucleotides/in phosphodiester bond/in backbone of DNA/RNA/in nucleotides
- Used in/to produce ATP
- Phosphorylates other compounds (usually) making them more reactive
- Hydrophilic/water soluble part of phospholipid bilayer/membrane
Explain five properties that make water important for organisms (5 marks)
- A metabolite in condensation/hydrolysis/photosynthesis/respiration
- A solvent so (metabolic) reactions can occur
- High heat capacity so buffers changes in temperature
- Large latent heat of vaporisation so provides a cooling effect (through evaporation)
- Cohesion (between water molecules) so supports columns of water (in plants)
- Cohesion (between water molecules) so produces surface tensions supporting (small) organisms
Describe the induced fit model of enzyme action. (2 marks)
Active site of enzyme is not complementary;
Active site is flexible & can mould around the substrate;
Change in enzyme allows substrate to fit and form an E-S complex
Explain why maltase:
• only breaks down maltose
• allows this reaction to take place at normal body temperature.
(5 marks)
- Specific Tertiary structure enzyme (means)
- Active site is only complementary to maltose
- Description of induced fit;
- Enzyme is a catalyst which lowers the activation energy required for the reaction
- By forming an enzyme-substrate complex;
Describe competitive and non-competitive inhibition of an enzyme (5 marks)
- Inhibitors reduce binding of enzyme to substrate & prevent the formation of E-S complexes
(Competitive inhibition),
- Inhibitor has a similar shape to substrate;
- It binds to the active site (of enzyme);
- Inhibition can be overcome by adding more substrate;
(Non-competitive inhibition),
- Inhibitor binds to a site on enzyme other than active site;
- This changes the shape of the active site
- Inhibition cannot be overcome by adding more substrate
Describe the role of the enzymes of the digestive system in the complete breakdown of starch
(5 marks)
Amylase (mouth);
Breaks down starch to maltose
Maltase (Small Intestine);
Breaks down maltose to glucose
Hydrolysis of starch involves breaking of glycosidic bond
Describe the processes involved in the absorption of the products of starch digestion (5
marks)
Sodium removed from epithelial cell by active transport/sodium- potassium pump;
Into blood;
Maintaining low concentration of sodium in the epithelial cell compared to the
lumen;
Glucose moves in to the epithelial cell with sodium
Via carrier/channel protein
Glucose moves into blood;
By (facilitated) diffusion
Describe how proteins are digested in the human gut (4 marks)
- Hydrolysis of peptide bonds;
- Endopeptidases break polypeptides into smaller peptide chains;
- Exopeptidases remove terminal amino acids;
- Dipeptidases hydrolyse dipeptides into amino acids.
The epithelial cells that line the small intestine are adapted for the absorption of glucose.
Explain how. (6 marks)
- Microvilli provide a large surface area;
- Many mitochondria produce ATP for active transport;
- Carrier proteins present for active transport;
- Channel / carrier proteins for facilitated diffusion;
- Co-transport of sodium and glucose achieved through carrier protein for sodium (ions) and glucose;
- Membrane-bound enzymes digest disaccharides to produce glucose;
The movement of substances across cell membranes is affected by membrane structure. Describe how. (5 marks)
- Phospholipid (bilayer) allows movement/diffusion of non-polar/lipid-soluble substances
- Phospholipid (bilayer) prevents movement/diffusion of polar/lipid-insoluble substances
- Carrier proteins allow active transport
- Channel/carrier proteins allow facilitated diffusion/co-transport
- Shape/Charge of channel/carrier determines which substances move
- Number of channels/carriers determines how much movement
- Membrane surface area determines how much diffusion/movement
- Cholesterol affects fluidity/rigidity/permeability
Explain how the structure of DNA is related to its functions (6 marks)
- Sugar-phosphate (backbone) is double stranded into a helix so provides strength &
stability (protects bases); - Long / large molecule so can store lots of information;
- Helix / coiled so compact;
- Base sequence allows information to be stored (protein formation);
- Double stranded so replication can occur semi-conservatively as existing
strands can act as templates via complementary base pairing - Weak hydrogen bonds for replication and strand separation
OR
many hydrogen bonds so stable/strong;
Describe and explain how the structure of DNA results in accurate replication (4 marks)
- Two strands therefore semi-conservative replication;
- base pairing held together by hydrogen bonds
- hydrogen bonds weak so easily broken, which allows strands to separate;
- bases exposed and act as a template;
- A with T, C with G;
- DNA made has one parent strand and one new strand
Messenger RNA (mRNA) is used during translation to form polypeptides. Describe how mRNA is produced in the nucleus of a cell. (5 marks)
- DNA Helicase;
- Breaks hydrogen bonds between base pairs, exposing them;
- Only one DNA strand acts as a template;
- RNA nucleotides attracted to exposed bases;
- (Attraction) according to base pairing rule (A-U & C-G);
- RNA polymerase joins the RNA nucleotides together, to form pre-mRNA;
- Pre-mRNA is spliced to remove introns, forming mRNA
Starting with mRNA in the nucleus of a cell, describe how a molecule of protein is synthesised.
(6 marks)
- mRNA leaves the nucleus through nuclear pore;
- Enters the ribosome;
- tRNA molecules bring amino acids to the ribosome;
- A specific tRNA molecule exists for a specific amino acid;
- Anticodon of tRNA complementary to codon on mRNA;
- Peptide bonds form between adjacent amino acids;
- tRNA detaches and leaves to collect another amino acid;
- Ribosome moves along mRNA
Explain how a mutation can result in the production of a non-functional protein receptor (4 marks)
- Change in DNA base sequence;
- Change in amino acid sequence;
- This alters position of hydrogen/ionic/disulfide bonds;
- And causes a change in the tertiary structure (of receptor);
Describe the behaviour of chromosomes during mitosis and explain how this results in the production of
two genetically identical cells. (7 marks)
- chromosomes shorten & thicken;
- chromosomes made from two identical chromatids, due to replication in interphase;
- chromosomes move to equator of the cell;
- Chromosomes attach to individual spindle fibres;
- Spindle fibres contract & the centromeres divide;
- Sister chromatids move to opposite poles;
- Each pole receives all the genetic information;
- Nuclear envelope re-forms around each group of chromosomes
Describe what happens to chromosomes in meiosis (6 marks)
- Chromosomes shorten & thicken;
- Chromosomes associate into their homologous pairs;
- Crossing-over occurs between chromosomes, through the formation of a chiasma;
- Chromosomes join to spindle fibres, via there centromeres
- Whilst at the equator
- Homologous chromosomes move to opposite poles
- Pairs of chromatids separated in 2 nd division;
Meiosis results in genetic variation in the gametes which leads to variation in the offspring formed
by sexual reproduction. Describe how meiosis causes this variation and explain the advantage of
variation to the species. (5 marks)
- Crossing-over;
- Independent assortment (segregation of homologous chromosomes) in meiosis I;
- Independent assortment (segregation of chromatids) in meiosis II;
+ Any three from:
4. Causes individuals to have different adaptations making some better adapted;
- Better adapted survive;
- To reproduce;
- These pass on the gene / allele;
- Allows for changing environment / different environment
Describe and explain how selection will have affected the genetic diversity of a species (2 marks)
- Diversity reduced as fewer different alleles present creating a smaller gene pool;
- As alleles have been chosen or rejected;